Gvermi12223.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12223.t1
Unique NameGvermi12223.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length368
Homology
BLAST of Gvermi12223.t1 vs. uniprot
Match: A0A2V3J003_9FLOR (Putative RNA-binding protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J003_9FLOR)

HSP 1 Score: 341 bits (875), Expect = 1.960e-113
Identity = 191/294 (64.97%), Postives = 221/294 (75.17%), Query Frame = 0
Query:   71 SPQVVINKDITESKLKLLQQSPLRRLIPEADRKAAAAQLQAKRRQKSKSPQKPAHPESSNEAAQSKPPKAHMAKTRAQQPVSEHEHSDPENVHNEGASLTKTEARQNLDDLKLGVAKKKEARKMRWKARQLRKDGKLVKPDKDVDPGVLYLGHIPHGFYEKEMRSYFSQFGEVLRVRLSRSVKTGRSRGYAFIEFAHKDVAQIAADAMDGYLMHRQKLVARFVPPEKVHEKTFKGANRTFRQIPWARIERRNMLNRASDPLKLAARSKRILKSAKRKRASLVRQGLTHTFLELP 364
            SPQ+VIN +ITESKLKLL++SPLRRLIPE DRKAAAAQL A RR +SK+         S + A ++P  A  AK +   P                    +  AR++LD LKLG+ KKKEAR+MRWK R+LRKDGKL   D D DPGV+YL HIPHGF+EKE+ +YFSQFG VLRVRLSRSVKT RSRGYAF+EFA K VAQIAADAMDGYLMHRQKLVA+FVP EKVH  TFKGANR FRQIPW+RIERR M+ RA DP+KLAARSK IL++A+R++  LV QGLTHT LELP
Sbjct:   40 SPQIVINPEITESKLKLLEKSPLRRLIPEKDRKAAAAQLIANRRNQSKT---------SQQTASAQPQTA--AKPKPNPPAK-----------------GRNGARKDLDKLKLGIVKKKEARRMRWKVRELRKDGKLPHNDSDTDPGVMYLAHIPHGFFEKEITAYFSQFGPVLRVRLSRSVKTARSRGYAFVEFADKQVAQIAADAMDGYLMHRQKLVAKFVPAEKVHPDTFKGANRNFRQIPWSRIERRAMIARAKDPVKLAARSKNILRAARRRQRVLVEQGLTHTLLELP 305          
BLAST of Gvermi12223.t1 vs. uniprot
Match: R7Q752_CHOCR (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q752_CHOCR)

HSP 1 Score: 202 bits (514), Expect = 3.080e-57
Identity = 124/295 (42.03%), Postives = 172/295 (58.31%), Query Frame = 0
Query:   71 SPQVVINKDITESKLKLLQQSPLRRLIPEADRKAAAAQLQAKRRQKSKSPQKPAHPESSNEAAQSKPPKAHMAKTRAQQPVSEHEHSDPENVHNEGASLTKTEARQNLDDLKLGVAKKKEARKMRWKARQLRKDGKLVKPDKDVDPGVLYLGHIPHGFYEKEMRSYFSQFGEVLRVRLSRSVKTGRSRGYAFIEFAHKDVAQIAADAMDGYLMHRQKLVARFVPPEKVHEKTFKGANRTFRQIPWARIERRNMLNRASDPLKLAARSKRILKSAKRKRASLVRQGLTHTFLELPS 365
            SP VV+N+ +T+ KL LL +SPL  L+ E D+ AAA Q+  +    S                       H+ +      V E    D     ++       +A  +  DL   VA++KE R  + + R+LRK G   +     + GV+YLGHIPHGFYE+E+R YF+QFG V  VRLSRS KT RSRGYAFIEF   ++AQ AA++MDGYLMH QKLVA+ VPPE++H +T KGA R F+++ ++ + R  ++ R+ DPLKLA RSK + K    K+A L + GL + F E+ S
Sbjct:  196 SPDVVLNRRMTKDKLSLLTRSPLSHLVSEEDKDAAAQQVYGQGASFS----------------------THVKRKLQNADVDEIIPLDS----SQPPKKKSKDANADAKDLAELVARRKERRIEKRRLRKLRKSGAREEESTPTESGVMYLGHIPHGFYEEEIRGYFAQFGRVTAVRLSRSKKTARSRGYAFIEFEDTEIAQKAAESMDGYLMHGQKLVAKVVPPERLHPETMKGAERKFKKVKFSTVMRNGLIRRSRDPLKLAQRSKHVQKKLHGKKARLEKMGLKYQFPEIAS 464          
BLAST of Gvermi12223.t1 vs. uniprot
Match: A0A836BMG7_9CHLO (RRM domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836BMG7_9CHLO)

