Gvermi12406.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12406.t1
Unique Name	Gvermi12406.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	628

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:4582838..4584782 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708214.1
Preferred name	fozi-1
PFAMs	CCDC53,Drf_FH3,Drf_GBD,FH2
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04512,ko:K05740,ko:K11238
KEGG Pathway	ko04011,ko04310,ko04510,ko04810,ko04933,ko05131,map04011,map04310,map04510,map04810,map04933,map05131
GOs	GO:0001704,GO:0001707,GO:0001708,GO:0001710,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0007275,GO:0007369,GO:0007498,GO:0007501,GO:0008150,GO:0009653,GO:0009790,GO:0009888,GO:0009987,GO:0010453,GO:0010455,GO:0010470,GO:0022603,GO:0030154,GO:0032501,GO:0032502,GO:0040019,GO:0042659,GO:0042660,GO:0042661,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045165,GO:0045595,GO:0045597,GO:0045995,GO:0048332,GO:0048333,GO:0048337,GO:0048518,GO:0048522,GO:0048598,GO:0048646,GO:0048729,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051239,GO:0051240,GO:0060795,GO:0065007,GO:1905770,GO:1905772,GO:1905902,GO:1905904,GO:2000026,GO:2000027,GO:2000380,GO:2000382,GO:2000543
Evalue	3.38e-33
EggNOG OGs	KOG1923@1\|root,KOG1923@2759\|Eukaryota
Description	Rho GTPase binding
COG category	S
BRITE	ko00000,ko00001,ko03029,ko04147,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12406	Gvermi12406	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 4582838..4587013 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12406.t1	Gvermi12406.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 4582838..4584782 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12406.t1.start1	Gvermi12406.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 4582838..4582840 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12406.t1.CDS1	Gvermi12406.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4582838..4584715 +
Gvermi12406.t1.CDS2	Gvermi12406.t1.CDS2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 4584777..4584782 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12406.t1.exon1	Gvermi12406.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4582838..4584715 +
Gvermi12406.t1.exon2	Gvermi12406.t1.exon2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 4584777..4584782 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12406.t1.intron1	Gvermi12406.t1.intron1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	intron	ScGOVlb_3404 4584716..4584776 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12406.t1.stop1	Gvermi12406.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 4584780..4584782 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:4582838..4584782+
coding sequence from alignment at ScGOVlb_3404:4582838..4584782+

mRNA sequence

>Gvermi12406.t1 ID=Gvermi12406.t1|Name=Gvermi12406.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=628bp
MKGFLQTFYKKPKSSRKVTELVDGVLIALYDPETFKDDMSFALQKIHSKY
GEARHVMLLDVGATGDEEWVKDILPGVLVTTPVSLGPYYLVPSLSSLFEV
CADAYDWLLSGFQSGSQHIVLIITRNQLCEEYRPLTIIALVACAYMAYVC
LTENGIAALEHFKHAVKDAGMCSDRQLQQDILNPNLYQYLRYFTMLRINM
RFPNVRPLQVAKILVQGSVYIDDQPWNPIIRIYQAGNGDIAQCTTIMRSE
EGGADVTVGTGYANFTLNDEIIAGDVVFAFEHWVPLSDVTKPLFIIARHT
GFLEPPYHRVSRKDLETAPGLANKVEFDKHIEVHFFIESVDSPAGVRQDD
FSEEAMVKYADKLGHDKAELIGRVADLYEVVEEIASNAPTAPPPTMQAIV
QPPHAGRNGSANFMDELQQKNAEREKRLQEHQNAFDGDDLQRKAKILEQV
LGFDVGTEGVDEFVQVFMQYNEEVGNDSTIDKIERQKTAKQLLSKTFIGR
RGSVQTTTEVSSEDDGFSDIAKHIDEEELDEEDLEDFSVLQEKLSQKKKP
ESDGSGATEDSEEDEEKRDAGILREAVQVLLKGVKKTGLTDRFRADDALK
NADALHDTEVNENEIITQIAGALEALK*

