Gvermi12275.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12275.t1
Unique NameGvermi12275.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length315
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4078312..4080065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705436.1
PFAMsHistone
Max annot lvl2759|Eukaryota
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
Evalue3.03e-53
EggNOG OGsKOG1744@1|root,KOG1744@2759|Eukaryota
Descriptionprotein heterodimerization activity
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12275Gvermi12275Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 4078312..4080065 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12275.t1Gvermi12275.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 4078312..4080065 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12275.t1.stop1Gvermi12275.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 4078312..4078314 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12275.t1.CDS1Gvermi12275.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4078312..4078723 -
Gvermi12275.t1.CDS2Gvermi12275.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4078798..4078960 -
Gvermi12275.t1.CDS3Gvermi12275.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 4079696..4080065 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12275.t1.exon1Gvermi12275.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4078312..4078723 -
Gvermi12275.t1.exon2Gvermi12275.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4078798..4078960 -
Gvermi12275.t1.exon3Gvermi12275.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 4079696..4080065 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12275.t1.intron1Gvermi12275.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4078724..4078797 -
Gvermi12275.t1.intron2Gvermi12275.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 4078961..4079695 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12275.t1.start1Gvermi12275.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 4080063..4080065 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12275.t1 ID=Gvermi12275.t1|Name=Gvermi12275.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=315bp
MAPKGKSVPVAEKKVAKKGMAGGTEKSTRKKKRSESYSIYIYKVLKQVHP
DTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRL
LLPGELAKHAVSEGTKAVTKYSSTGRGYDKETCSRSAAQLSTRISSGNGG
ESGMRKKTCLVCNKQQSKYKCPKCLLPFCSVSCSKAHKQNCTPPPPAKAP
ILKVVNEQVAQRQQKEENLPDDLLLLRTEQLRSLDDDKEVQRKLRDDRLL
GILQRIDSSSNRVKELENEMKDPAFLEFCDDVLVALGCKIPLDESHNLEE
TLRVRLEDLKSEDD*
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spliced messenger RNA

