Gvermi12324.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12324.t1
Unique NameGvermi12324.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length269
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4223723..4224529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1177928.TH2_07976
PFAMsHNH_5
Max annot lvl204441|Rhodospirillales
Evalue1.95e-77
EggNOG OGsCOG1403@1|root,COG1403@2|Bacteria,1MWEQ@1224|Proteobacteria,2TR3M@28211|Alphaproteobacteria,2JQFA@204441|Rhodospirillales
DescriptionHNH endonuclease
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12324Gvermi12324Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4223723..4224529 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12324.t1.stop1Gvermi12324.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4223723..4223725 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12324.t1.CDS1Gvermi12324.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4223723..4224529 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12324.t1.exon1Gvermi12324.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4223723..4224529 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12324.t1.start1Gvermi12324.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4224527..4224529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12324.t1Gvermi12324.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4223723..4224529 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12324.t1 ID=Gvermi12324.t1|Name=Gvermi12324.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=269bp
MALGVPMAFGAAQPLALPCLPQRATLRTSTAVIVARVRRKSRPVPARYTL
LAEKWTRVRTRHGVKKGGGDDDRSVRHASELRPESCPALVLNADFSPLSY
MPLSLWPWQEVVKAVFLDRVTVVETYDVGVRSPSMELALPSVVSLKEYKQ
VAKRAPAFSRFNVFLRDVFSCQYCGRRFETQELTFDHVIPRCKGGKTNWH
NVVTACVKCNHRKGRYLLAELKDMRLKREPRRPSNFELQTNAKKFPPRNL
HDSWRDYVYWSHSMHLDD*
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spliced messenger RNA

>Gvermi12324.t1 ID=Gvermi12324.t1|Name=Gvermi12324.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=807bp|location=Sequence derived from alignment at ScGOVlb_3404:4223723..4224529- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTCGGAGTACCCATGGCGTTCGGCGCGGCGCAGCCGCTGGCGTT
GCCGTGCCTGCCGCAGCGCGCCACGCTGCGCACGTCCACGGCAGTGATTG
TGGCTCGCGTGCGGCGCAAGTCGCGCCCTGTGCCGGCGCGCTACACGCTG
CTCGCCGAGAAGTGGACGCGCGTGCGCACGCGGCACGGCGTCAAAAAGGG
CGGCGGCGACGACGACAGAAGCGTGCGGCACGCGTCGGAGCTGCGTCCCG
AGTCGTGCCCCGCGCTCGTTCTCAACGCTGACTTCTCGCCGCTTTCGTAC
ATGCCGCTGAGTCTGTGGCCGTGGCAGGAGGTTGTCAAGGCGGTGTTTCT
GGACCGCGTCACGGTGGTGGAGACGTACGACGTGGGCGTGCGCAGCCCCA
GCATGGAGTTGGCGCTGCCGAGCGTGGTGTCGCTCAAGGAGTACAAGCAG
GTTGCCAAGCGCGCGCCGGCGTTCTCACGGTTCAATGTGTTCCTTCGCGA
CGTGTTCTCGTGCCAGTACTGCGGGCGGCGCTTCGAGACGCAGGAGCTGA
CGTTCGATCATGTGATTCCGCGGTGCAAGGGCGGCAAGACCAACTGGCAC
AACGTGGTGACGGCATGCGTCAAGTGCAACCACCGCAAGGGGCGCTACCT
GCTCGCCGAGCTCAAGGACATGCGGCTGAAGCGCGAGCCGAGACGGCCGT
CCAATTTTGAGCTGCAGACCAACGCGAAGAAGTTCCCGCCGCGCAACCTG
CACGACAGCTGGAGGGATTACGTGTACTGGTCGCACTCCATGCACCTCGA
CGACTAG
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protein sequence of Gvermi12324.t1

