Gvermi12324.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12324.t1
Unique NameGvermi12324.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length269
Homology
BLAST of Gvermi12324.t1 vs. uniprot
Match: A0A2V3J082_9FLOR (HNHc domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J082_9FLOR)

HSP 1 Score: 357 bits (917), Expect = 5.800e-122
Identity = 179/264 (67.80%), Postives = 210/264 (79.55%), Query Frame = 0
Query:    8 AFGAAQPLALPCLPQRATLRTST-AVIVARV---RRKSRPVPARYTLLAEKWTRVRTRHGVKKGGGDDDRSVRHASELRPESCPALVLNADFSPLSYMPLSLWPWQEVVKAVFLDRVTVVETYDVGVRSPSMELALPSVVSLKEYKQVAKRAPAFSRFNVFLRDVFSCQYCGRRFETQELTFDHVIPRCKGGKTNWHNVVTACVKCNHRKGRYLLAELKDMRLKREPRRPSNFELQTNAKKFPPRNLHDSWRDYVYWSHSMHLD 267
            AF AAQPL +     RA    ST ++++ARV    RK+R    R +  A+KW RV+   G       +D+ + HASELRPESCPALVLNADFSPLSYMPLSLWPWQEVVKAVFL+RVTVV TYDVGVRSPSM   LPSVVSLK+Y+ + +R+PAFSRFNVFLRD+FSCQYCGRRF TQELT+DHVIPRCKGGKTNW NVVTACV CNHRKGR LL+E+ ++RL+  PR+P+NFELQ NAK+FPPR LH +WRDYVYWSH M ++
Sbjct:    8 AFAAAQPLVVGA---RAAAGGSTRSIVLARVSHRNRKARSTATRRSRQADKWKRVQP--GEWLANFAEDKRIEHASELRPESCPALVLNADFSPLSYMPLSLWPWQEVVKAVFLERVTVVATYDVGVRSPSMVFPLPSVVSLKQYQPMGRRSPAFSRFNVFLRDMFSCQYCGRRFATQELTYDHVIPRCKGGKTNWQNVVTACVSCNHRKGRLLLSEMAELRLRTAPRQPTNFELQANAKRFPPRYLHHTWRDYVYWSHGMRIE 266          
BLAST of Gvermi12324.t1 vs. uniprot
Match: R7QKE3_CHOCR (HNHc domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKE3_CHOCR)

HSP 1 Score: 317 bits (812), Expect = 7.200e-106
Identity = 152/223 (68.16%), Postives = 174/223 (78.03%), Query Frame = 0
Query:   49 TLLAEKWTRVRTRHGVKKGGGDDDRSVR----HASELRPESCPALVLNADFSPLSYMPLSLWPWQEVVKAVFLDRVTVVETYDVGVRSPSMELALPSVVSLKEYKQVAKRAPAFSRFNVFLRDVFSCQYCGRRFETQELTFDHVIPRCKGGKTNWHNVVTACVKCNHRKGRYLLAELKDMRLKREPRRPSNFELQTNAKKFPPRNLHDSWRDYVYWSHSMHLD 267
            ++ A KW+RV             D S+R    H S+LRPESCPALVLNADFSPLSYMPLSLWPWQ+ +KAVFLDRVTVV TYD+GVRSP M   LPSV+SLK+Y+  A++ PAFSRFNVF+RD FSCQYCGRRF TQELTFDHVIPRC GGKTNW NVVTAC+ CNH KGRYLL ELK M+L R P  P+N +LQ  A+ FPPR LH+SWRDYVYWS SM ++
Sbjct:   66 SIAANKWSRV-------------DPSLRNEVSHPSDLRPESCPALVLNADFSPLSYMPLSLWPWQDAIKAVFLDRVTVVATYDIGVRSPGMIFPLPSVISLKQYQPRARKRPAFSRFNVFMRDAFSCQYCGRRFPTQELTFDHVIPRCAGGKTNWQNVVTACIGCNHSKGRYLLHELKHMKLLRMPHEPTNGQLQARARLFPPRYLHESWRDYVYWSQSMKVE 275          
BLAST of Gvermi12324.t1 vs. uniprot
Match: A0A5J4Z0M3_PORPP (HNHc domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z0M3_PORPP)