spliced messenger RNA

>Gvermi12406.t1 ID=Gvermi12406.t1|Name=Gvermi12406.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1884bp|location=Sequence derived from alignment at ScGOVlb_3404:4582838..4584782+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGGCTTCCTGCAGACCTTCTACAAGAAACCCAAGTCCTCGCGCAA
GGTTACCGAGCTCGTCGACGGCGTGCTCATTGCGCTGTACGATCCGGAAA
CCTTCAAGGATGACATGTCCTTTGCTCTTCAGAAGATCCACAGCAAGTAC
GGCGAGGCGCGCCACGTGATGCTGCTGGACGTTGGAGCCACTGGTGATGA
GGAGTGGGTCAAAGACATCCTCCCAGGCGTGCTTGTCACCACCCCCGTCA
GTCTGGGGCCGTACTATCTCGTTCCTTCCCTCTCTTCTCTGTTCGAGGTG
TGCGCCGATGCCTACGACTGGCTCCTAAGTGGTTTCCAGTCTGGCTCGCA
GCACATTGTGCTCATCATCACCCGAAACCAGTTATGCGAAGAGTATCGCC
CGCTCACTATCATTGCGCTCGTTGCCTGCGCGTACATGGCGTACGTGTGT
CTGACCGAAAATGGAATTGCCGCCCTGGAGCACTTCAAACACGCTGTCAA
GGACGCGGGCATGTGCTCCGATCGTCAACTGCAACAGGACATACTGAACC
CCAACCTCTACCAGTATCTGCGTTACTTCACAATGCTGCGCATCAACATG
CGATTCCCAAACGTCCGCCCGCTTCAGGTTGCCAAAATTCTCGTCCAGGG
TTCTGTGTACATAGACGATCAGCCGTGGAACCCGATAATTCGCATCTACC
AGGCCGGCAATGGGGACATTGCTCAGTGCACCACTATTATGCGCTCAGAA
GAAGGCGGCGCAGATGTCACTGTAGGAACCGGCTACGCCAATTTTACGCT
CAACGATGAGATTATTGCAGGTGATGTGGTGTTTGCTTTTGAGCACTGGG
TCCCCTTGAGTGATGTCACCAAACCGCTCTTCATCATTGCAAGACACACG
GGATTCCTCGAACCCCCGTACCATCGGGTGTCTCGAAAGGATCTTGAAAC
TGCACCGGGGCTGGCGAACAAAGTGGAATTTGATAAACATATCGAAGTCC
ACTTTTTCATTGAATCCGTTGACTCTCCGGCAGGTGTCCGCCAAGATGAC
TTTTCGGAAGAAGCTATGGTGAAGTACGCCGATAAGTTGGGTCACGATAA
AGCAGAACTCATCGGTCGAGTGGCAGACTTATACGAAGTTGTGGAAGAGA
TCGCATCGAATGCTCCGACAGCCCCCCCGCCTACAATGCAGGCCATTGTC
CAACCACCGCACGCCGGAAGAAATGGAAGCGCCAACTTTATGGATGAATT
GCAACAGAAAAACGCCGAACGAGAAAAGAGATTGCAGGAGCACCAGAACG
CATTCGACGGCGATGATCTTCAACGTAAGGCGAAAATACTGGAGCAAGTC
CTGGGATTCGATGTGGGAACAGAAGGCGTGGACGAATTTGTCCAAGTCTT
TATGCAGTACAACGAAGAAGTTGGTAATGATTCAACTATAGATAAGATTG
AAAGACAGAAAACAGCAAAACAGCTGCTGTCCAAGACATTCATCGGACGC
CGTGGTTCGGTGCAAACAACTACTGAAGTTTCATCAGAGGATGACGGCTT
CTCAGATATTGCGAAGCATATTGACGAAGAAGAACTCGATGAAGAGGATC
TAGAGGACTTTAGTGTTCTGCAAGAAAAGTTATCCCAAAAGAAAAAACCG
GAATCTGATGGTAGTGGTGCAACTGAAGATAGTGAAGAAGACGAAGAAAA
ACGAGATGCCGGAATTCTTCGGGAAGCAGTCCAAGTACTCCTTAAGGGCG
TAAAGAAGACAGGCCTGACCGATCGTTTTCGTGCAGACGATGCTCTCAAG
AATGCTGACGCCCTTCATGACACCGAAGTCAATGAAAATGAAATTATAAC
TCAGATCGCGGGTGCATTGGAGGCATTGAAGTAG

