Gvermi12718.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12718.t1
Unique NameGvermi12718.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length459
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1113855..1115231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12718Gvermi12718Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_425 1113855..1115231 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12718.t1.start1Gvermi12718.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_425 1113855..1113857 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12718.t1.CDS1Gvermi12718.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_425 1113855..1115231 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12718.t1.exon1Gvermi12718.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_425 1113855..1115231 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12718.t1.stop1Gvermi12718.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_425 1115229..1115231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12718.t1Gvermi12718.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_425 1113855..1115231 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12718.t1 ID=Gvermi12718.t1|Name=Gvermi12718.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=459bp
MSTPRRVSRPKRKPLPVLLPPQSPTEARHELLRHLLPNPPSFTLIPSSSC
ADCFSNYLLFEDTAKHSSLRHLRPLSITLHPSPSSSPPIHIAQKLEQQLQ
HGTQLVFLSFANAVLVHALTTFSCLPQPTPDRRAHPQICFVIAMLPNDEY
KSPSVNSWLWPLGYSEPDPAAPSSGEFLLPSESAAVMLYGAVCGMAATMI
GSDAKTISAAHMFVMPQKVLAVLHRFAQAASNILNGSEHLQQLLDEEQLQ
VADHIYTLRRHALAHILPCGCVMFPYASSPPTSVPKCAPPPAIHVRVLRA
MQLPANQVEQWWQTDRDACEMNYLRQSYLHHLRGADMKVSIRAHLSYLQL
FHAHRPSNALFALSDQMSQSPTRDWELKEAVEWLAKAFRGSEAWVKERMC
SDDSENQRDVFERELAFQVFGRLALFRSRNEVVRKFVSTLETIAGPTRRD
TKGAVEDF*
back to top

spliced messenger RNA

>Gvermi12718.t1 ID=Gvermi12718.t1|Name=Gvermi12718.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1377bp|location=Sequence derived from alignment at ScGOVlb_425:1113855..1115231+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACCCCGCGTCGAGTATCTCGCCCGAAACGCAAACCATTACCGGT
ACTCCTTCCCCCTCAAAGTCCAACGGAGGCGCGCCATGAACTGTTGCGCC
ATTTGCtccccaatcccccatctttcacactcataccctcatccAGCTGT
GCAGACTGCTTTTCAAACTACCTGCTTTTTGAGGACACCGCCAAACATTC
TTCTCTTCGACACCTCCGACCGCTGTCTATCACGTTGCATCCCTCGCCTT
CTTCATCGCCTCCCATTCACATTGCGCAAAAGTTGGAGCAACAACTTCAA
CATGGAACACAACTTGTTTTCCTGTCGTTCGCAAACGCTGTCCTTGTGCA
CGCTCTCACAACCTTCTCATGCCTGCCTCAACCCACGCCAGACAGGCGCG
CTCATCCGCAAATCTGTTTTGTAATCGCTATGCTACCGAATGATGAATAC
AAATCCCCGTCAGTGAACTCGTGGCTTTGGCCTCTGGGGTATTCCGAACC
CGACCCGGCCGCACCTAGCTCTGGGGAATTCCTGCTCCCTAGTGAGTCTG
CAGCTGTGATGCTGTACGGTGCCGTTTGCGGCATGGCCGCCACAATGATT
GGAAGCGACGCGAAGACTATCTCCGCTGCCCATATGTTCGTAATGCCCCA
AAAGGTGTTGGCCGTCCTGCACCGCTTTGCTCAGGCCGCGTCAAATATCC
TCAACGGCAGCGAGCACTTGCAACAGCTTTTGGACGAAGAGCAGCTGCAA
GTGGCGGACCACATTTATACTCTTCGCCGACACGCCTTGGCACACATTCT
GCCATGCGGTTGCGTTATGTTTCCGTACGCGAGTAGCCCACCAACGTCCG
TCCCGAAATGCGCGCCTCCCCCGGCTATACACGTTCGTGTTCTGCGCGCA
ATGCAGCTGCCGGCGAACCAAGTCGAGCAATGGTGGCAGACCGATAGAGA
TGCCTGCGAGATGAACTACCTTCGCCAGAGCTACCTTCACCATCTGCGCG
GGGCGGACATGAAAGTCTCCATCAGAGCTCACCTTAGTTACTTGCAATTA
TTCCATGCGCACAGGCCTAGTAATGCTTTGTTCGCCCTGTCCGACCAAAT
GAGCCAGTCACCCACGAGGGATTGGGAACTGAAGGAGGCCGTCGAATGGC
TTGCGAAGGCTTTCCGTGGATCAGAGGCTTGGGTAAAGGAACGAATGTGT
AGCGACGACAGTGAAAACCAACGTGACGTTTTTGAGAGGGAGTTGGCGTT
CCAAGTGTTTGGCAGATTAGCCTTGTTCAGGTCCAGAAATGAAGTAGTCC
GGAAGTTCGTCAGCACACTCGAAACCATCGCAGGTCCGACACGAAGAGAT
ACAAAAGGGGCTGTAGAGGACTTTTGA
back to top

