Gvermi12275.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12275.t1
Unique NameGvermi12275.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length315
Homology
BLAST of Gvermi12275.t1 vs. uniprot
Match: A0A2V3J066_9FLOR (Histone H2B n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J066_9FLOR)

HSP 1 Score: 212 bits (539), Expect = 5.200e-66
Identity = 113/124 (91.13%), Postives = 120/124 (96.77%), Query Frame = 0
Query:    1 MAPKGKSVPVAEKKVAKKGMAGGTEKSTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSST 124
            M  KGKSVPVAEKKVAKKG++ G EKS+RKKKR+ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKL+SYN+TKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSS+
Sbjct:    1 MVQKGKSVPVAEKKVAKKGISAGPEKSSRKKKRNESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLSSYNHTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 124          
BLAST of Gvermi12275.t1 vs. uniprot
Match: Q7XY84_GRIJA (Histone H2B n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY84_GRIJA)

HSP 1 Score: 211 bits (537), Expect = 1.040e-65
Identity = 112/124 (90.32%), Postives = 119/124 (95.97%), Query Frame = 0
Query:    1 MAPKGKSVPVAEKKVAKKGMAGGTEKSTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSST 124
            MAPKGKSVP+AEKKVAKK + G TEK T+KKKRSESYSIYIYKVLKQVHP+TGISSKAMSIMNSFV DLFERIATEAAKLA+YNN+KTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSS+
Sbjct:    1 MAPKGKSVPIAEKKVAKKAVPGATEKVTKKKKRSESYSIYIYKVLKQVHPETGISSKAMSIMNSFVDDLFERIATEAAKLATYNNSKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 124          
BLAST of Gvermi12275.t1 vs. uniprot
Match: R7QDD7_CHOCR (Histone H2B n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QDD7_CHOCR)

HSP 1 Score: 205 bits (521), Expect = 2.920e-63
Identity = 111/126 (88.10%), Postives = 121/126 (96.03%), Query Frame = 0
Query:    1 MAPKG-KSVPVAEKKVAKKGMAGGT-EKSTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSST 124
            MAPKG K VP AEKK+AKKG++GG  EK+T++KKR+ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIA+E+AKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSS+
Sbjct:    1 MAPKGNKGVPTAEKKIAKKGVSGGAVEKTTKRKKRNESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIASESAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 126          
BLAST of Gvermi12275.t1 vs. uniprot
Match: A0A2V3J0F2_9FLOR (HIT-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0F2_9FLOR)

HSP 1 Score: 189 bits (481), Expect = 1.020e-56
Identity = 103/162 (63.58%), Postives = 128/162 (79.01%), Query Frame = 0
Query:  154 MRKKTCLVCNKQQSKYKCPKCLLPFCSVSCSKAHKQN-CTP-PPPAKAPILKVVNEQVAQRQQKEENLPDDLLLLRTEQLRSLDDDKEVQRKLRDDRLLGILQRIDSSSNRVKELENEMKDPAFLEFCDDVLVALGCKIPLDESHNLEETLRVRLEDLKSED 313
            M K TC VC++QQ+KYKCPKC +PFCSVSC KAHK+  C   P P+KAP L++V+E+V Q+QQ+ E LP+DLLLL+ EQL  LD+ KEVQRKL+DDRLL +LQRI SS+NR+KELE EM+DPAFLEFCDDVL A+GCK+  D    LEE +R +L+   SED
Sbjct:    1 MAKNTCHVCHEQQAKYKCPKCRIPFCSVSCCKAHKERRCEAVPTPSKAP-LQIVSEKVTQKQQEAECLPEDLLLLKREQLEGLDNHKEVQRKLKDDRLLTVLQRIGSSANRIKELEREMQDPAFLEFCDDVLEAVGCKVSPDIPVTLEEIIRSKLKSSSSED 161          
BLAST of Gvermi12275.t1 vs. uniprot
Match: M2VZY7_GALSU (Histone H2B n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VZY7_GALSU)

HSP 1 Score: 178 bits (452), Expect = 6.200e-53
Identity = 101/125 (80.80%), Postives = 109/125 (87.20%), Query Frame = 0
Query:    1 MAPKG-KSVPVAEKKVAKKGMAGGTEKSTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSST 124
            MAPKG KSVPVA KK       G  EK   KKKR+ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFV D+FERIA+E++KLA+Y+ TKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKY+ST
Sbjct:    1 MAPKGSKSVPVAGKKPI-----GKAEKRKSKKKRAESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIASESSKLAAYSKTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTST 120          
BLAST of Gvermi12275.t1 vs. uniprot
Match: A0A7S0XIQ2_9RHOD (Histone H2B n=2 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0XIQ2_9RHOD)