HSP 1 Score: 253 bits (647), Expect = 5.450e-80
Identity = 123/216 (56.94%), Postives = 157/216 (72.69%), Query Frame = 0
Query:   65 KKGGGDD----DRSVRHAS-------ELRPESCPALVLNADFSPLSYMPLSLWPWQEVVKAVFLDRVTVVETYD-VGVRSPSMELALPSVVSLKEYKQVAKRAPAFSRFNVFLRDVFSCQYCGRRFETQELTFDHVIPRCKGGKTNWHNVVTACVKCNHRKGRYLLAELKDMRLKREPRRPSNFELQTNAKKFPPRNLHDSWRDYVYWSHSMHLDD 268
            ++G GD+    D S R  +        +R ESCPALVLNAD+ PLSY+PLSLWPW EV+KA+ LDRV VVETYD + VRS S E  +PSVV +KEY +++K+ PAFSR+NVFLRD FSCQYCG+     +LTFDHV+P+ +GGK  W NVVTAC+ CN+RKG  LL +L+ MRL+R P+ PS +ELQ  A++FPP+ LH+SW DY+YW   M   D
Sbjct:  100 REGDGDELRAFDESTRGGNVSGSENLAMRLESCPALVLNADYQPLSYLPLSLWPWTEVMKALCLDRVRVVETYDHIKVRSASAEFPVPSVVVMKEYAKISKKRPAFSRYNVFLRDQFSCQYCGQSHRPVDLTFDHVVPKSRGGKLCWENVVTACISCNNRKGSMLLKDLRGMRLQRTPKVPSLYELQQCARRFPPKYLHESWVDYLYWDQEMEESD 315          
BLAST of Gvermi12324.t1 vs. uniprot
Match: UPI001B298D4B (HNH endonuclease n=1 Tax=Rhodospirillales bacterium TMPK1 TaxID=2812848 RepID=UPI001B298D4B)

HSP 1 Score: 242 bits (617), Expect = 1.990e-77
Identity = 119/194 (61.34%), Postives = 142/194 (73.20%), Query Frame = 0
Query:   71 DDRSVRHASELRPESCPALVLNADFSPLSYMPLSLWPWQEVVKAVFLDRVTVVETYDVGVRSPSMELALPSVVSLKEYKQVAKRAPAFSRFNVFLRDVFSCQYCGRRFETQELTFDHVIPRCKGGKTNWHNVVTACVKCNHRKGRYLLAELKDMRLKREPRRPSNFELQTNAKKFPPRNLHDSWRDYVYWSHSM 264
            +D  +R +  L  +SCPALVLNADF PLSY PLSLW WQ+ VKAVFLDRV ++  YD  VRSP+ E+ LPSV+SLKEY Q  +R PAF+RFNVFLRD F+CQYCG  F T ELTFDHVIPR +GG+T W NV+TAC  CN RKG  L  E   M  + EP +PS FELQ N ++FPP  LH+SWRDY+YW   +
Sbjct:    8 EDEVLRLSPPL--DSCPALVLNADFRPLSYFPLSLWSWQDTVKAVFLDRVNILSHYDQTVRSPNFEMRLPSVISLKEYVQATRR-PAFTRFNVFLRDSFTCQYCGTGFPTHELTFDHVIPRSRGGRTTWDNVLTACSACNLRKGDKLCREC-GMHPRLEPFQPSAFELQENGRQFPPNFLHESWRDYLYWDSEL 197          
BLAST of Gvermi12324.t1 vs. uniprot
Match: Q0BU93_GRABC (HNH endonuclease family protein n=2 Tax=Granulibacter bethesdensis TaxID=364410 RepID=Q0BU93_GRABC)