protein sequence of Gvermi12718.t1

>Gvermi12718.t1 ID=Gvermi12718.t1|Name=Gvermi12718.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=459bp
MSTPRRVSRPKRKPLPVLLPPQSPTEARHELLRHLLPNPPSFTLIPSSSC
ADCFSNYLLFEDTAKHSSLRHLRPLSITLHPSPSSSPPIHIAQKLEQQLQ
HGTQLVFLSFANAVLVHALTTFSCLPQPTPDRRAHPQICFVIAMLPNDEY
KSPSVNSWLWPLGYSEPDPAAPSSGEFLLPSESAAVMLYGAVCGMAATMI
GSDAKTISAAHMFVMPQKVLAVLHRFAQAASNILNGSEHLQQLLDEEQLQ
VADHIYTLRRHALAHILPCGCVMFPYASSPPTSVPKCAPPPAIHVRVLRA
MQLPANQVEQWWQTDRDACEMNYLRQSYLHHLRGADMKVSIRAHLSYLQL
FHAHRPSNALFALSDQMSQSPTRDWELKEAVEWLAKAFRGSEAWVKERMC
SDDSENQRDVFERELAFQVFGRLALFRSRNEVVRKFVSTLETIAGPTRRD
TKGAVEDF*
back to top

mRNA from alignment at ScGOVlb_425:1113855..1115231+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12718.t1 ID=Gvermi12718.t1|Name=Gvermi12718.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1377bp|location=Sequence derived from alignment at ScGOVlb_425:1113855..1115231+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCACCCCGCGTCGAGTATCTCGCCCGAAACGCAAACCATTACCGGT
ACTCCTTCCCCCTCAAAGTCCAACGGAGGCGCGCCATGAACTGTTGCGCC
ATTTGCtccccaatcccccatctttcacactcataccctcatccAGCTGT
GCAGACTGCTTTTCAAACTACCTGCTTTTTGAGGACACCGCCAAACATTC
TTCTCTTCGACACCTCCGACCGCTGTCTATCACGTTGCATCCCTCGCCTT
CTTCATCGCCTCCCATTCACATTGCGCAAAAGTTGGAGCAACAACTTCAA
CATGGAACACAACTTGTTTTCCTGTCGTTCGCAAACGCTGTCCTTGTGCA
CGCTCTCACAACCTTCTCATGCCTGCCTCAACCCACGCCAGACAGGCGCG
CTCATCCGCAAATCTGTTTTGTAATCGCTATGCTACCGAATGATGAATAC
AAATCCCCGTCAGTGAACTCGTGGCTTTGGCCTCTGGGGTATTCCGAACC
CGACCCGGCCGCACCTAGCTCTGGGGAATTCCTGCTCCCTAGTGAGTCTG
CAGCTGTGATGCTGTACGGTGCCGTTTGCGGCATGGCCGCCACAATGATT
GGAAGCGACGCGAAGACTATCTCCGCTGCCCATATGTTCGTAATGCCCCA
AAAGGTGTTGGCCGTCCTGCACCGCTTTGCTCAGGCCGCGTCAAATATCC
TCAACGGCAGCGAGCACTTGCAACAGCTTTTGGACGAAGAGCAGCTGCAA
GTGGCGGACCACATTTATACTCTTCGCCGACACGCCTTGGCACACATTCT
GCCATGCGGTTGCGTTATGTTTCCGTACGCGAGTAGCCCACCAACGTCCG
TCCCGAAATGCGCGCCTCCCCCGGCTATACACGTTCGTGTTCTGCGCGCA
ATGCAGCTGCCGGCGAACCAAGTCGAGCAATGGTGGCAGACCGATAGAGA
TGCCTGCGAGATGAACTACCTTCGCCAGAGCTACCTTCACCATCTGCGCG
GGGCGGACATGAAAGTCTCCATCAGAGCTCACCTTAGTTACTTGCAATTA
TTCCATGCGCACAGGCCTAGTAATGCTTTGTTCGCCCTGTCCGACCAAAT
GAGCCAGTCACCCACGAGGGATTGGGAACTGAAGGAGGCCGTCGAATGGC
TTGCGAAGGCTTTCCGTGGATCAGAGGCTTGGGTAAAGGAACGAATGTGT
AGCGACGACAGTGAAAACCAACGTGACGTTTTTGAGAGGGAGTTGGCGTT
CCAAGTGTTTGGCAGATTAGCCTTGTTCAGGTCCAGAAATGAAGTAGTCC
GGAAGTTCGTCAGCACACTCGAAACCATCGCAGGTCCGACACGAAGAGAT
ACAAAAGGGGCTGTAGAGGACTTTTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_425:1113855..1115231+

