Ggra3359.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3359.t1
Unique NameGgra3359.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length294
Homology
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BLAST of Ggra3359.t1 vs. uniprot
Match: A0A2V3IQM1 (Signal recognition particle 43 kDa protein, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQM1_9FLOR)

HSP 1 Score: 213 bits (542), Expect = 5.620e-65
Identity = 134/249 (53.82%), Postives = 158/249 (63.45%), Query Frame = 0 
Query:   48 MSAAAGEQEEGEENVMQGPSLAPSKPGVSTVGLSETESAFIEACYGADVGKIESLLDDGVAADISDVNGRTALHFCAGNGLPTLCSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIAEDMLEKTPAKRFFVANPNYDKLKEMVQVLDEATEVEEDXXXXXXXQ--NGVSTSVSENGEITEETENAKFVVRVKAKGESSEAVAPK---VKVDDVKVTIKIKEPKK 291
            M  A   Q+E EE++MQGPS AP+K GVSTVGL E E+ FIEACY ADV  IES++++   A ++DVNGR+ALHFCAGNGLPTLC+K                                                    EIAEDM EKTPAK+FF ANP ++KLKEMV VLDEATEVEE XXXXX  +  NGV+ SV+E G+ITEETENAKFVVRVK +GE+S     +   VKVDDVKVTIKIKE +K
Sbjct:    1 MCDANAPQQEQEESIMQGPSQAPTKAGVSTVGLGEREAKFIEACYNADVESIESMMEEDFVASVTDVNGRSALHFCAGNGLPTLCTKLMDRGATMDKQDVLGFTPLHMATGYVKLDTVKLLVERGADANIASFDGKLAVEIAEDMFEKTPAKQFFRANPTHEKLKEMVDVLDEATEVEEXXXXXXGLEEENGVTRSVNEFGDITEETENAKFVVRVKPRGEASSGNGIERRAVKVDDVKVTIKIKEAEK 249
The following BLAST results are available for this feature:
BLAST of Ggra3359.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IQM15.620e-6553.82Signal recognition particle 43 kDa protein, chloro... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 214..234
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 220..234
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 220..251
NoneNo IPR availablePANTHERPTHR24128HOMEOBOX PROTEIN WARIAIcoord: 89..222
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 148..177
score: 10.709951
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 115..146
score: 9.807884
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 148..177
e-value: 0.0017
score: 27.6
coord: 115..144
e-value: 0.0044
score: 26.2
coord: 82..113
e-value: 2600.0
score: 1.9
IPR002110Ankyrin repeatPFAMPF12796Ank_2coord: 90..177
e-value: 9.8E-11
score: 42.1
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 148..180
score: 10.81972
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 115..147
score: 10.7663
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 38..197
e-value: 1.4E-26
score: 94.9
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 85..191
IPR030300Signal recognition particle 43kDa proteinPANTHERPTHR24128:SF43SIGNAL RECOGNITION PARTICLE 43 KDA PROTEIN, CHLOROPLASTICcoord: 89..222

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:101048..101929 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3359.t1Ggra3359.t1Gracilaria gracilis GNS1m malemRNAtig00000189_pilon 101048..101929 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3359.t1 ID=Ggra3359.t1|Name=Ggra3359.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=294bp
MVAGFVFPSYLQSSTFTATSGTLDTRICGISGFRPQVQARNSWKVARMSA
AAGEQEEGEENVMQGPSLAPSKPGVSTVGLSETESAFIEACYGADVGKIE
SLLDDGVAADISDVNGRTALHFCAGNGLPTLCSKLLDKGATINKQDVLGF
TPLHMATGYIKIDTAKLLVEQGADANIACFAGKLPVEIAEDMLEKTPAKR
FFVANPNYDKLKEMVQVLDEATEVEEDDEKEEEEQNGVSTSVSENGEITE
ETENAKFVVRVKAKGESSEAVAPKVKVDDVKVTIKIKEPKKTT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR036770Ankyrin_rpt-contain_sf
IPR030300CPSRP43