HSP 1 Score: 241 bits (614), Expect = 5.320e-77
Identity = 116/182 (63.74%), Postives = 135/182 (74.18%), Query Frame = 0
Query:   83 PESCPALVLNADFSPLSYMPLSLWPWQEVVKAVFLDRVTVVETYDVGVRSPSMELALPSVVSLKEYKQVAKRAPAFSRFNVFLRDVFSCQYCGRRFETQELTFDHVIPRCKGGKTNWHNVVTACVKCNHRKGRYLLAELKDMRLKREPRRPSNFELQTNAKKFPPRNLHDSWRDYVYWSHSM 264
            P   PALVLNADF PLSY PLSLW WQ+ VKAVFLDRV+V+  YD  VRSPS  L LPSV++LK+Y   A+R PAF+RFNVFLRD FSCQYCG+R  T ELTFDHVIPRC+GG+T W NV+TAC  CN RKG  L  E   + L   PR+PS +ELQ N + FPP  LH+SWRDY+YW   +
Sbjct:   16 PAQFPALVLNADFRPLSYFPLSLWSWQDAVKAVFLDRVSVLSEYDHEVRSPSRTLRLPSVIALKDYVPTARR-PAFTRFNVFLRDAFSCQYCGQRMPTPELTFDHVIPRCRGGRTTWENVITACGSCNLRKGSRLPRECNMLPLT-TPRQPSTWELQDNGRAFPPNYLHESWRDYLYWDSEL 195          
BLAST of Gvermi12324.t1 vs. uniprot
Match: A0A848Z8Z1_9PROT (HNH endonuclease n=1 Tax=Inquilinus sp. TaxID=1932117 RepID=A0A848Z8Z1_9PROT)

HSP 1 Score: 240 bits (613), Expect = 5.400e-77
Identity = 114/182 (62.64%), Postives = 135/182 (74.18%), Query Frame = 0
Query:   83 PESCPALVLNADFSPLSYMPLSLWPWQEVVKAVFLDRVTVVETYDVGVRSPSMELALPSVVSLKEYKQVAKRAPAFSRFNVFLRDVFSCQYCGRRFETQELTFDHVIPRCKGGKTNWHNVVTACVKCNHRKGRYLLAELKDMRLKREPRRPSNFELQTNAKKFPPRNLHDSWRDYVYWSHSM 264
            P+ CPALVLNADF PLSY PLSLWPWQ+ VKAVFLDRV +V  YD  VRSPS E++LPSV+SLKEY    +R PAF+RFNVFLRD FSCQYCG R+ T ELTFDHV+PR +GG+T+W NVVTAC  CN RKG  +        L   P +P+ FELQ N + FPP  LH+SWRD++YW   +
Sbjct:    5 PDGCPALVLNADFRPLSYFPLSLWPWQDAVKAVFLDRVNIVAEYDRVVRSPSFEMSLPSVISLKEYVAACRR-PAFTRFNVFLRDRFSCQYCGDRYPTPELTFDHVVPRSRGGRTSWENVVTACSTCNLRKGNRMPQTCGITPLN-APAQPTTFELQANGRAFPPNFLHESWRDFLYWDSEL 184          
BLAST of Gvermi12324.t1 vs. uniprot
Match: A0A2D9YB74_9PROT (HNH endonuclease n=3 Tax=Rhodospirillaceae TaxID=41295 RepID=A0A2D9YB74_9PROT)

HSP 1 Score: 240 bits (612), Expect = 7.660e-77
Identity = 112/185 (60.54%), Postives = 142/185 (76.76%), Query Frame = 0
Query:   84 ESCPALVLNADFSPLSYMPLSLWPWQEVVKAVFLDRVTVVETYDVGVRSPSMELALPSVVSLKEYKQVAKRAPAFSRFNVFLRDVFSCQYCGRRFETQELTFDHVIPRCKGGKTNWHNVVTACVKCNHRKGRYLLAELKDMRLKREPRRPSNFELQTNAKKFPPRNLHDSWRDYVYWSHSMHLDD 268
            E+ P LVLNAD+ PLSY PLSLW WQ+ VKAVFL+RV V+  Y+  +RSPS E+ LPSV++LKE+   ++R PAF+RFNVFLRD FSCQYCG++F TQELTFDH++PR +GG TNW NVVTAC +CN RKG +L   +K M  K +PR PSN+ELQ N + FPP +LH+SWRD++YW   +   D
Sbjct:    5 ENSPVLVLNADYRPLSYFPLSLWSWQDTVKAVFLNRVNVLSEYEHKIRSPSFEMRLPSVIALKEFVLQSRR-PAFTRFNVFLRDRFSCQYCGKKFPTQELTFDHLVPRSRGGTTNWKNVVTACSRCNLRKGNHLPESVK-MYPKNKPRVPSNYELQENGRAFPPNHLHESWRDFLYWDSELEEGD 187          
BLAST of Gvermi12324.t1 vs. uniprot
Match: A0A1X6NWL2_PORUM (HNHc domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NWL2_PORUM)