HSP 1 Score: 157 bits (396), Expect = 5.220e-43
Identity = 76/150 (50.67%), Postives = 104/150 (69.33%), Query Frame = 0
Query:  211 DKDVDPGVLYLGHIPHGFYEKEMRSYFSQFGEVLRVRLSRSVKTGRSRGYAFIEFAHKDVAQIAADAMDGYLMHRQKLVARFVPPEKVHEKTFKGANRTFRQIPWARIERRNMLNRASDPLKLAARSKRILKSAKRKRASLVRQGLTHTF 360
            D +    VLYLGH+PHGFYEKEM  YFSQFG+V RVRLSRS +TG++RGYAF+EF H +VA +AA+AMDGY + +Q+L  + +PP KVH   F GANR F+ IPW ++ER    +R   P + AAR  ++++  K + A +   GL + +
Sbjct:   23 DGNAQARVLYLGHLPHGFYEKEMLGYFSQFGKVTRVRLSRSKRTGKARGYAFVEFMHPEVASVAAEAMDGYFLFKQRLSVKLLPPAKVHPLLFNGANRKFKVIPWRKVER-GRHDRERSPAEHAARIAKLIRRDKARAARIAEAGLEYEY 171          
BLAST of Gvermi12223.t1 vs. uniprot
Match: A0A2P6TMU9_CHLSO (MKI67 FHA domain-interacting nucleolar phospho n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TMU9_CHLSO)

HSP 1 Score: 151 bits (381), Expect = 1.040e-40
Identity = 69/143 (48.25%), Postives = 107/143 (74.83%), Query Frame = 0
Query:  218 VLYLGHIPHGFYEKEMRSYFSQFGEVLRVRLSRSVKTGRSRGYAFIEFAHKDVAQIAADAMDGYLMHRQKLVARFVPPEKVHEKTFKGANRTFRQIPWARIERRNMLNRASDPLKLAARSKRILKSAKRKRASLVRQGLTHTF 360
            V+YLGH+PHGFYEK+++ YFSQFG+V +VRLSR+ K+G+S+GYAF+EF+  +VA+IAADAMDGY++  QKL +R +P ++VH   FKGANR F+Q+PW +IER    NR     +   R+++ ++  +R++  + + G+ + +
Sbjct:   34 VVYLGHLPHGFYEKQLKEYFSQFGKVTKVRLSRNKKSGKSKGYAFLEFSSAEVAKIAADAMDGYMLFTQKLTSRVLPADEVHPDLFKGANRVFKQVPWQKIERERQ-NRDRTAAEAEKRARQAVERDERRQRRIAQAGIDYQY 175          
BLAST of Gvermi12223.t1 vs. uniprot
Match: A0A250XKQ7_9CHLO (RRM domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XKQ7_9CHLO)

HSP 1 Score: 148 bits (373), Expect = 1.900e-39
Identity = 69/156 (44.23%), Postives = 108/156 (69.23%), Query Frame = 0
Query:  210 PDKDVDPGVLYLGHIPHGFYEKEMRSYFSQFGEVLRVRLSRSVKTGRSRGYAFIEFAHKDVAQIAADAMDGYLMHRQKLVARFVPPEKVHEKTFKGANRTFRQIPWARIERRNMLNRASDPLKLAARSKRILKSAKRKRASLVRQGLTHTFLELPS 365
            P       V+Y+GH+PHGFYEK++  +FSQFG++ RVRLSRS K+GR++ YAF+EF + +VAQ+AA+AM+GY +  QKL  + +P +K+H + FKGANR F+ +PW+++ERR   ++   P +LA R  R +K  K ++  ++  G+ + +  L S
Sbjct:   30 PSSSEQSRVVYIGHLPHGFYEKQLLGFFSQFGKLTRVRLSRSKKSGRAKHYAFLEFQYPEVAQVAAEAMNGYFLFSQKLDVKLMPVDKIHPELFKGANRRFKNVPWSKLERRRH-DKELTPAELARRVSRAIKKDKERQKKILEAGIEYEYPSLGS 184          
BLAST of Gvermi12223.t1 vs. uniprot
Match: D8TQJ3_VOLCA (RRM domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TQJ3_VOLCA)

HSP 1 Score: 146 bits (368), Expect = 6.900e-39
Identity = 66/139 (47.48%), Postives = 103/139 (74.10%), Query Frame = 0
Query:  218 VLYLGHIPHGFYEKEMRSYFSQFGEVLRVRLSRSVKTGRSRGYAFIEFAHKDVAQIAADAMDGYLMHRQKLVARFVPPEKVHEKTFKGANRTFRQIPWARIERRNMLNRASDPLKLAARSKRILKSAKRKRASLVRQGL 356
            V+Y+GH+PHGF+EK+M  YFSQFG+V R+RLSRS KTG ++GYAF+EF + +VA++AA+AMDGY + +Q+L  + +PP +VH + F+GANR F+ IPW R+ER+   +R   P + A R  ++++  K+++  +   G+
Sbjct:   29 VVYVGHVPHGFFEKQMLGYFSQFGKVTRLRLSRSKKTGNAKGYAFLEFQYPEVARVAAEAMDGYFLFKQRLKCKLIPPSRVHPQLFQGANRRFKVIPWRRVERQRH-DRERTPTEHAQRVAKLVRKDKQRQKKIKEAGI 166          
BLAST of Gvermi12223.t1 vs. uniprot
Match: A0A1S8W0N7_9FUNG (RRM domain-containing protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W0N7_9FUNG)