protein sequence of Gvermi12406.t1

>Gvermi12406.t1 ID=Gvermi12406.t1|Name=Gvermi12406.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=628bp
MKGFLQTFYKKPKSSRKVTELVDGVLIALYDPETFKDDMSFALQKIHSKY
GEARHVMLLDVGATGDEEWVKDILPGVLVTTPVSLGPYYLVPSLSSLFEV
CADAYDWLLSGFQSGSQHIVLIITRNQLCEEYRPLTIIALVACAYMAYVC
LTENGIAALEHFKHAVKDAGMCSDRQLQQDILNPNLYQYLRYFTMLRINM
RFPNVRPLQVAKILVQGSVYIDDQPWNPIIRIYQAGNGDIAQCTTIMRSE
EGGADVTVGTGYANFTLNDEIIAGDVVFAFEHWVPLSDVTKPLFIIARHT
GFLEPPYHRVSRKDLETAPGLANKVEFDKHIEVHFFIESVDSPAGVRQDD
FSEEAMVKYADKLGHDKAELIGRVADLYEVVEEIASNAPTAPPPTMQAIV
QPPHAGRNGSANFMDELQQKNAEREKRLQEHQNAFDGDDLQRKAKILEQV
LGFDVGTEGVDEFVQVFMQYNEEVGNDSTIDKIERQKTAKQLLSKTFIGR
RGSVQTTTEVSSEDDGFSDIAKHIDEEELDEEDLEDFSVLQEKLSQKKKP
ESDGSGATEDSEEDEEKRDAGILREAVQVLLKGVKKTGLTDRFRADDALK
NADALHDTEVNENEIITQIAGALEALK*