>Gvermi12718.t1 ID=Gvermi12718.t1|Name=Gvermi12718.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1377bp|location=Sequence derived from alignment at ScGOVlb_425:1113855..1115231+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCACCCCGCGTCGAGTATCTCGCCCGAAACGCAAACCATTACCGGT
ACTCCTTCCCCCTCAAAGTCCAACGGAGGCGCGCCATGAACTGTTGCGCC
ATTTGCtccccaatcccccatctttcacactcataccctcatccAGCTGT
GCAGACTGCTTTTCAAACTACCTGCTTTTTGAGGACACCGCCAAACATTC
TTCTCTTCGACACCTCCGACCGCTGTCTATCACGTTGCATCCCTCGCCTT
CTTCATCGCCTCCCATTCACATTGCGCAAAAGTTGGAGCAACAACTTCAA
CATGGAACACAACTTGTTTTCCTGTCGTTCGCAAACGCTGTCCTTGTGCA
CGCTCTCACAACCTTCTCATGCCTGCCTCAACCCACGCCAGACAGGCGCG
CTCATCCGCAAATCTGTTTTGTAATCGCTATGCTACCGAATGATGAATAC
AAATCCCCGTCAGTGAACTCGTGGCTTTGGCCTCTGGGGTATTCCGAACC
CGACCCGGCCGCACCTAGCTCTGGGGAATTCCTGCTCCCTAGTGAGTCTG
CAGCTGTGATGCTGTACGGTGCCGTTTGCGGCATGGCCGCCACAATGATT
GGAAGCGACGCGAAGACTATCTCCGCTGCCCATATGTTCGTAATGCCCCA
AAAGGTGTTGGCCGTCCTGCACCGCTTTGCTCAGGCCGCGTCAAATATCC
TCAACGGCAGCGAGCACTTGCAACAGCTTTTGGACGAAGAGCAGCTGCAA
GTGGCGGACCACATTTATACTCTTCGCCGACACGCCTTGGCACACATTCT
GCCATGCGGTTGCGTTATGTTTCCGTACGCGAGTAGCCCACCAACGTCCG
TCCCGAAATGCGCGCCTCCCCCGGCTATACACGTTCGTGTTCTGCGCGCA
ATGCAGCTGCCGGCGAACCAAGTCGAGCAATGGTGGCAGACCGATAGAGA
TGCCTGCGAGATGAACTACCTTCGCCAGAGCTACCTTCACCATCTGCGCG
GGGCGGACATGAAAGTCTCCATCAGAGCTCACCTTAGTTACTTGCAATTA
TTCCATGCGCACAGGCCTAGTAATGCTTTGTTCGCCCTGTCCGACCAAAT
GAGCCAGTCACCCACGAGGGATTGGGAACTGAAGGAGGCCGTCGAATGGC
TTGCGAAGGCTTTCCGTGGATCAGAGGCTTGGGTAAAGGAACGAATGTGT
AGCGACGACAGTGAAAACCAACGTGACGTTTTTGAGAGGGAGTTGGCGTT
CCAAGTGTTTGGCAGATTAGCCTTGTTCAGGTCCAGAAATGAAGTAGTCC
GGAAGTTCGTCAGCACACTCGAAACCATCGCAGGTCCGACACGAAGAGAT
ACAAAAGGGGCTGTAGAGGACTTTTGA
back to top