HSP 1 Score: 148 bits (374), Expect = 1.260e-37
Identity = 76/161 (47.20%), Postives = 107/161 (66.46%), Query Frame = 0
Query:  200 QLRKDGKLVKPDKDVDPGVLYLGHIPHGFYEKEMRSYFSQFGEVLRVRLSRSVKTGRSRGYAFIEFAHKDVAQIAADAMDGYLMHRQKLVARFVPPEKVHEKTFKGANRTFRQIPWARIERRNMLNRASDPLKLAARSKRILKSAKRKRASLVRQGLTHTF 360
            +L+   K V  +   +PGV+YLGH+PHGFYE EM SYFSQFGEV R+RLSR+ KTGRS+ YAFIEF   +VA+I +D M+ YLM  Q +  + V  EK+H  TFKG NR F+ +PW +++R+   N+     + +A +KR+ K+  +KR  L   G+ + F
Sbjct:  190 KLKNSTKKVNSNPKAEPGVVYLGHVPHGFYEAEMMSYFSQFGEVTRLRLSRNKKTGRSKHYAFIEFKDAEVAKIVSDTMNNYLMFNQIIKCKLVAAEKLHVDTFKGCNRKFKVVPWNKVQRQKQ-NKPKTLEQWSANTKRLEKNDVKKRKHLESLGIEYEF 349          
BLAST of Gvermi12223.t1 vs. uniprot
Match: A8J450_CHLRE (Predicted protein n=2 Tax=Chlamydomonas TaxID=3052 RepID=A8J450_CHLRE)

HSP 1 Score: 142 bits (359), Expect = 1.310e-37
Identity = 69/146 (47.26%), Postives = 101/146 (69.18%), Query Frame = 0
Query:  218 VLYLGHIPHGFYEKEMRSYFSQFGEVLRVRLSRSVKTGRSRGYAFIEFAHKDVAQIAADAMDGYLMHRQKLVARFVPPEKVHEKTFKGANRTFRQIPWARIERRNMLNRASDPLKLAARSKRILKSAKRKRASLVRQGLTHTFLEL 363
            V+Y+GHIPHGF+EK+M  YFSQFG+V RVRLSRS +TG S+GYAFIEF H +VA++AA+AMDGY + +Q+L  + +PP +VH   F GANR F+ IP   +ER+    +   P + AAR  ++++  K ++  +   G+ + +  L
Sbjct:   25 VIYVGHIPHGFFEKQMLGYFSQFGKVTRVRLSRSKRTGNSKGYAFIEFQHPEVARVAAEAMDGYFIFKQRLSCKLMPPARVHPMLFNGANRKFKVIPRRTVERKRH-EKERTPKEQAARIAKLIRRDKLRQKKITEAGIEYEYAGL 169          
BLAST of Gvermi12223.t1 vs. uniprot
Match: A0A7S0KGS0_MICPS (Hypothetical protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0KGS0_MICPS)

HSP 1 Score: 147 bits (370), Expect = 3.560e-37
Identity = 87/206 (42.23%), Postives = 128/206 (62.14%), Query Frame = 0
Query:  159 PENVHNEGASLTKTEARQNLDDLKLGVAKK---KEARKMRWKARQLRKDGKLVKPDKDVDPGVLYLGHIPHGFYEKEMRSYFSQFGEVLRVRLSRSVKTGRSRGYAFIEFAHKDVAQIAADAMDGYLMHRQKLVARFVPPEKVHEKTFKGANRTFRQIPWAR-IERRNMLNRASDPLKLAARSKRILKSAKRKRASLVRQGLTHTF 360
            P+NV   G  + K E+    D + + VAKK   KEA K+R      +K       +KD  P VLY+GH+PHGFYE++MR YFSQFGEV R+RLSR+ KTG+S+ YAF+EF H +VAQI A++M+GYL+    L  R +   + H + +KGANR F+Q+PW +    ++   R++D  K  ARS  +++  +R+R  +   G+ + F
Sbjct:  104 PKNV---GDDIIKLESDSEGDGIPVPVAKKAAKKEAAKLR------KKIAGAFGREKDERPKVLYIGHVPHGFYEEQMRGYFSQFGEVTRLRLSRNKKTGKSKHYAFVEFKHPEVAQIVAESMNGYLLFESVLKVRTMTEAECHPEMWKGANRKFKQVPWQKKAADQHDRERSADEQK--ARSAALIRGERRRRKKIADAGIEYDF 298          
BLAST of Gvermi12223.t1 vs. uniprot
Match: C1E649_MICCC (RRM domain-containing protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E649_MICCC)