HSP 1 Score: 247 bits (631), Expect = 2.120e-76
Identity = 126/238 (52.94%), Postives = 157/238 (65.97%), Query Frame = 0
Query:   54 KWTRVRTRHGVKKGGGDDDRS--------------------VRH--------ASELRPESCPALVLNADFSPLSYMPLSLWPWQEVVKAVFLDRVTVVETY-DVGVRSPSMELALPSVVSLKEYKQVAKRAPAFSRFNVFLRDVFSCQYCGRRFETQELTFDHVIPRCKGG-KTNWHNVVTACVKCNHRKGRYLLAELK-DMRLKREPRRPSNFELQTNAKKFPPRNLHDSWRDYVYW 260
            KW RV    G + GGG   RS                      H        AS L P+SCPALVLNAD+ PLSY+PLSLWPWQEV+KAV+ DRV VV  Y +  VRSP     LPSV++L+EY+ +A   PAF+RFNVFLRD F+CQYC +RF   +LTFDHV+PRC+GG KT W N+V ACV CNHRKG   LA+L  +M+L+R+P  P+N +LQ  A++FPPR  H++WRDY+YW
Sbjct:  192 KWDRVSVTLGGRAGGGRRGRSSLKAKAAVQAVATPLVAERGAEHSTELVFSGASNLAPDSCPALVLNADYQPLSYLPLSLWPWQEVIKAVYQDRVQVVAVYPNASVRSPGRRFELPSVIALREYRPIAGGKPAFTRFNVFLRDDFTCQYCDKRFPVPDLTFDHVMPRCQGGAKTCWTNIVAACVSCNHRKGGRTLAQLSGEMKLRRKPVEPTNAQLQVVARRFPPRWCHETWRDYLYW 429          
BLAST of Gvermi12324.t1 vs. uniprot
Match: A0A5J6N3Q9_9PROT (HNH endonuclease n=2 Tax=Hypericibacter TaxID=2705399 RepID=A0A5J6N3Q9_9PROT)

HSP 1 Score: 239 bits (609), Expect = 2.180e-76
Identity = 116/182 (63.74%), Postives = 135/182 (74.18%), Query Frame = 0
Query:   83 PESCPALVLNADFSPLSYMPLSLWPWQEVVKAVFLDRVTVVETYDVGVRSPSMELALPSVVSLKEYKQVAKRAPAFSRFNVFLRDVFSCQYCGRRFETQELTFDHVIPRCKGGKTNWHNVVTACVKCNHRKGRYLLAELKDMRLKREPRRPSNFELQTNAKKFPPRNLHDSWRDYVYWSHSM 264
            PESCPALVLNADF PLSY PLSLWPWQEVVKAVFLDRV ++  YD  VRSPS E+ LPSV+SLKE+  +A+R PAF+RFNVFLRD FSCQYCG      +LTFDHVIPR +GG+T W NVVTAC  CN  KG  L ++  DM     P +P+ FELQ N + FPP  LH SWRD++YW   +
Sbjct:    5 PESCPALVLNADFRPLSYFPLSLWPWQEVVKAVFLDRVNIISEYDQVVRSPSFEMRLPSVISLKEFIPLARR-PAFTRFNVFLRDRFSCQYCGEHQPAHDLTFDHVIPRSRGGRTTWDNVVTACQCCNLLKGNRLPSQA-DMFPVTRPYQPTTFELQENGRAFPPNYLHHSWRDFLYWDSEL 184          
BLAST of Gvermi12324.t1 vs. uniprot
Match: A0A858R3R6_9PROT (HNH endonuclease n=2 Tax=Rhodospirillales TaxID=204441 RepID=A0A858R3R6_9PROT)

