Gvermi12730.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12730.t1
Unique NameGvermi12730.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length105
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1238889..1239296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog653948.CCA22146
PFAMsMyb_DNA-binding
Max annot lvl2759|Eukaryota
KEGG koko:K09422
Evalue3.64e-30
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
DescriptionRNA polymerase II transcription regulator recruiting activity
COG categoryADK
BRITEko00000,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12730Gvermi12730Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1238889..1239296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12730.t1Gvermi12730.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1238889..1239296 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12730.t1.start1Gvermi12730.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1238889..1238891 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12730.t1.CDS1Gvermi12730.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1238889..1239027 +
Gvermi12730.t1.CDS2Gvermi12730.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1239121..1239296 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12730.t1.exon1Gvermi12730.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1238889..1239027 +
Gvermi12730.t1.exon2Gvermi12730.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1239121..1239296 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12730.t1.intron1Gvermi12730.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_425 1239028..1239120 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12730.t1.stop1Gvermi12730.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1239294..1239296 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12730.t1 ID=Gvermi12730.t1|Name=Gvermi12730.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=105bp
LWTPHEDDRLRRLARLRPENWNVIAESLPGRTGKQCRERWLNHLQEGIRK
GFWTAREDEIIIQEQARRGNRWSDIARLLPGRSDNAVKNRFNATLKKQYV
RYPY*
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spliced messenger RNA

>Gvermi12730.t1 ID=Gvermi12730.t1|Name=Gvermi12730.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=315bp|location=Sequence derived from alignment at ScGOVlb_425:1238889..1239296+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGTGGACTCCACACGAAGACGATCGACTTCGCCGGCTCGCGAGACTGCG
TCCCGAAAACTGGAATGTAATCGCTGAGTCACTTCCCGGTCGCACTGGAA
AGCAATGTCGAGAGAGATGGCTCAATCACTTGCAGGAAGGGATTCGAAAG
GGATTCTGGACTGCCAGAGAAGATGAAATTATCATTCAGGAACAGGCGCG
GCGCGGAAATCGATGGAGCGACATTGCGCGCCTTCTGCCTGGACGCAGCG
ACAATGCTGTCAAGAATCGCTTCAATGCAACGCTCAAAAAGCAATATGTT
CGCTATCCATACTAA
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protein sequence of Gvermi12730.t1

>Gvermi12730.t1 ID=Gvermi12730.t1|Name=Gvermi12730.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=105bp
LWTPHEDDRLRRLARLRPENWNVIAESLPGRTGKQCRERWLNHLQEGIRK
GFWTAREDEIIIQEQARRGNRWSDIARLLPGRSDNAVKNRFNATLKKQYV
RYPY*
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mRNA from alignment at ScGOVlb_425:1238889..1239296+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12730.t1 ID=Gvermi12730.t1|Name=Gvermi12730.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=408bp|location=Sequence derived from alignment at ScGOVlb_425:1238889..1239296+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTGGACTCCACACGAAGACGATCGACTTCGCCGGCTCGCGAGACTGCG
TCCCGAAAACTGGAATGTAATCGCTGAGTCACTTCCCGGTCGCACTGGAA
AGCAATGTCGAGAGAGATGGCTCAATCACTTGCAGGAAGGTATGCGAAAC
CAAGTCTCCTTCTTCTTTAAAAGCACAAAATATATATAATTAGCGGCATC
TATCTAACTGACTCTTCTATTGTCTTGCATAGGGATTCGAAAGGGATTCT
GGACTGCCAGAGAAGATGAAATTATCATTCAGGAACAGGCGCGGCGCGGA
AATCGATGGAGCGACATTGCGCGCCTTCTGCCTGGACGCAGCGACAATGC
TGTCAAGAATCGCTTCAATGCAACGCTCAAAAAGCAATATGTTCGCTATC
CATACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_425:1238889..1239296+

>Gvermi12730.t1 ID=Gvermi12730.t1|Name=Gvermi12730.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=315bp|location=Sequence derived from alignment at ScGOVlb_425:1238889..1239296+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGTGGACTCCACACGAAGACGATCGACTTCGCCGGCTCGCGAGACTGCG
TCCCGAAAACTGGAATGTAATCGCTGAGTCACTTCCCGGTCGCACTGGAA
AGCAATGTCGAGAGAGATGGCTCAATCACTTGCAGGAAGGGATTCGAAAG
GGATTCTGGACTGCCAGAGAAGATGAAATTATCATTCAGGAACAGGCGCG
GCGCGGAAATCGATGGAGCGACATTGCGCGCCTTCTGCCTGGACGCAGCG
ACAATGCTGTCAAGAATCGCTTCAATGCAACGCTCAAAAAGCAATATGTT
CGCTATCCATACTAA
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