Gvermi12288.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12288.t1
Unique NameGvermi12288.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4100856..4101740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12288Gvermi12288Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4100856..4101740 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12288.t1.stop1Gvermi12288.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4100856..4100858 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12288.t1.CDS1Gvermi12288.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4100856..4101740 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12288.t1.exon1Gvermi12288.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4100856..4101740 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12288.t1.start1Gvermi12288.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4101738..4101740 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12288.t1Gvermi12288.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4100856..4101740 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12288.t1 ID=Gvermi12288.t1|Name=Gvermi12288.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=295bp
MQPALRDIFRHECVLWGSKRLNAPVGHVMYIVQDTPKGTIVADHTMSNFY
RVLGITKSPAALLRQCKLKLPAATRITALPFRGVLVCDGLLSGHASPVIS
NKKKKVLKRRYALAKEAGSIVTGFDTQQLSNCAPQRSAHVSDATTRSRTL
ERDAESSLSCAQTERAVSGHITQQLKRLAAFEHREGLTGFHRFGYTEATN
PGHVVTIISESSIRAVFRTAHVRPMATEIVDQMVLLAERQGFVFSFVVVD
DRQLVGELNSITEQVGVLAAFYPPPSVEESTFSTMCGGRLPYVS*
back to top

spliced messenger RNA

>Gvermi12288.t1 ID=Gvermi12288.t1|Name=Gvermi12288.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=885bp|location=Sequence derived from alignment at ScGOVlb_3404:4100856..4101740- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCTGCGCTGCGGGACATCTTTCGCCATGAGTGCGTCCTCTGGGG
TTCTAAGCGGCTCAACGCCCCCGTTGGTCACGTTATGTACATCGTTCAAG
ACACCCCCAAGGGCACCATCGTTGCCGACCACACCATGAGCAACTTTTAC
CGCGTGCTTGGCATCACAAAATCCCCTGCCGCACTGTTGCGCCAGTGCAA
GCTCAAACTCCCCGCCGCAACTCGCATCACCGCCCTGCCATTCCGCGGCG
TCCTGGTGTGTGACGGGCTGCTTTCGGGGCACGCATCCCCAGTCATCAGT
AACAAGAAAAAGAAAGTGCTGAAAAGGCGCTACGCGCTTGCCAAGGAAGC
CGGCAGTATTGTCACTGGATTTGACACGCAGCAGCTGAGCAACTGTGCGC
CGCAGCGCTCTGCGCATGTGAGCGACGCCACGACGCGAAGCCGTACCCTG
GAACGGGACGCTGAAAGCTCACTCAGCTGTGCGCAAACCGAACGCGCCGT
GTCTGGCCACATCACGCAGCAGCTCAAACGTCTGGCCGCATTCGAGCACA
GAGAAGGGCTCACCGGGTTCCACCGTTTTGGCTACACCGAGGCCACCAAT
CCAGGGCACGTCGTGACGATAATTAGCGAGTCTTCGATCCGCGCTGTGTT
CCGCACCGCTCACGTAAGGCCCATGGCGACAGAAATCGTCGACCAGATGG
TGCTTCTCGCCGAGAGGCAAGGCTTTGTCTTCTCGTTCGTCGTAGTGGAT
GATCGGCAACTTGTAGGCGAGCTCAATTCCATCACCGAGCAGGTGGGCGT
TCTTGCTGCGTTTTACCCGCCGCCAAGCGTCGAGGAAAGCACGTTCAGTA
CCATGTGCGGAGGGAGGCTTCCGTACGTGTCGTAG
back to top

protein sequence of Gvermi12288.t1

>Gvermi12288.t1 ID=Gvermi12288.t1|Name=Gvermi12288.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=295bp
MQPALRDIFRHECVLWGSKRLNAPVGHVMYIVQDTPKGTIVADHTMSNFY
RVLGITKSPAALLRQCKLKLPAATRITALPFRGVLVCDGLLSGHASPVIS
NKKKKVLKRRYALAKEAGSIVTGFDTQQLSNCAPQRSAHVSDATTRSRTL
ERDAESSLSCAQTERAVSGHITQQLKRLAAFEHREGLTGFHRFGYTEATN
PGHVVTIISESSIRAVFRTAHVRPMATEIVDQMVLLAERQGFVFSFVVVD
DRQLVGELNSITEQVGVLAAFYPPPSVEESTFSTMCGGRLPYVS*
back to top

