Gvermi12157.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12157.t1
Unique NameGvermi12157.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length67
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3624576..3624877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38833.XP_003057152.1
PFAMsDUF4787
Max annot lvl2759|Eukaryota
KEGG koko:K03686
Evalue2.15e-09
EggNOG OGs2BRQZ@1|root,2S1X1@2759|Eukaryota
DescriptionDomain of unknown function (DUF4787)
COG categoryS
BRITEko00000,ko03029,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12157Gvermi12157Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3624576..3624877 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12157.t1Gvermi12157.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3624576..3624877 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12157.t1.start1Gvermi12157.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3624576..3624578 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12157.t1.CDS1Gvermi12157.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3624576..3624662 +
Gvermi12157.t1.CDS2Gvermi12157.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3624764..3624877 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12157.t1.exon1Gvermi12157.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3624576..3624662 +
Gvermi12157.t1.exon2Gvermi12157.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3624764..3624877 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12157.t1.intron1Gvermi12157.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3624663..3624763 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12157.t1.stop1Gvermi12157.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3624875..3624877 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12157.t1 ID=Gvermi12157.t1|Name=Gvermi12157.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=67bp
LPRVARDTHNCELRCVSAECYASVYAHQPLEEGEIDYARMRAFVKCAHNA
LLRSLKRTRAAAPPSQ*
back to top

spliced messenger RNA

>Gvermi12157.t1 ID=Gvermi12157.t1|Name=Gvermi12157.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=201bp|location=Sequence derived from alignment at ScGOVlb_3404:3624576..3624877+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCCGCGCGTCGCGCGCGACACGCACAACTGCGAGCTGCGCTGCGTCAG
CGCCGAGTGCTACGCGAGCGTGTACGCGCACCAGCCGCTCGAGGAGGGCG
AAATCGACTACGCGCGCATGCGCGCCTTTGTCAAGTGTGCGCACAACGCT
CTGCTGCGCTCGCTCAAGcgcacccgcgccgccgcaccgccctcgcagtg
a
back to top

protein sequence of Gvermi12157.t1

>Gvermi12157.t1 ID=Gvermi12157.t1|Name=Gvermi12157.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=67bp
LPRVARDTHNCELRCVSAECYASVYAHQPLEEGEIDYARMRAFVKCAHNA
LLRSLKRTRAAAPPSQ*
back to top

mRNA from alignment at ScGOVlb_3404:3624576..3624877+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12157.t1 ID=Gvermi12157.t1|Name=Gvermi12157.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=302bp|location=Sequence derived from alignment at ScGOVlb_3404:3624576..3624877+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCCGCGCGTCGCGCGCGACACGCACAACTGCGAGCTGCGCTGCGTCAG
CGCCGAGTGCTACGCGAGCGTGTACGCGCACCAGCCGGTAAGCCGCGccc
cccccccccccccccccgccgccgcgtcgcgccccccgttgccgccctgc
tcactcgcccgcccccgcgccccgccccccgcgcccAGCTCGAGGAGGGC
GAAATCGACTACGCGCGCATGCGCGCCTTTGTCAAGTGTGCGCACAACGC
TCTGCTGCGCTCGCTCAAGcgcacccgcgccgccgcaccgccctcgcagt
ga
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:3624576..3624877+

>Gvermi12157.t1 ID=Gvermi12157.t1|Name=Gvermi12157.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=201bp|location=Sequence derived from alignment at ScGOVlb_3404:3624576..3624877+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCCGCGCGTCGCGCGCGACACGCACAACTGCGAGCTGCGCTGCGTCAG
CGCCGAGTGCTACGCGAGCGTGTACGCGCACCAGCCGCTCGAGGAGGGCG
AAATCGACTACGCGCGCATGCGCGCCTTTGTCAAGTGTGCGCACAACGCT
CTGCTGCGCTCGCTCAAGcgcacccgcgccgccgcaccgccctcgcagtg
a
back to top