mRNA from alignment at ScGOVlb_3404:4582838..4584782+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12406.t1 ID=Gvermi12406.t1|Name=Gvermi12406.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1945bp|location=Sequence derived from alignment at ScGOVlb_3404:4582838..4584782+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGGGCTTCCTGCAGACCTTCTACAAGAAACCCAAGTCCTCGCGCAA
GGTTACCGAGCTCGTCGACGGCGTGCTCATTGCGCTGTACGATCCGGAAA
CCTTCAAGGATGACATGTCCTTTGCTCTTCAGAAGATCCACAGCAAGTAC
GGCGAGGCGCGCCACGTGATGCTGCTGGACGTTGGAGCCACTGGTGATGA
GGAGTGGGTCAAAGACATCCTCCCAGGCGTGCTTGTCACCACCCCCGTCA
GTCTGGGGCCGTACTATCTCGTTCCTTCCCTCTCTTCTCTGTTCGAGGTG
TGCGCCGATGCCTACGACTGGCTCCTAAGTGGTTTCCAGTCTGGCTCGCA
GCACATTGTGCTCATCATCACCCGAAACCAGTTATGCGAAGAGTATCGCC
CGCTCACTATCATTGCGCTCGTTGCCTGCGCGTACATGGCGTACGTGTGT
CTGACCGAAAATGGAATTGCCGCCCTGGAGCACTTCAAACACGCTGTCAA
GGACGCGGGCATGTGCTCCGATCGTCAACTGCAACAGGACATACTGAACC
CCAACCTCTACCAGTATCTGCGTTACTTCACAATGCTGCGCATCAACATG
CGATTCCCAAACGTCCGCCCGCTTCAGGTTGCCAAAATTCTCGTCCAGGG
TTCTGTGTACATAGACGATCAGCCGTGGAACCCGATAATTCGCATCTACC
AGGCCGGCAATGGGGACATTGCTCAGTGCACCACTATTATGCGCTCAGAA
GAAGGCGGCGCAGATGTCACTGTAGGAACCGGCTACGCCAATTTTACGCT
CAACGATGAGATTATTGCAGGTGATGTGGTGTTTGCTTTTGAGCACTGGG
TCCCCTTGAGTGATGTCACCAAACCGCTCTTCATCATTGCAAGACACACG
GGATTCCTCGAACCCCCGTACCATCGGGTGTCTCGAAAGGATCTTGAAAC
TGCACCGGGGCTGGCGAACAAAGTGGAATTTGATAAACATATCGAAGTCC
ACTTTTTCATTGAATCCGTTGACTCTCCGGCAGGTGTCCGCCAAGATGAC
TTTTCGGAAGAAGCTATGGTGAAGTACGCCGATAAGTTGGGTCACGATAA
AGCAGAACTCATCGGTCGAGTGGCAGACTTATACGAAGTTGTGGAAGAGA
TCGCATCGAATGCTCCGACAGCCCCCCCGCCTACAATGCAGGCCATTGTC
CAACCACCGCACGCCGGAAGAAATGGAAGCGCCAACTTTATGGATGAATT
GCAACAGAAAAACGCCGAACGAGAAAAGAGATTGCAGGAGCACCAGAACG
CATTCGACGGCGATGATCTTCAACGTAAGGCGAAAATACTGGAGCAAGTC
CTGGGATTCGATGTGGGAACAGAAGGCGTGGACGAATTTGTCCAAGTCTT
TATGCAGTACAACGAAGAAGTTGGTAATGATTCAACTATAGATAAGATTG
AAAGACAGAAAACAGCAAAACAGCTGCTGTCCAAGACATTCATCGGACGC
CGTGGTTCGGTGCAAACAACTACTGAAGTTTCATCAGAGGATGACGGCTT
CTCAGATATTGCGAAGCATATTGACGAAGAAGAACTCGATGAAGAGGATC
TAGAGGACTTTAGTGTTCTGCAAGAAAAGTTATCCCAAAAGAAAAAACCG
GAATCTGATGGTAGTGGTGCAACTGAAGATAGTGAAGAAGACGAAGAAAA
ACGAGATGCCGGAATTCTTCGGGAAGCAGTCCAAGTACTCCTTAAGGGCG
TAAAGAAGACAGGCCTGACCGATCGTTTTCGTGCAGACGATGCTCTCAAG
AATGCTGACGCCCTTCATGACACCGAAGTCAATGAAAATGAAATTATAAC
TCAGATCGCGGGTGCATTGGAGGCATTGGTCAGGGAGTCGAAGACAAGCG
CTGGAGATGGAGGCGGCCGAAAGTTCTTTTCGACTCAAGAAGTAG