HSP 1 Score: 175 bits (444), Expect = 3.230e-51
Identity = 99/126 (78.57%), Postives = 106/126 (84.13%), Query Frame = 0
Query:    1 MAPKG-KSVPVAEKKVAKKGMAGG-TEKSTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSST 124
            MAPKG KS+P A          GG  +K +RKKKR ESYSIY+YKVLKQVHP+TGISSKAMSIMNSFV DLFERIA E+AKLA Y+ TKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSST
Sbjct:   32 MAPKGSKSLPAAXXXXXXXXXXGGDADKKSRKKKRVESYSIYVYKVLKQVHPETGISSKAMSIMNSFVNDLFERIAAESAKLAQYSKTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSST 157          
BLAST of Gvermi12275.t1 vs. uniprot
Match: M2XSM4_GALSU (Histone H2B n=3 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XSM4_GALSU)

HSP 1 Score: 171 bits (433), Expect = 4.490e-50
Identity = 96/125 (76.80%), Postives = 108/125 (86.40%), Query Frame = 0
Query:    1 MAPKG-KSVPVAEKKVAKKGMAGGTEKSTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSST 124
            MAPKG KSVPVA KK   K      ++   KKKRSE+YSIYIYKVLKQVHPDTGIS KAMSIMNSFV D+FERIA+EA+KL++Y+ +KTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKY+S+
Sbjct:    1 MAPKGAKSVPVAGKKPIPK-----VDRKKSKKKRSETYSIYIYKVLKQVHPDTGISGKAMSIMNSFVNDIFERIASEASKLSAYSKSKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 120          
BLAST of Gvermi12275.t1 vs. uniprot
Match: A0A5J4Z3W2_PORPP (Histone H2B n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3W2_PORPP)

HSP 1 Score: 169 bits (429), Expect = 2.040e-49
Identity = 98/125 (78.40%), Postives = 105/125 (84.00%), Query Frame = 0
Query:    1 MAPKG-KSVPVAEKKVAKKGMAGGTEKSTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSST 124
            MAPKG KS+PVAEKK  K+ +            R+ESYSIYIYKVLKQVHPDTGISS AMSIMNSFV DLFERIA EAAKL+SY+ TKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSS+
Sbjct:    1 MAPKGTKSLPVAEKK-PKQVIKXXXXXXXXXXXRTESYSIYIYKVLKQVHPDTGISSNAMSIMNSFVTDLFERIAAEAAKLSSYSKTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSS 124          
BLAST of Gvermi12275.t1 vs. uniprot
Match: M1V980_CYAM1 (Histone H2B n=2 Tax=Cyanidiaceae TaxID=265316 RepID=M1V980_CYAM1)

HSP 1 Score: 167 bits (422), Expect = 1.900e-48
Identity = 94/124 (75.81%), Postives = 102/124 (82.26%), Query Frame = 0
Query:    1 MAPKGKSVPVAEKKVAKKGMAGGTEKSTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSST 124
            MA KGK+V       AKK          +K+KR E+YSIYIYKVLKQVHPDTGISSKAMSIMNSFV DLFERIA+EA+KLA YN TKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKY+S+
Sbjct:    1 MAMKGKTV-------AKKVAKAPASIDKKKRKRLETYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDLFERIASEASKLAQYNKTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 117          
BLAST of Gvermi12275.t1 vs. uniprot
Match: UPI001455B3F0 (late histone H2B.L4-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455B3F0)