>Gvermi12275.t1 ID=Gvermi12275.t1|Name=Gvermi12275.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=945bp|location=Sequence derived from alignment at ScGOVlb_3404:4078312..4080065- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCCAAGGGCAAAAGCGTTCCCGTCGCCGAGAAGAAAGTGGCCAA
GAAGGGTATGGCCGGTGGCACCGAAAAGAGTACCAGGAAAAAGAAGCGTA
GTGAATCATATTCTATCTACATCTACAAGGTATTGAAGCAGGTCCACCCG
GACACAGGTATCTCTTCCAAGGCAATGAGCATCATGAACTCCTTTGTCGC
AGACCTCTTCGAGAGAATTGCTACGGAGGCTGCGAAGCTGGCATCGTACA
ACAACACGAAGACCCTCACTTCTCGCGAGATTCAGACTGCCGTTCGCCTC
CTTCTACCCGGGGAGCTGGCCAAGCATGCCGTCTCCGAAGGCACGAAGGC
CGTCACCAAGTACAGCTCGACTGGTAGAGGGTATGACAAGGAGACCTGCA
GTCGTAGCGCAGCACAGCTTTCAACTCGGATTAGCTCCGGTAACGGCGGC
GAGTCTGGGATGCGGAAGAAAACATGTCTCGTCTGTAACAAGCAACAATC
GAAGTACAAATGCCCCAAGTGTCTTCTTCCATTTTGTTCGGTTTCATGTT
CCAAAGCCCACAAGCAAAACTGCACTCCACCGCCCCCGGCCAAAGCTCCA
ATACTGAAAGTTGTCAACGAACAAGTAGCGCAACGACAACAAAAAGAAGA
AAACTTGCCAGATGATCTCCTACTTCTAAGAACAGAACAATTGCGAAGCT
TGGATGATGACAAAGAGGTACAAAGAAAACTACGGGACGACAGACTGCTG
GGAATTTTACAGCGAATTGATTCCTCATCCAACCGAGTAAAAGAACTGGA
AAACGAAATGAAGGATCCGGCCTTCTTAGAGTTTTGCGACGATGTGTTAG
TTGCTTTAGGATGCAAAATACCGCTGGATGAATCACATAATTTGGAGGAG
ACGCTTCGGGTGAGGTTAGAAGATCTAAAGTCTGAAGATGATTAG
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protein sequence of Gvermi12275.t1

>Gvermi12275.t1 ID=Gvermi12275.t1|Name=Gvermi12275.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=315bp
MAPKGKSVPVAEKKVAKKGMAGGTEKSTRKKKRSESYSIYIYKVLKQVHP
DTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRL
LLPGELAKHAVSEGTKAVTKYSSTGRGYDKETCSRSAAQLSTRISSGNGG
ESGMRKKTCLVCNKQQSKYKCPKCLLPFCSVSCSKAHKQNCTPPPPAKAP
ILKVVNEQVAQRQQKEENLPDDLLLLRTEQLRSLDDDKEVQRKLRDDRLL
GILQRIDSSSNRVKELENEMKDPAFLEFCDDVLVALGCKIPLDESHNLEE
TLRVRLEDLKSEDD*
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mRNA from alignment at ScGOVlb_3404:4078312..4080065-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12275.t1 ID=Gvermi12275.t1|Name=Gvermi12275.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1754bp|location=Sequence derived from alignment at ScGOVlb_3404:4078312..4080065- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCCCAAGGGCAAAAGCGTTCCCGTCGCCGAGAAGAAAGTGGCCAA
GAAGGGTATGGCCGGTGGCACCGAAAAGAGTACCAGGAAAAAGAAGCGTA
GTGAATCATATTCTATCTACATCTACAAGGTATTGAAGCAGGTCCACCCG
GACACAGGTATCTCTTCCAAGGCAATGAGCATCATGAACTCCTTTGTCGC
AGACCTCTTCGAGAGAATTGCTACGGAGGCTGCGAAGCTGGCATCGTACA
ACAACACGAAGACCCTCACTTCTCGCGAGATTCAGACTGCCGTTCGCCTC
CTTCTACCCGGGGAGCTGGCCAAGCATGCCGTCTCCGAAGGCACGAAGGC
CGTCACCAAGTACAGCTCGAGTTAAATCGATTTCTACGATTTTAACATAC
GTTTCATCGATGCCTACATCAAAGGTGTATTTTTACACCTCGATAGAAGA
ATCTTGTCGGCTTCATTGTGGCCACTTGTCATCTAACATTTTTTGCACGT
