Gvermi12223.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12223.t1
Unique NameGvermi12223.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length368
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3899370..3900473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002948783.1
PFAMsRRM_1
Max annot lvl3041|Chlorophyta
KEGG koko:K14838
Evalue2.16e-40
EggNOG OGsKOG4208@1|root,KOG4208@2759|Eukaryota,37RHZ@33090|Viridiplantae,34M16@3041|Chlorophyta
DescriptionRNA recognition motif
COG categoryA
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12223Gvermi12223Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3899370..3900473 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12223.t1.stop1Gvermi12223.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3899370..3899372 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12223.t1.CDS1Gvermi12223.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3899370..3900473 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12223.t1.exon1Gvermi12223.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3899370..3900473 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12223.t1.start1Gvermi12223.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3900471..3900473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12223.t1Gvermi12223.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3899370..3900473 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12223.t1 ID=Gvermi12223.t1|Name=Gvermi12223.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=368bp
MSSPSTTPRARSISKKSPRIRQSSSAQRLAPRTNASANPLKEKPAVHLAK
SADPKPVKNNAGRSAATAAASPQVVINKDITESKLKLLQQSPLRRLIPEA
DRKAAAAQLQAKRRQKSKSPQKPAHPESSNEAAQSKPPKAHMAKTRAQQP
VSEHEHSDPENVHNEGASLTKTEARQNLDDLKLGVAKKKEARKMRWKARQ
LRKDGKLVKPDKDVDPGVLYLGHIPHGFYEKEMRSYFSQFGEVLRVRLSR
SVKTGRSRGYAFIEFAHKDVAQIAADAMDGYLMHRQKLVARFVPPEKVHE
KTFKGANRTFRQIPWARIERRNMLNRASDPLKLAARSKRILKSAKRKRAS
LVRQGLTHTFLELPSRS*
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spliced messenger RNA

>Gvermi12223.t1 ID=Gvermi12223.t1|Name=Gvermi12223.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1104bp|location=Sequence derived from alignment at ScGOVlb_3404:3899370..3900473- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCACCGAGCACCACCCCCCGCGCGAGGTCCATCAGCAAAAAATC
CCCCCGCATCCGCCAGTCCTCTTCCGCCCAACGCCTGGCTCCGCGCACCA
ACGCTTCCGCCAACCCGTTGAAAGAAAAGCCAGCAGTGCATCTAGCAAAG
AGCGCCGACCCCAAACCGGTCAAAAACAACGCGGGTCGCAGCGCTGCCAC
CGCGGCTGCCAGCCCGCAAGTCGTCATCAACAAGGACATCACCGAGTCCA
AGCTCAAGCTTTTGCAACAGTCCCCCCTCCGAAGGCTCATCCCCGAAGCT
GATCGGAAAGCGGCAGCCGCTCAGCTGCAAGCCAAACGCAGGCAGAAAAG
CAAGTCGCCCCAAAAGCCTGCTCATCCAGAAAGCTCAAACGAAGCTGCAC
AATCTAAACCGCCCAAGGCGCACATGGCTAAAACACGTGCTCAGCAACCC
GTTTCTGAGCACGAGCATAGTGATCCCGAAAACGTCCACAACGAAGGCGC
CTCGTTGACGAAGACCGAGGCCCGCCAAAACCTCGACGATCTCAAATTGG
GTGTCGCGAAGAAAAAAGAAGCCCGTAAGATGAGGTGGAAAGCTCGCCAA
CTTCGAAAAGACGGAAAGCTTGTCAAACCCGACAAGGACGTTGACCCTGG
AGTACTGTACTTGGGTCACATTCCGCACGGCTTTTATGAGAAGGAAATGA
GGAGTTATTTCTCTCAGTTCGGTGAAGTGCTGCGCGTTCGCCTCAGTCGA
TCTGTGAAAACTGGTCGCTCGAGAGGATACGCGTTCATCGAATTTGCTCA
CAAGGATGTCGCTCAAATCGCTGCCGACGCCATGGACGGCTACCTCATGC
ACAGACAGAAACTAGTCGCCCGGTTTGTGCCGCCGGAAAAGGTTCATGAG
AAAACGTTCAAGGGTGCCAATCGGACCTTCAGACAAATTCCGTGGGCTCG
TATTGAAAGAAGAAACATGCTGAATCGAGCAAGTGACCCTCTCAAGCTTG
CTGCTCGCTCAAAGAGGATTCTCAAATCCGCCAAGAGAAAGCGCGCCAGC
TTAGTGAGACAAGGACTGACTCACACGTTTCTGGAACTGCCAAGCCGAAG
TTGA
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protein sequence of Gvermi12223.t1

