Gvermi12371.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12371.t1
Unique NameGvermi12371.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length457
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4390331..4391803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703223.1
PFAMsWAK_assoc,zf-RING_2
Max annot lvl2759|Eukaryota
KEGG koko:K11982
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005794,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0012505,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0023051,GO:0023057,GO:0030111,GO:0030178,GO:0031410,GO:0031982,GO:0032446,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0065007,GO:0070647,GO:0071704,GO:0097708,GO:0140096,GO:1901564
Evalue1.07e-15
EggNOG OGsKOG0800@1|root,KOG0800@2759|Eukaryota
EC2.3.2.27
Descriptionubiquitin-protein transferase activity
COG categoryO
BRITEko00000,ko01000,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12371Gvermi12371Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4390331..4391803 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12371.t1Gvermi12371.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4390331..4391803 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12371.t1.stop1Gvermi12371.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4390331..4390333 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12371.t1.CDS1Gvermi12371.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4390331..4390422 -
Gvermi12371.t1.CDS2Gvermi12371.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4390525..4391803 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12371.t1.exon1Gvermi12371.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4390331..4390422 -
Gvermi12371.t1.exon2Gvermi12371.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4390525..4391803 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12371.t1.intron1Gvermi12371.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4390423..4390524 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12371.t1.start1Gvermi12371.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4391801..4391803 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12371.t1 ID=Gvermi12371.t1|Name=Gvermi12371.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=457bp
MASQPRPQSSGSRPQHTPRLVELDQILARNPCMSTHGSGDLQTNSRAIPF
TPALRPSSVNSTVYSDGNPLRHNPSVPRRYVHLERNQGAMLGRDTTPSFV
HTGTVRRSYPSSAETPSRHGIGTESRHSAVPNHLLGSTEPRVNPLRHNNQ
SETSQSLQNVNNTVRPVEGQRHNYSIEALTNPTTAGGNRPDSSVPGSVGL
LGERMPQVRRMDSPTQIRLMQYRRERELRHLRRVRYQPPPRPSPANNTRV
WSYALPSMEAINAQNREGAEQVIRRSAEQALRRGAEQALRRSAEQALRRG
AMRMRAARSAATGSGNTSPHVRGSHEDAPVVHRMIHVNRAGLQIHYFHED
HDTDHFLDYEHLIRLDDQLVREKNRADKDQIDSLPTKKATVEDKEIRCCI
CMCDVEEGEELRILPCSHKYHKSCIDEWLTYNGCCPVDKKRIAPNRPRRR
SARLRS*
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spliced messenger RNA