GCATGCGTCTTATTCCCTGCCTGTTTGCATTTCGCTTTTGTGCAATAACT
GCACCGAAATTGCACTTGAGGGCGTCAAGACGGGTTCAGGATTTTGGTCT
GTAGATTAAGTCTGCGGTTCGTGTGAAATTCGTGCTAATGACGCCAGTTC
TCTTGATTGGGTAAGGCCCAGAAAGTGCAGAGTCGATTCGACACATCCAA
AGTGCACATGGACATGTGCACACAGTCAATCGTTAGATTTTTATTCGTAG
AACGATTCAAACGTTTGTCACACGGTGAGATGCGGTGAACTGCTCAGTCG
ATGAACAACGTAACGTATTTCACAACGGACTTACCCTGGCAACCAATGTG
CCCCGATGGTTTCGCTCCGTTCCAATGAGGAAAAACCCATAGTAAAGTAG
ATCCCATATCTTGCCCATTCACGTGTACCGTGAGCAATATGCCTGCGTAC
GTTATCTGTAGAAGAAGACGCGTTAGGTTAAACCGGTGTCGAGACGCAAG
TGAGCATGATGTATGAACGCGAAAACCGGTGGAAGTACCCTTCTTAGATG
AAAGCTTGTTGAAATTCTTGTGCGCTAACGTAGTGTGCCCTACCTACCAT
TGCAGCTGGTAGAGGGTATGACAAGGAGACCTGCAGTCGTAGCGCAGCAC
AGCTTTCAACTCGGATTAGCTCCGGTAACGGCGGCGAGTCTGGGATGCGG
AAGAAAACATGTCTCGTCTGTAACAAGCAACAATCGAAGTACAAATGCCC
CAAGTGTCTTCTTCCATTGTGAGTTGACTCATTTCGCTGAAGTGTAACCA
AATCCTTTTGAGCACGTCTAACTCTTAACGTTTTTGCATCAGTTGTTCGG
TTTCATGTTCCAAAGCCCACAAGCAAAACTGCACTCCACCGCCCCCGGCC
AAAGCTCCAATACTGAAAGTTGTCAACGAACAAGTAGCGCAACGACAACA
AAAAGAAGAAAACTTGCCAGATGATCTCCTACTTCTAAGAACAGAACAAT
TGCGAAGCTTGGATGATGACAAAGAGGTACAAAGAAAACTACGGGACGAC
AGACTGCTGGGAATTTTACAGCGAATTGATTCCTCATCCAACCGAGTAAA
AGAACTGGAAAACGAAATGAAGGATCCGGCCTTCTTAGAGTTTTGCGACG
ATGTGTTAGTTGCTTTAGGATGCAAAATACCGCTGGATGAATCACATAAT
TTGGAGGAGACGCTTCGGGTGAGGTTAGAAGATCTAAAGTCTGAAGATGA
TTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:4078312..4080065-

>Gvermi12275.t1 ID=Gvermi12275.t1|Name=Gvermi12275.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=945bp|location=Sequence derived from alignment at ScGOVlb_3404:4078312..4080065- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCCCAAGGGCAAAAGCGTTCCCGTCGCCGAGAAGAAAGTGGCCAA
GAAGGGTATGGCCGGTGGCACCGAAAAGAGTACCAGGAAAAAGAAGCGTA
GTGAATCATATTCTATCTACATCTACAAGGTATTGAAGCAGGTCCACCCG
GACACAGGTATCTCTTCCAAGGCAATGAGCATCATGAACTCCTTTGTCGC
AGACCTCTTCGAGAGAATTGCTACGGAGGCTGCGAAGCTGGCATCGTACA
ACAACACGAAGACCCTCACTTCTCGCGAGATTCAGACTGCCGTTCGCCTC
CTTCTACCCGGGGAGCTGGCCAAGCATGCCGTCTCCGAAGGCACGAAGGC
CGTCACCAAGTACAGCTCGACTGGTAGAGGGTATGACAAGGAGACCTGCA
GTCGTAGCGCAGCACAGCTTTCAACTCGGATTAGCTCCGGTAACGGCGGC
GAGTCTGGGATGCGGAAGAAAACATGTCTCGTCTGTAACAAGCAACAATC
GAAGTACAAATGCCCCAAGTGTCTTCTTCCATTTTGTTCGGTTTCATGTT
CCAAAGCCCACAAGCAAAACTGCACTCCACCGCCCCCGGCCAAAGCTCCA
ATACTGAAAGTTGTCAACGAACAAGTAGCGCAACGACAACAAAAAGAAGA
AAACTTGCCAGATGATCTCCTACTTCTAAGAACAGAACAATTGCGAAGCT
TGGATGATGACAAAGAGGTACAAAGAAAACTACGGGACGACAGACTGCTG
GGAATTTTACAGCGAATTGATTCCTCATCCAACCGAGTAAAAGAACTGGA
AAACGAAATGAAGGATCCGGCCTTCTTAGAGTTTTGCGACGATGTGTTAG
TTGCTTTAGGATGCAAAATACCGCTGGATGAATCACATAATTTGGAGGAG
ACGCTTCGGGTGAGGTTAGAAGATCTAAAGTCTGAAGATGATTAG
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