>Gvermi12223.t1 ID=Gvermi12223.t1|Name=Gvermi12223.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=368bp
MSSPSTTPRARSISKKSPRIRQSSSAQRLAPRTNASANPLKEKPAVHLAK
SADPKPVKNNAGRSAATAAASPQVVINKDITESKLKLLQQSPLRRLIPEA
DRKAAAAQLQAKRRQKSKSPQKPAHPESSNEAAQSKPPKAHMAKTRAQQP
VSEHEHSDPENVHNEGASLTKTEARQNLDDLKLGVAKKKEARKMRWKARQ
LRKDGKLVKPDKDVDPGVLYLGHIPHGFYEKEMRSYFSQFGEVLRVRLSR
SVKTGRSRGYAFIEFAHKDVAQIAADAMDGYLMHRQKLVARFVPPEKVHE
KTFKGANRTFRQIPWARIERRNMLNRASDPLKLAARSKRILKSAKRKRAS
LVRQGLTHTFLELPSRS*
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mRNA from alignment at ScGOVlb_3404:3899370..3900473-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12223.t1 ID=Gvermi12223.t1|Name=Gvermi12223.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1104bp|location=Sequence derived from alignment at ScGOVlb_3404:3899370..3900473- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTTCACCGAGCACCACCCCCCGCGCGAGGTCCATCAGCAAAAAATC
CCCCCGCATCCGCCAGTCCTCTTCCGCCCAACGCCTGGCTCCGCGCACCA
ACGCTTCCGCCAACCCGTTGAAAGAAAAGCCAGCAGTGCATCTAGCAAAG
AGCGCCGACCCCAAACCGGTCAAAAACAACGCGGGTCGCAGCGCTGCCAC
CGCGGCTGCCAGCCCGCAAGTCGTCATCAACAAGGACATCACCGAGTCCA
AGCTCAAGCTTTTGCAACAGTCCCCCCTCCGAAGGCTCATCCCCGAAGCT
GATCGGAAAGCGGCAGCCGCTCAGCTGCAAGCCAAACGCAGGCAGAAAAG
CAAGTCGCCCCAAAAGCCTGCTCATCCAGAAAGCTCAAACGAAGCTGCAC
AATCTAAACCGCCCAAGGCGCACATGGCTAAAACACGTGCTCAGCAACCC
GTTTCTGAGCACGAGCATAGTGATCCCGAAAACGTCCACAACGAAGGCGC
CTCGTTGACGAAGACCGAGGCCCGCCAAAACCTCGACGATCTCAAATTGG
GTGTCGCGAAGAAAAAAGAAGCCCGTAAGATGAGGTGGAAAGCTCGCCAA
CTTCGAAAAGACGGAAAGCTTGTCAAACCCGACAAGGACGTTGACCCTGG
AGTACTGTACTTGGGTCACATTCCGCACGGCTTTTATGAGAAGGAAATGA
GGAGTTATTTCTCTCAGTTCGGTGAAGTGCTGCGCGTTCGCCTCAGTCGA
TCTGTGAAAACTGGTCGCTCGAGAGGATACGCGTTCATCGAATTTGCTCA
CAAGGATGTCGCTCAAATCGCTGCCGACGCCATGGACGGCTACCTCATGC
ACAGACAGAAACTAGTCGCCCGGTTTGTGCCGCCGGAAAAGGTTCATGAG
AAAACGTTCAAGGGTGCCAATCGGACCTTCAGACAAATTCCGTGGGCTCG
TATTGAAAGAAGAAACATGCTGAATCGAGCAAGTGACCCTCTCAAGCTTG
CTGCTCGCTCAAAGAGGATTCTCAAATCCGCCAAGAGAAAGCGCGCCAGC
TTAGTGAGACAAGGACTGACTCACACGTTTCTGGAACTGCCAAGCCGAAG
TTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3899370..3900473-

>Gvermi12223.t1 ID=Gvermi12223.t1|Name=Gvermi12223.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1104bp|location=Sequence derived from alignment at ScGOVlb_3404:3899370..3900473- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTTCACCGAGCACCACCCCCCGCGCGAGGTCCATCAGCAAAAAATC
CCCCCGCATCCGCCAGTCCTCTTCCGCCCAACGCCTGGCTCCGCGCACCA
ACGCTTCCGCCAACCCGTTGAAAGAAAAGCCAGCAGTGCATCTAGCAAAG
AGCGCCGACCCCAAACCGGTCAAAAACAACGCGGGTCGCAGCGCTGCCAC
CGCGGCTGCCAGCCCGCAAGTCGTCATCAACAAGGACATCACCGAGTCCA
AGCTCAAGCTTTTGCAACAGTCCCCCCTCCGAAGGCTCATCCCCGAAGCT
GATCGGAAAGCGGCAGCCGCTCAGCTGCAAGCCAAACGCAGGCAGAAAAG
CAAGTCGCCCCAAAAGCCTGCTCATCCAGAAAGCTCAAACGAAGCTGCAC
AATCTAAACCGCCCAAGGCGCACATGGCTAAAACACGTGCTCAGCAACCC
GTTTCTGAGCACGAGCATAGTGATCCCGAAAACGTCCACAACGAAGGCGC
CTCGTTGACGAAGACCGAGGCCCGCCAAAACCTCGACGATCTCAAATTGG
GTGTCGCGAAGAAAAAAGAAGCCCGTAAGATGAGGTGGAAAGCTCGCCAA
CTTCGAAAAGACGGAAAGCTTGTCAAACCCGACAAGGACGTTGACCCTGG
AGTACTGTACTTGGGTCACATTCCGCACGGCTTTTATGAGAAGGAAATGA
GGAGTTATTTCTCTCAGTTCGGTGAAGTGCTGCGCGTTCGCCTCAGTCGA
TCTGTGAAAACTGGTCGCTCGAGAGGATACGCGTTCATCGAATTTGCTCA
CAAGGATGTCGCTCAAATCGCTGCCGACGCCATGGACGGCTACCTCATGC
ACAGACAGAAACTAGTCGCCCGGTTTGTGCCGCCGGAAAAGGTTCATGAG
AAAACGTTCAAGGGTGCCAATCGGACCTTCAGACAAATTCCGTGGGCTCG
TATTGAAAGAAGAAACATGCTGAATCGAGCAAGTGACCCTCTCAAGCTTG
CTGCTCGCTCAAAGAGGATTCTCAAATCCGCCAAGAGAAAGCGCGCCAGC
TTAGTGAGACAAGGACTGACTCACACGTTTCTGGAACTGCCAAGCCGAAG
TTGA
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