>Gvermi12371.t1 ID=Gvermi12371.t1|Name=Gvermi12371.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1371bp|location=Sequence derived from alignment at ScGOVlb_3404:4390331..4391803- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCCCAACCAAGGCCGCAGTCGAGCGGTTCAAGACCACAGCACAC
CCCACGTCTTGTCGAGCTTGATCAAATACTAGCAAGGAATCCTTGCATGT
CTACTCATGGTTCCGGCGATCTGCAAACCAATTCTCGTGCCATACCTTTC
ACACCAGCATTGCGCCCCTCGTCTGTCAACTCCACCGTGTATTCAGACGG
CAATCCGCTCCGACACAATCCATCGGTCCCGCGTCGATACGTTCATTTGG
AGCGCAACCAGGGAGCCATGCTTGGTCGAGATACAACCCCATCCTTTGTT
CACACTGGCACTGTGCGACGTTCGTATCCTTCTTCAGCGGAGACGCCATC
AAGGCACGGTATAGGTACCGAGTCCCGCCATTCTGCGGTCCCAAATCACT
TACTTGGATCTACTGAACCTCGCGTAAACCCATTGCGACACAACAACCAA
TCCGAAACGAGTCAGTCTCTCCAAAATGTGAACAATACTGTTCGGCCGGT
CGAAGGCCAGCGTCACAATTACTCCATAGAAGCGCTGACAAATCCGACGA
CTGCGGGTGGCAATAGGCCGGACTCATCTGTTCCGGGGAGTGTAGGGTTG
CTTGGGGAACGGATGCCACAAGTAAGACGTATGGATTCGCCAACACAAAT
ACGTCTCATGCAGTACCGACGCGAGCGCGAACTTCGTCATCTTCGTCGAG
TTCGTTATCAACCTCCTCCTCGACCTAGCCCGGCCAACAATACCCGAGTT
TGGAGCTACGCCCTGCCTTCAATGGAAGCCATCAATGCCCAGAACCGAGA
GGGTGCCGAGCAAGTCATACGTCGAAGTGCCGAGCAAGCCCTACGTCGAG
GTGCCGAGCAAGCCCTGCGTCGAAGTGCCGAGCAAGCCCTACGTCGAGGT
GCCATGAGGATGAGGGCCGCACGAAGTGCCGCTACTGGCTCAGGTAATAC
CTCTCCTCATGTTCGTGGTTCTCATGAAGATGCCCCCGTAGTGCATCGCA
TGATACATGTGAACCGGGCAGGCCTTCAAATCCACTATTTCCACGAAGAT
CATGATACGGATCATTTTCTTGACTATGAACACCTGATACGTCTTGACGA
TCAACTCGTTCGAGAGAAGAATCGTGCGGACAAGGATCAAATTGATTCTT
TACCGACGAAGAAAGCAACTGTGGAAGACAAGGAAATACGATGTTGCATT
TGCATGTGTGATGTTGAAGAAGGAGAAGAACTTCGAATTCTTCCTTGCTC
ACACAAATATCACAAGAGTTGTATTGACGAATGGCTCACGTACAACGGAT
GCTGTCCTGTCGATAAGAAGAGGATCGCCCCAAATCGTCCGAGAAGAAGA
AGCGCCCGTCTCAGATCTTAA
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protein sequence of Gvermi12371.t1

>Gvermi12371.t1 ID=Gvermi12371.t1|Name=Gvermi12371.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=457bp
MASQPRPQSSGSRPQHTPRLVELDQILARNPCMSTHGSGDLQTNSRAIPF
TPALRPSSVNSTVYSDGNPLRHNPSVPRRYVHLERNQGAMLGRDTTPSFV
HTGTVRRSYPSSAETPSRHGIGTESRHSAVPNHLLGSTEPRVNPLRHNNQ
SETSQSLQNVNNTVRPVEGQRHNYSIEALTNPTTAGGNRPDSSVPGSVGL
LGERMPQVRRMDSPTQIRLMQYRRERELRHLRRVRYQPPPRPSPANNTRV
WSYALPSMEAINAQNREGAEQVIRRSAEQALRRGAEQALRRSAEQALRRG
AMRMRAARSAATGSGNTSPHVRGSHEDAPVVHRMIHVNRAGLQIHYFHED
HDTDHFLDYEHLIRLDDQLVREKNRADKDQIDSLPTKKATVEDKEIRCCI
CMCDVEEGEELRILPCSHKYHKSCIDEWLTYNGCCPVDKKRIAPNRPRRR
SARLRS*
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mRNA from alignment at ScGOVlb_3404:4390331..4391803-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12371.t1 ID=Gvermi12371.t1|Name=Gvermi12371.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1473bp|location=Sequence derived from alignment at ScGOVlb_3404:4390331..4391803- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCATCCCAACCAAGGCCGCAGTCGAGCGGTTCAAGACCACAGCACAC
CCCACGTCTTGTCGAGCTTGATCAAATACTAGCAAGGAATCCTTGCATGT
CTACTCATGGTTCCGGCGATCTGCAAACCAATTCTCGTGCCATACCTTTC
ACACCAGCATTGCGCCCCTCGTCTGTCAACTCCACCGTGTATTCAGACGG
CAATCCGCTCCGACACAATCCATCGGTCCCGCGTCGATACGTTCATTTGG
AGCGCAACCAGGGAGCCATGCTTGGTCGAGATACAACCCCATCCTTTGTT
CACACTGGCACTGTGCGACGTTCGTATCCTTCTTCAGCGGAGACGCCATC