HSP 1 Score: 239 bits (610), Expect = 3.780e-76
Identity = 115/177 (64.97%), Postives = 135/177 (76.27%), Query Frame = 0
Query:   84 ESCPALVLNADFSPLSYMPLSLWPWQEVVKAVFLDRVTVVETYDVGVRSPSMELALPSVVSLKEYKQVAKRAPAFSRFNVFLRDVFSCQYCGRRFETQELTFDHVIPRCKGGKTNWHNVVTACVKCNHRKGRYLLAELKDMRLKREPRRPSNFELQTNAKKFPPRNLHDSWRDYVYW 260
            ESCPALVLNADF PLSY PLSLW WQE VKAVFLDRV ++  YD  VRSP+ E+ LPSV+SLKEY   A R PAF+RFNVFLRD F+CQYCGR F TQELTFDHVIPRC+GG+T+W NVVT+C  CN  KG  L  +   M   + P +P+ +ELQ N + FPP  LH+SWRD++YW
Sbjct:   33 ESCPALVLNADFRPLSYFPLSLWSWQEAVKAVFLDRVNIISVYDRTVRSPNAEIRLPSVISLKEYIP-ATRKPAFTRFNVFLRDSFTCQYCGRSFPTQELTFDHVIPRCRGGRTSWENVVTSCSACNLLKGSRLPNQC-GMHPLQPPFQPTAYELQENGRSFPPNFLHESWRDFLYW 207          
The following BLAST results are available for this feature:
BLAST of Gvermi12324.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J082_9FLOR5.800e-12267.80HNHc domain-containing protein n=1 Tax=Gracilariop... [more]
R7QKE3_CHOCR7.200e-10668.16HNHc domain-containing protein n=1 Tax=Chondrus cr... [more]
A0A5J4Z0M3_PORPP5.450e-8056.94HNHc domain-containing protein n=1 Tax=Porphyridiu... [more]
UPI001B298D4B1.990e-7761.34HNH endonuclease n=1 Tax=Rhodospirillales bacteriu... [more]
Q0BU93_GRABC5.320e-7763.74HNH endonuclease family protein n=2 Tax=Granulibac... [more]
A0A848Z8Z1_9PROT5.400e-7762.64HNH endonuclease n=1 Tax=Inquilinus sp. TaxID=1932... [more]
A0A2D9YB74_9PROT7.660e-7760.54HNH endonuclease n=3 Tax=Rhodospirillaceae TaxID=4... [more]
A0A1X6NWL2_PORUM2.120e-7652.94HNHc domain-containing protein n=1 Tax=Porphyra um... [more]
A0A5J6N3Q9_9PROT2.180e-7663.74HNH endonuclease n=2 Tax=Hypericibacter TaxID=2705... [more]
A0A858R3R6_9PROT3.780e-7664.97HNH endonuclease n=2 Tax=Rhodospirillales TaxID=20... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003615HNH nucleaseSMARTSM00507HNH_5coord: 158..211
e-value: 1.3E-10
score: 51.2
IPR003615HNH nucleaseCDDcd00085HNHccoord: 163..214
e-value: 7.22475E-14
score: 62.8743
NoneNo IPR availableGENE3D1.10.30.50coord: 144..240
e-value: 3.8E-20
score: 73.5
NoneNo IPR availablePANTHERPTHR33877:SF2SLL1193 PROTEINcoord: 61..258
NoneNo IPR availablePANTHERPTHR33877SLL1193 PROTEINcoord: 61..258
IPR029471HNH endonuclease 5PFAMPF14279HNH_5coord: 171..223
e-value: 1.4E-17
score: 63.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4223723..4224529 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12324.t1Gvermi12324.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4223723..4224529 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12324.t1 ID=Gvermi12324.t1|Name=Gvermi12324.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=269bp
MALGVPMAFGAAQPLALPCLPQRATLRTSTAVIVARVRRKSRPVPARYTL
LAEKWTRVRTRHGVKKGGGDDDRSVRHASELRPESCPALVLNADFSPLSY
MPLSLWPWQEVVKAVFLDRVTVVETYDVGVRSPSMELALPSVVSLKEYKQ
VAKRAPAFSRFNVFLRDVFSCQYCGRRFETQELTFDHVIPRCKGGKTNWH
NVVTACVKCNHRKGRYLLAELKDMRLKREPRRPSNFELQTNAKKFPPRNL
HDSWRDYVYWSHSMHLDD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003615HNH_nuc
IPR029471HNH_5