HSP 1 Score: 167 bits (422), Expect = 2.870e-48
Identity = 90/125 (72.00%), Postives = 102/125 (81.60%), Query Frame = 0
Query:    6 KSVPVAEKKVAK----KGMAGGTEKSTRKKKRSESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRLLLPGELAKHAVSEGTKAVTKYSSTGR 126
            +SVP  EKK  K        GG +K  RKKKR ESY+IYIYKVLKQVHPDTGISS+A+SIMNSFV D+FERIA EA++LA YN   T+TSRE+QTAVRLLLPGELAKHAVSEGTKAVTKY++T R
Sbjct:    7 RSVPGGEKKAIKAKAPSATMGGDKKMKRKKKRKESYNIYIYKVLKQVHPDTGISSRAISIMNSFVNDVFERIAGEASRLAHYNKRSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTTSR 131          
The following BLAST results are available for this feature:
BLAST of Gvermi12275.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J066_9FLOR5.200e-6691.13Histone H2B n=2 Tax=Gracilariopsis chorda TaxID=44... [more]
Q7XY84_GRIJA1.040e-6590.32Histone H2B n=1 Tax=Griffithsia japonica TaxID=832... [more]
R7QDD7_CHOCR2.920e-6388.10Histone H2B n=2 Tax=Chondrus crispus TaxID=2769 Re... [more]
A0A2V3J0F2_9FLOR1.020e-5663.58HIT-type domain-containing protein n=1 Tax=Gracila... [more]
M2VZY7_GALSU6.200e-5380.80Histone H2B n=1 Tax=Galdieria sulphuraria TaxID=13... [more]
A0A7S0XIQ2_9RHOD3.230e-5178.57Histone H2B n=2 Tax=Erythrolobus madagascarensis T... [more]
M2XSM4_GALSU4.490e-5076.80Histone H2B n=3 Tax=Galdieria sulphuraria TaxID=13... [more]
A0A5J4Z3W2_PORPP2.040e-4978.40Histone H2B n=1 Tax=Porphyridium purpureum TaxID=3... [more]
M1V980_CYAM11.900e-4875.81Histone H2B n=2 Tax=Cyanidiaceae TaxID=265316 RepI... [more]
UPI001455B3F02.870e-4872.00late histone H2B.L4-like n=1 Tax=Asterias rubens T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 292..312
NoneNo IPR availableCOILSCoilCoilcoord: 249..269
NoneNo IPR availableGENE3D3.30.60.190coord: 145..195
e-value: 7.5E-12
score: 46.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..30
NoneNo IPR availablePANTHERPTHR23428:SF252HISTONE H2Bcoord: 1..123
NoneNo IPR availableSUPERFAMILY144232HIT/MYND zinc finger-likecoord: 154..192
IPR000558Histone H2BPRINTSPR00621HISTONEH2Bcoord: 78..95
score: 58.47
coord: 56..76
score: 77.41
coord: 108..121
score: 95.85
coord: 37..55
score: 87.67
coord: 95..108
score: 94.9
IPR000558Histone H2BSMARTSM00427h2b3coord: 27..123
e-value: 9.8E-68
score: 241.0
IPR000558Histone H2BPANTHERPTHR23428HISTONE H2Bcoord: 1..123
IPR000558Histone H2BPROSITEPS00357HISTONE_H2Bcoord: 92..114
IPR007529Zinc finger, HIT-typePFAMPF04438zf-HITcoord: 156..185
e-value: 2.9E-7
score: 30.2
IPR007529Zinc finger, HIT-typePROSITEPS51083ZF_HITcoord: 159..191
score: 10.545033
IPR007125Histone H2A/H2B/H3PFAMPF00125Histonecoord: 11..100
e-value: 1.1E-19
score: 71.1
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 2..124
e-value: 4.1E-57
score: 193.6
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 16..123

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:4078312..4080065 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12275.t1Gvermi12275.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 4078312..4080065 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12275.t1 ID=Gvermi12275.t1|Name=Gvermi12275.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=315bp
MAPKGKSVPVAEKKVAKKGMAGGTEKSTRKKKRSESYSIYIYKVLKQVHP
DTGISSKAMSIMNSFVADLFERIATEAAKLASYNNTKTLTSREIQTAVRL
LLPGELAKHAVSEGTKAVTKYSSTGRGYDKETCSRSAAQLSTRISSGNGG
ESGMRKKTCLVCNKQQSKYKCPKCLLPFCSVSCSKAHKQNCTPPPPAKAP
ILKVVNEQVAQRQQKEENLPDDLLLLRTEQLRSLDDDKEVQRKLRDDRLL
GILQRIDSSSNRVKELENEMKDPAFLEFCDDVLVALGCKIPLDESHNLEE
TLRVRLEDLKSEDD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000558Histone_H2B
IPR007529Znf_HIT
IPR007125Histone_H2A/H2B/H3
IPR009072Histone-fold