Coding sequence (CDS) from alignment at ScGOVlb_3404:4582838..4584782+

>Gvermi12406.t1 ID=Gvermi12406.t1|Name=Gvermi12406.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1884bp|location=Sequence derived from alignment at ScGOVlb_3404:4582838..4584782+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGGGCTTCCTGCAGACCTTCTACAAGAAACCCAAGTCCTCGCGCAA
GGTTACCGAGCTCGTCGACGGCGTGCTCATTGCGCTGTACGATCCGGAAA
CCTTCAAGGATGACATGTCCTTTGCTCTTCAGAAGATCCACAGCAAGTAC
GGCGAGGCGCGCCACGTGATGCTGCTGGACGTTGGAGCCACTGGTGATGA
GGAGTGGGTCAAAGACATCCTCCCAGGCGTGCTTGTCACCACCCCCGTCA
GTCTGGGGCCGTACTATCTCGTTCCTTCCCTCTCTTCTCTGTTCGAGGTG
TGCGCCGATGCCTACGACTGGCTCCTAAGTGGTTTCCAGTCTGGCTCGCA
GCACATTGTGCTCATCATCACCCGAAACCAGTTATGCGAAGAGTATCGCC
CGCTCACTATCATTGCGCTCGTTGCCTGCGCGTACATGGCGTACGTGTGT
CTGACCGAAAATGGAATTGCCGCCCTGGAGCACTTCAAACACGCTGTCAA
GGACGCGGGCATGTGCTCCGATCGTCAACTGCAACAGGACATACTGAACC
CCAACCTCTACCAGTATCTGCGTTACTTCACAATGCTGCGCATCAACATG
CGATTCCCAAACGTCCGCCCGCTTCAGGTTGCCAAAATTCTCGTCCAGGG
TTCTGTGTACATAGACGATCAGCCGTGGAACCCGATAATTCGCATCTACC
AGGCCGGCAATGGGGACATTGCTCAGTGCACCACTATTATGCGCTCAGAA
GAAGGCGGCGCAGATGTCACTGTAGGAACCGGCTACGCCAATTTTACGCT
CAACGATGAGATTATTGCAGGTGATGTGGTGTTTGCTTTTGAGCACTGGG
TCCCCTTGAGTGATGTCACCAAACCGCTCTTCATCATTGCAAGACACACG
GGATTCCTCGAACCCCCGTACCATCGGGTGTCTCGAAAGGATCTTGAAAC
TGCACCGGGGCTGGCGAACAAAGTGGAATTTGATAAACATATCGAAGTCC
ACTTTTTCATTGAATCCGTTGACTCTCCGGCAGGTGTCCGCCAAGATGAC
TTTTCGGAAGAAGCTATGGTGAAGTACGCCGATAAGTTGGGTCACGATAA
AGCAGAACTCATCGGTCGAGTGGCAGACTTATACGAAGTTGTGGAAGAGA
TCGCATCGAATGCTCCGACAGCCCCCCCGCCTACAATGCAGGCCATTGTC
CAACCACCGCACGCCGGAAGAAATGGAAGCGCCAACTTTATGGATGAATT
GCAACAGAAAAACGCCGAACGAGAAAAGAGATTGCAGGAGCACCAGAACG
CATTCGACGGCGATGATCTTCAACGTAAGGCGAAAATACTGGAGCAAGTC
CTGGGATTCGATGTGGGAACAGAAGGCGTGGACGAATTTGTCCAAGTCTT
TATGCAGTACAACGAAGAAGTTGGTAATGATTCAACTATAGATAAGATTG
AAAGACAGAAAACAGCAAAACAGCTGCTGTCCAAGACATTCATCGGACGC
CGTGGTTCGGTGCAAACAACTACTGAAGTTTCATCAGAGGATGACGGCTT
CTCAGATATTGCGAAGCATATTGACGAAGAAGAACTCGATGAAGAGGATC
TAGAGGACTTTAGTGTTCTGCAAGAAAAGTTATCCCAAAAGAAAAAACCG
GAATCTGATGGTAGTGGTGCAACTGAAGATAGTGAAGAAGACGAAGAAAA
ACGAGATGCCGGAATTCTTCGGGAAGCAGTCCAAGTACTCCTTAAGGGCG
TAAAGAAGACAGGCCTGACCGATCGTTTTCGTGCAGACGATGCTCTCAAG
AATGCTGACGCCCTTCATGACACCGAAGTCAATGAAAATGAAATTATAAC
TCAGATCGCGGGTGCATTGGAGGCATTGAAGTAG