mRNA from alignment at ScGOVlb_3404:4100856..4101740-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12288.t1 ID=Gvermi12288.t1|Name=Gvermi12288.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=885bp|location=Sequence derived from alignment at ScGOVlb_3404:4100856..4101740- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCCTGCGCTGCGGGACATCTTTCGCCATGAGTGCGTCCTCTGGGG
TTCTAAGCGGCTCAACGCCCCCGTTGGTCACGTTATGTACATCGTTCAAG
ACACCCCCAAGGGCACCATCGTTGCCGACCACACCATGAGCAACTTTTAC
CGCGTGCTTGGCATCACAAAATCCCCTGCCGCACTGTTGCGCCAGTGCAA
GCTCAAACTCCCCGCCGCAACTCGCATCACCGCCCTGCCATTCCGCGGCG
TCCTGGTGTGTGACGGGCTGCTTTCGGGGCACGCATCCCCAGTCATCAGT
AACAAGAAAAAGAAAGTGCTGAAAAGGCGCTACGCGCTTGCCAAGGAAGC
CGGCAGTATTGTCACTGGATTTGACACGCAGCAGCTGAGCAACTGTGCGC
CGCAGCGCTCTGCGCATGTGAGCGACGCCACGACGCGAAGCCGTACCCTG
GAACGGGACGCTGAAAGCTCACTCAGCTGTGCGCAAACCGAACGCGCCGT
GTCTGGCCACATCACGCAGCAGCTCAAACGTCTGGCCGCATTCGAGCACA
GAGAAGGGCTCACCGGGTTCCACCGTTTTGGCTACACCGAGGCCACCAAT
CCAGGGCACGTCGTGACGATAATTAGCGAGTCTTCGATCCGCGCTGTGTT
CCGCACCGCTCACGTAAGGCCCATGGCGACAGAAATCGTCGACCAGATGG
TGCTTCTCGCCGAGAGGCAAGGCTTTGTCTTCTCGTTCGTCGTAGTGGAT
GATCGGCAACTTGTAGGCGAGCTCAATTCCATCACCGAGCAGGTGGGCGT
TCTTGCTGCGTTTTACCCGCCGCCAAGCGTCGAGGAAAGCACGTTCAGTA
CCATGTGCGGAGGGAGGCTTCCGTACGTGTCGTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:4100856..4101740-

>Gvermi12288.t1 ID=Gvermi12288.t1|Name=Gvermi12288.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=885bp|location=Sequence derived from alignment at ScGOVlb_3404:4100856..4101740- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCCTGCGCTGCGGGACATCTTTCGCCATGAGTGCGTCCTCTGGGG
TTCTAAGCGGCTCAACGCCCCCGTTGGTCACGTTATGTACATCGTTCAAG
ACACCCCCAAGGGCACCATCGTTGCCGACCACACCATGAGCAACTTTTAC
CGCGTGCTTGGCATCACAAAATCCCCTGCCGCACTGTTGCGCCAGTGCAA
GCTCAAACTCCCCGCCGCAACTCGCATCACCGCCCTGCCATTCCGCGGCG
TCCTGGTGTGTGACGGGCTGCTTTCGGGGCACGCATCCCCAGTCATCAGT
AACAAGAAAAAGAAAGTGCTGAAAAGGCGCTACGCGCTTGCCAAGGAAGC
CGGCAGTATTGTCACTGGATTTGACACGCAGCAGCTGAGCAACTGTGCGC
CGCAGCGCTCTGCGCATGTGAGCGACGCCACGACGCGAAGCCGTACCCTG
GAACGGGACGCTGAAAGCTCACTCAGCTGTGCGCAAACCGAACGCGCCGT
GTCTGGCCACATCACGCAGCAGCTCAAACGTCTGGCCGCATTCGAGCACA
GAGAAGGGCTCACCGGGTTCCACCGTTTTGGCTACACCGAGGCCACCAAT
CCAGGGCACGTCGTGACGATAATTAGCGAGTCTTCGATCCGCGCTGTGTT
CCGCACCGCTCACGTAAGGCCCATGGCGACAGAAATCGTCGACCAGATGG
TGCTTCTCGCCGAGAGGCAAGGCTTTGTCTTCTCGTTCGTCGTAGTGGAT
GATCGGCAACTTGTAGGCGAGCTCAATTCCATCACCGAGCAGGTGGGCGT
TCTTGCTGCGTTTTACCCGCCGCCAAGCGTCGAGGAAAGCACGTTCAGTA
CCATGTGCGGAGGGAGGCTTCCGTACGTGTCGTAG
back to top