Ggra8552.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8552.t1
Unique NameGgra8552.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length113
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000191_piloncontigtig00000191_pilon:167481..167819 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707234.1
Preferred nameSAR1A
PFAMsArf
Max annot lvl2759|Eukaryota
KEGG koko:K01462,ko:K07953
KEGG Pathwayko04141,ko05134,map04141,map05134
KEGG ModuleM00404
GOsGO:0000166,GO:0000266,GO:0000902,GO:0001882,GO:0001883,GO:0002164,GO:0002165,GO:0002168,GO:0002376,GO:0002474,GO:0002478,GO:0002495,GO:0002504,GO:0002790,GO:0003002,GO:0003400,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0006997,GO:0006998,GO:0007005,GO:0007006,GO:0007029,GO:0007154,GO:0007165,GO:0007264,GO:0007275,GO:0007389,GO:0007399,GO:0007507,GO:0007591,GO:0008104,GO:0008150,GO:0008363,GO:0009306,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009888,GO:0009987,GO:0010256,GO:0010639,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016462,GO:0016528,GO:0016529,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019882,GO:0019884,GO:0019886,GO:0022008,GO:0022603,GO:0022604,GO:0022607,GO:0023052,GO:0030117,GO:0030120,GO:0030127,GO:0030133,GO:0030134,GO:0030135,GO:0030154,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031333,GO:0031344,GO:0031346,GO:0031410,GO:0031982,GO:0031984,GO:0032386,GO:0032387,GO:0032388,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0034613,GO:0034622,GO:0035017,GO:0035050,GO:0035293,GO:0035295,GO:0035459,GO:0035556,GO:0035639,GO:0036094,GO:0040003,GO:0042175,GO:0042303,GO:0042335,GO:0042337,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043933,GO:0044085,GO:0044087,GO:0044232,GO:0044233,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046903,GO:0046907,GO:0048002,GO:0048070,GO:0048079,GO:0048081,GO:0048087,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048209,GO:0048285,GO:0048475,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048568,GO:0048699,GO:0048731,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050773,GO:0050775,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051051,GO:0051094,GO:0051128,GO:0051129,GO:0051130,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051240,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0051716,GO:0051960,GO:0051962,GO:0060284,GO:0060341,GO:0060429,GO:0060627,GO:0060628,GO:0061024,GO:0065003,GO:0065007,GO:0070201,GO:0070727,GO:0070861,GO:0070863,GO:0070971,GO:0071702,GO:0071705,GO:0071840,GO:0072359,GO:0072657,GO:0072659,GO:0090087,GO:0090110,GO:0090113,GO:0090114,GO:0090316,GO:0097110,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:0120035,GO:1900006,GO:1901265,GO:1901301,GO:1901303,GO:1901363,GO:1903827,GO:1903829,GO:1904951,GO:1990778,GO:2000026
Evalue7.97e-46
EggNOG OGsKOG0077@1|root,KOG0077@2759|Eukaryota
EC3.5.1.88
Descriptionintracellular protein transport
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko04031,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8552Ggra8552Gracilaria gracilis GNS1m malegenetig00000191_pilon 167481..167819 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8552.t1.stop1Ggra8552.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000191_pilon 167481..167483 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8552.t1.CDS1Ggra8552.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000191_pilon 167481..167819 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8552.t1.exon1Ggra8552.t1.exon1Gracilaria gracilis GNS1m maleexontig00000191_pilon 167481..167819 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8552.t1.start1Ggra8552.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000191_pilon 167817..167819 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8552.t1Ggra8552.t1Gracilaria gracilis GNS1m malepolypeptidetig00000191_pilon 167481..167819 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8552.t1 ID=Ggra8552.t1|Name=Ggra8552.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=113bp
MVRLYLSVHAIIAKWVNRWLSNGRTHTHYYKNAKVLFLGLDNAGKTTLMH
VLRDDRVAKHIPTLQPTAEEVVVGNIRFRAFDLGGHAAAHQIWRNYYAMV
DGVVFLVNAVDR*
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spliced messenger RNA

>Ggra8552.t1 ID=Ggra8552.t1|Name=Ggra8552.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=339bp|location=Sequence derived from alignment at tig00000191_pilon:167481..167819- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGTTTGTATCTGAGCGTCCACGCGATCATAGCGAAGTGGGTCAA
TAGATGGCTCTCGAACGGAAGAACACACACACACTACTACAAGAACGCCA
AGGTCCTCTTTCTTGGCCTGGACAATGCCGGAAAGACCACCCTGATGCAC
GTGCTGCGCGACGATCGCGTCGCCAAACACATACCCACGCTGCAGCCCAC
CGCCGAGGAAGTCGTGGTCGGAAACATTCGCTTCCGCGCCTTCGACCTTG
GCGGCCATGCCGCCGCTCACCAGATTTGGCGCAATTACTATGCCATGGTC
GATGGCGTCGTCTTCCTGGTGAACGCCGTCGACAGATAG
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protein sequence of Ggra8552.t1

>Ggra8552.t1 ID=Ggra8552.t1|Name=Ggra8552.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=113bp
MVRLYLSVHAIIAKWVNRWLSNGRTHTHYYKNAKVLFLGLDNAGKTTLMH
VLRDDRVAKHIPTLQPTAEEVVVGNIRFRAFDLGGHAAAHQIWRNYYAMV
DGVVFLVNAVDR*
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mRNA from alignment at tig00000191_pilon:167481..167819-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8552.t1 ID=Ggra8552.t1|Name=Ggra8552.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=339bp|location=Sequence derived from alignment at tig00000191_pilon:167481..167819- (Gracilaria gracilis GNS1m male)
ATGGTGCGTTTGTATCTGAGCGTCCACGCGATCATAGCGAAGTGGGTCAA
TAGATGGCTCTCGAACGGAAGAACACACACACACTACTACAAGAACGCCA
AGGTCCTCTTTCTTGGCCTGGACAATGCCGGAAAGACCACCCTGATGCAC
GTGCTGCGCGACGATCGCGTCGCCAAACACATACCCACGCTGCAGCCCAC
CGCCGAGGAAGTCGTGGTCGGAAACATTCGCTTCCGCGCCTTCGACCTTG
GCGGCCATGCCGCCGCTCACCAGATTTGGCGCAATTACTATGCCATGGTC
GATGGCGTCGTCTTCCTGGTGAACGCCGTCGACAGATAG
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Coding sequence (CDS) from alignment at tig00000191_pilon:167481..167819-

>Ggra8552.t1 ID=Ggra8552.t1|Name=Ggra8552.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=339bp|location=Sequence derived from alignment at tig00000191_pilon:167481..167819- (Gracilaria gracilis GNS1m male)
ATGGTGCGTTTGTATCTGAGCGTCCACGCGATCATAGCGAAGTGGGTCAA
TAGATGGCTCTCGAACGGAAGAACACACACACACTACTACAAGAACGCCA
AGGTCCTCTTTCTTGGCCTGGACAATGCCGGAAAGACCACCCTGATGCAC
GTGCTGCGCGACGATCGCGTCGCCAAACACATACCCACGCTGCAGCCCAC
CGCCGAGGAAGTCGTGGTCGGAAACATTCGCTTCCGCGCCTTCGACCTTG
GCGGCCATGCCGCCGCTCACCAGATTTGGCGCAATTACTATGCCATGGTC
GATGGCGTCGTCTTCCTGGTGAACGCCGTCGACAGATAG
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