>Gvermi12324.t1 ID=Gvermi12324.t1|Name=Gvermi12324.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=269bp
MALGVPMAFGAAQPLALPCLPQRATLRTSTAVIVARVRRKSRPVPARYTL
LAEKWTRVRTRHGVKKGGGDDDRSVRHASELRPESCPALVLNADFSPLSY
MPLSLWPWQEVVKAVFLDRVTVVETYDVGVRSPSMELALPSVVSLKEYKQ
VAKRAPAFSRFNVFLRDVFSCQYCGRRFETQELTFDHVIPRCKGGKTNWH
NVVTACVKCNHRKGRYLLAELKDMRLKREPRRPSNFELQTNAKKFPPRNL
HDSWRDYVYWSHSMHLDD*
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mRNA from alignment at ScGOVlb_3404:4223723..4224529-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12324.t1 ID=Gvermi12324.t1|Name=Gvermi12324.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=807bp|location=Sequence derived from alignment at ScGOVlb_3404:4223723..4224529- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCTCGGAGTACCCATGGCGTTCGGCGCGGCGCAGCCGCTGGCGTT
GCCGTGCCTGCCGCAGCGCGCCACGCTGCGCACGTCCACGGCAGTGATTG
TGGCTCGCGTGCGGCGCAAGTCGCGCCCTGTGCCGGCGCGCTACACGCTG
CTCGCCGAGAAGTGGACGCGCGTGCGCACGCGGCACGGCGTCAAAAAGGG
CGGCGGCGACGACGACAGAAGCGTGCGGCACGCGTCGGAGCTGCGTCCCG
AGTCGTGCCCCGCGCTCGTTCTCAACGCTGACTTCTCGCCGCTTTCGTAC
ATGCCGCTGAGTCTGTGGCCGTGGCAGGAGGTTGTCAAGGCGGTGTTTCT
GGACCGCGTCACGGTGGTGGAGACGTACGACGTGGGCGTGCGCAGCCCCA
GCATGGAGTTGGCGCTGCCGAGCGTGGTGTCGCTCAAGGAGTACAAGCAG
GTTGCCAAGCGCGCGCCGGCGTTCTCACGGTTCAATGTGTTCCTTCGCGA
CGTGTTCTCGTGCCAGTACTGCGGGCGGCGCTTCGAGACGCAGGAGCTGA
CGTTCGATCATGTGATTCCGCGGTGCAAGGGCGGCAAGACCAACTGGCAC
AACGTGGTGACGGCATGCGTCAAGTGCAACCACCGCAAGGGGCGCTACCT
GCTCGCCGAGCTCAAGGACATGCGGCTGAAGCGCGAGCCGAGACGGCCGT
CCAATTTTGAGCTGCAGACCAACGCGAAGAAGTTCCCGCCGCGCAACCTG
CACGACAGCTGGAGGGATTACGTGTACTGGTCGCACTCCATGCACCTCGA
CGACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4223723..4224529-

>Gvermi12324.t1 ID=Gvermi12324.t1|Name=Gvermi12324.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=807bp|location=Sequence derived from alignment at ScGOVlb_3404:4223723..4224529- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCTCGGAGTACCCATGGCGTTCGGCGCGGCGCAGCCGCTGGCGTT
GCCGTGCCTGCCGCAGCGCGCCACGCTGCGCACGTCCACGGCAGTGATTG
TGGCTCGCGTGCGGCGCAAGTCGCGCCCTGTGCCGGCGCGCTACACGCTG
CTCGCCGAGAAGTGGACGCGCGTGCGCACGCGGCACGGCGTCAAAAAGGG
CGGCGGCGACGACGACAGAAGCGTGCGGCACGCGTCGGAGCTGCGTCCCG
AGTCGTGCCCCGCGCTCGTTCTCAACGCTGACTTCTCGCCGCTTTCGTAC
ATGCCGCTGAGTCTGTGGCCGTGGCAGGAGGTTGTCAAGGCGGTGTTTCT
GGACCGCGTCACGGTGGTGGAGACGTACGACGTGGGCGTGCGCAGCCCCA
GCATGGAGTTGGCGCTGCCGAGCGTGGTGTCGCTCAAGGAGTACAAGCAG
GTTGCCAAGCGCGCGCCGGCGTTCTCACGGTTCAATGTGTTCCTTCGCGA
CGTGTTCTCGTGCCAGTACTGCGGGCGGCGCTTCGAGACGCAGGAGCTGA
CGTTCGATCATGTGATTCCGCGGTGCAAGGGCGGCAAGACCAACTGGCAC
AACGTGGTGACGGCATGCGTCAAGTGCAACCACCGCAAGGGGCGCTACCT
GCTCGCCGAGCTCAAGGACATGCGGCTGAAGCGCGAGCCGAGACGGCCGT
CCAATTTTGAGCTGCAGACCAACGCGAAGAAGTTCCCGCCGCGCAACCTG
CACGACAGCTGGAGGGATTACGTGTACTGGTCGCACTCCATGCACCTCGA
CGACTAG
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