HSP 1 Score: 140 bits (353), Expect = 3.860e-37
Identity = 70/150 (46.67%), Postives = 103/150 (68.67%), Query Frame = 0
Query:  212 KDVDPGVLYLGHIPHGFYEKEMRSYFSQFGEVLRVRLSRSVKTGRSRGYAFIEFAHKDVAQIAADAMDGYLMHRQKLVARFVPPEKVHEKTFKGANRTFRQIPWAR-IERRNMLNRASDPLKLAARSKRILKSAKRKRASLVRQGLTHTF 360
            KD  P VLY+GH+PHGFYE++MR YFSQFGEV R+RLSR+ KTG+S+ YAF+EF H +VAQI A++M+GYL+    L  R +   + H + +KGANR F+Q+PW +    ++   R++D  K  AR+  +L+  +R+R  +   G+ + F
Sbjct:    1 KDERPKVLYIGHVPHGFYEEQMRGYFSQFGEVTRLRLSRNKKTGKSKHYAFVEFKHPEVAQIVAESMNGYLLFESVLKVRTMTEAECHPEMWKGANRKFKQVPWQKKAATQHDRERSADEQK--ARNSALLRGERRRRKKIADAGIEYDF 148          
The following BLAST results are available for this feature:
BLAST of Gvermi12223.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J003_9FLOR1.960e-11364.97Putative RNA-binding protein n=1 Tax=Gracilariopsi... [more]
R7Q752_CHOCR3.080e-5742.03RRM domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A836BMG7_9CHLO5.220e-4350.67RRM domain-containing protein n=1 Tax=Edaphochlamy... [more]
A0A2P6TMU9_CHLSO1.040e-4048.25MKI67 FHA domain-interacting nucleolar phospho n=1... [more]
A0A250XKQ7_9CHLO1.900e-3944.23RRM domain-containing protein n=1 Tax=Chlamydomona... [more]
D8TQJ3_VOLCA6.900e-3947.48RRM domain-containing protein n=1 Tax=Volvox carte... [more]
A0A1S8W0N7_9FUNG1.260e-3747.20RRM domain-containing protein n=1 Tax=Batrachochyt... [more]
A8J450_CHLRE1.310e-3747.26Predicted protein n=2 Tax=Chlamydomonas TaxID=3052... [more]
A0A7S0KGS0_MICPS3.560e-3742.23Hypothetical protein n=2 Tax=Micromonas pusilla Ta... [more]
C1E649_MICCC3.860e-3746.67RRM domain-containing protein (Fragment) n=1 Tax=M... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 218..291
e-value: 6.5E-18
score: 75.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 219..287
e-value: 1.3E-14
score: 53.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 217..295
score: 16.585409
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 145..303
e-value: 2.4E-24
score: 88.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..175
NoneNo IPR availablePANTHERPTHR12311:SF8SUBFAMILY NOT NAMEDcoord: 111..348
NoneNo IPR availableCDDcd12307RRM_NIFK_likecoord: 218..291
e-value: 2.31753E-41
score: 137.706
IPR039119ABT1/Esf2PANTHERPTHR12311ACTIVATOR OF BASAL TRANSCRIPTION 1coord: 111..348
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 208..303

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3899370..3900473 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12223.t1Gvermi12223.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_3404 3899370..3900473 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12223.t1 ID=Gvermi12223.t1|Name=Gvermi12223.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=368bp
MSSPSTTPRARSISKKSPRIRQSSSAQRLAPRTNASANPLKEKPAVHLAK
SADPKPVKNNAGRSAATAAASPQVVINKDITESKLKLLQQSPLRRLIPEA
DRKAAAAQLQAKRRQKSKSPQKPAHPESSNEAAQSKPPKAHMAKTRAQQP
VSEHEHSDPENVHNEGASLTKTEARQNLDDLKLGVAKKKEARKMRWKARQ
LRKDGKLVKPDKDVDPGVLYLGHIPHGFYEKEMRSYFSQFGEVLRVRLSR
SVKTGRSRGYAFIEFAHKDVAQIAADAMDGYLMHRQKLVARFVPPEKVHE
KTFKGANRTFRQIPWARIERRNMLNRASDPLKLAARSKRILKSAKRKRAS
LVRQGLTHTFLELPSRS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR039119ABT1/Esf2
IPR035979RBD_domain_sf