AAGGCACGGTATAGGTACCGAGTCCCGCCATTCTGCGGTCCCAAATCACT
TACTTGGATCTACTGAACCTCGCGTAAACCCATTGCGACACAACAACCAA
TCCGAAACGAGTCAGTCTCTCCAAAATGTGAACAATACTGTTCGGCCGGT
CGAAGGCCAGCGTCACAATTACTCCATAGAAGCGCTGACAAATCCGACGA
CTGCGGGTGGCAATAGGCCGGACTCATCTGTTCCGGGGAGTGTAGGGTTG
CTTGGGGAACGGATGCCACAAGTAAGACGTATGGATTCGCCAACACAAAT
ACGTCTCATGCAGTACCGACGCGAGCGCGAACTTCGTCATCTTCGTCGAG
TTCGTTATCAACCTCCTCCTCGACCTAGCCCGGCCAACAATACCCGAGTT
TGGAGCTACGCCCTGCCTTCAATGGAAGCCATCAATGCCCAGAACCGAGA
GGGTGCCGAGCAAGTCATACGTCGAAGTGCCGAGCAAGCCCTACGTCGAG
GTGCCGAGCAAGCCCTGCGTCGAAGTGCCGAGCAAGCCCTACGTCGAGGT
GCCATGAGGATGAGGGCCGCACGAAGTGCCGCTACTGGCTCAGGTAATAC
CTCTCCTCATGTTCGTGGTTCTCATGAAGATGCCCCCGTAGTGCATCGCA
TGATACATGTGAACCGGGCAGGCCTTCAAATCCACTATTTCCACGAAGAT
CATGATACGGATCATTTTCTTGACTATGAACACCTGATACGTCTTGACGA
TCAACTCGTTCGAGAGAAGAATCGTGCGGACAAGGATCAAATTGATTCTT
TACCGACGAAGAAAGCAACTGTGGAAGACAAGGAAATACGATGTTGCATT
TGCATGTGTGATGTTGAAGAAGGAGAAGAACTTCGAATTCTTCCTTGCTC
ACACAAATATCACAAGAGTTGTATTGACGGTAAGTAATCTTTTTCATTTT
GATGGAAATTCCTTTACGTGCTTTCATCAGTTTCGAATTGTCTAACAAAT
ATTATGTTTCTCACTCTTTTCGTCCCTGCAGAATGGCTCACGTACAACGG
ATGCTGTCCTGTCGATAAGAAGAGGATCGCCCCAAATCGTCCGAGAAGAA
GAAGCGCCCGTCTCAGATCTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4390331..4391803-

>Gvermi12371.t1 ID=Gvermi12371.t1|Name=Gvermi12371.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1371bp|location=Sequence derived from alignment at ScGOVlb_3404:4390331..4391803- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCATCCCAACCAAGGCCGCAGTCGAGCGGTTCAAGACCACAGCACAC
CCCACGTCTTGTCGAGCTTGATCAAATACTAGCAAGGAATCCTTGCATGT
CTACTCATGGTTCCGGCGATCTGCAAACCAATTCTCGTGCCATACCTTTC
ACACCAGCATTGCGCCCCTCGTCTGTCAACTCCACCGTGTATTCAGACGG
CAATCCGCTCCGACACAATCCATCGGTCCCGCGTCGATACGTTCATTTGG
AGCGCAACCAGGGAGCCATGCTTGGTCGAGATACAACCCCATCCTTTGTT
CACACTGGCACTGTGCGACGTTCGTATCCTTCTTCAGCGGAGACGCCATC
AAGGCACGGTATAGGTACCGAGTCCCGCCATTCTGCGGTCCCAAATCACT
TACTTGGATCTACTGAACCTCGCGTAAACCCATTGCGACACAACAACCAA
TCCGAAACGAGTCAGTCTCTCCAAAATGTGAACAATACTGTTCGGCCGGT
CGAAGGCCAGCGTCACAATTACTCCATAGAAGCGCTGACAAATCCGACGA
CTGCGGGTGGCAATAGGCCGGACTCATCTGTTCCGGGGAGTGTAGGGTTG
CTTGGGGAACGGATGCCACAAGTAAGACGTATGGATTCGCCAACACAAAT
ACGTCTCATGCAGTACCGACGCGAGCGCGAACTTCGTCATCTTCGTCGAG
TTCGTTATCAACCTCCTCCTCGACCTAGCCCGGCCAACAATACCCGAGTT
TGGAGCTACGCCCTGCCTTCAATGGAAGCCATCAATGCCCAGAACCGAGA
GGGTGCCGAGCAAGTCATACGTCGAAGTGCCGAGCAAGCCCTACGTCGAG
GTGCCGAGCAAGCCCTGCGTCGAAGTGCCGAGCAAGCCCTACGTCGAGGT
GCCATGAGGATGAGGGCCGCACGAAGTGCCGCTACTGGCTCAGGTAATAC
CTCTCCTCATGTTCGTGGTTCTCATGAAGATGCCCCCGTAGTGCATCGCA
TGATACATGTGAACCGGGCAGGCCTTCAAATCCACTATTTCCACGAAGAT
CATGATACGGATCATTTTCTTGACTATGAACACCTGATACGTCTTGACGA
TCAACTCGTTCGAGAGAAGAATCGTGCGGACAAGGATCAAATTGATTCTT
TACCGACGAAGAAAGCAACTGTGGAAGACAAGGAAATACGATGTTGCATT
TGCATGTGTGATGTTGAAGAAGGAGAAGAACTTCGAATTCTTCCTTGCTC
ACACAAATATCACAAGAGTTGTATTGACGAATGGCTCACGTACAACGGAT
GCTGTCCTGTCGATAAGAAGAGGATCGCCCCAAATCGTCCGAGAAGAAGA
AGCGCCCGTCTCAGATCTTAA
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