Ggra3359.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3359.t1
Unique Name	Ggra3359.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	294

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000189_pilon	contig	tig00000189_pilon:101048..101929 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3359	Ggra3359	Gracilaria gracilis GNS1m male	gene	tig00000189_pilon 101048..101929 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3359.t1.start1	Ggra3359.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000189_pilon 101048..101050 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3359.t1.CDS1	Ggra3359.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000189_pilon 101048..101929 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3359.t1.exon1	Ggra3359.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000189_pilon 101048..101929 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3359.t1.stop1	Ggra3359.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000189_pilon 101927..101929 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3359.t1	Ggra3359.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000189_pilon 101048..101929 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000189_pilon:101048..101929+
coding sequence from alignment at tig00000189_pilon:101048..101929+

mRNA sequence

>Ggra3359.t1 ID=Ggra3359.t1|Name=Ggra3359.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=294bp
MVAGFVFPSYLQSSTFTATSGTLDTRICGISGFRPQVQARNSWKVARMSA
AAGEQEEGEENVMQGPSLAPSKPGVSTVGLSETESAFIEACYGADVGKIE
SLLDDGVAADISDVNGRTALHFCAGNGLPTLCSKLLDKGATINKQDVLGF
TPLHMATGYIKIDTAKLLVEQGADANIACFAGKLPVEIAEDMLEKTPAKR
FFVANPNYDKLKEMVQVLDEATEVEEDDEKEEEEQNGVSTSVSENGEITE
ETENAKFVVRVKAKGESSEAVAPKVKVDDVKVTIKIKEPKKTT*

spliced messenger RNA

>Ggra3359.t1 ID=Ggra3359.t1|Name=Ggra3359.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000189_pilon:101048..101929+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCAGGTTTCGTATTCCCGTCTTACTTGCAAAGCAGCACATTCAC
AGCAACTTCTGGAACTTTAGACACCAGAATATGTGGCATTTCCGGATTCA
GACCACAGGTGCAGGCAAGAAATTCATGGAAGGTTGCCAGAATGTCAGCG
GCCGCGGGAGAACAAGAAGAAGGCGAGGAGAACGTGATGCAGGGACCATC
GCTGGCGCCATCAAAACCAGGTGTTTCCACTGTCGGCCTCAGTGAAACGG
AGTCGGCGTTCATAGAAGCATGCTACGGCGCGGATGTGGGTAAGATTGAA
TCTTTGTTGGACGACGGCGTTGCGGCGGATATTTCCGATGTGAACGGACG
CACAGCACTTCATTTCTGCGCTGGGAACGGATTACCGACGCTATGTTCAA
AACTTTTAGACAAGGGAGCTACGATTAACAAGCAGGATGTGTTGGGGTTC
ACCCCGCTGCACATGGCTACTGGATACATTAAGATTGATACGGCTAAACT
GCTGGTTGAGCAAGGGGCAGACGCGAATATTGCATGCTTCGCCGGAAAGC
TTCCAGTGGAGATTGCGGAGGATATGTTGGAAAAAACACCTGCGAAGAGG
TTTTTTGTAGCGAATCCTAATTACGATAAACTAAAGGAAATGGTACAAGT
TTTGGACGAGGCTACagaagtggaggaggacgatgaaaaagaagaggaag
aacaaAATGGTGTTTCAACTTCGGTGAGTGAGAATGGAGAAATAACTGAA
GAGACAGAGAATGCAAAGTTTGTGGTGCGAGTGAAAGCTAAAGGAGAAAG
TTCAGAGGCTGTGGCACCGAAAGTCAAAGTGGACGACGTAAAAGTGACGA
TCAAGATCAAAGAACCCAAGAAAACGACATAA

protein sequence of Ggra3359.t1

>Ggra3359.t1 ID=Ggra3359.t1|Name=Ggra3359.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=294bp
MVAGFVFPSYLQSSTFTATSGTLDTRICGISGFRPQVQARNSWKVARMSA
AAGEQEEGEENVMQGPSLAPSKPGVSTVGLSETESAFIEACYGADVGKIE
SLLDDGVAADISDVNGRTALHFCAGNGLPTLCSKLLDKGATINKQDVLGF
TPLHMATGYIKIDTAKLLVEQGADANIACFAGKLPVEIAEDMLEKTPAKR
FFVANPNYDKLKEMVQVLDEATEVEEDDEKEEEEQNGVSTSVSENGEITE
ETENAKFVVRVKAKGESSEAVAPKVKVDDVKVTIKIKEPKKTT*

mRNA from alignment at tig00000189_pilon:101048..101929+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3359.t1 ID=Ggra3359.t1|Name=Ggra3359.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000189_pilon:101048..101929+ (Gracilaria gracilis GNS1m male)
ATGGTTGCAGGTTTCGTATTCCCGTCTTACTTGCAAAGCAGCACATTCAC
AGCAACTTCTGGAACTTTAGACACCAGAATATGTGGCATTTCCGGATTCA
GACCACAGGTGCAGGCAAGAAATTCATGGAAGGTTGCCAGAATGTCAGCG
GCCGCGGGAGAACAAGAAGAAGGCGAGGAGAACGTGATGCAGGGACCATC
GCTGGCGCCATCAAAACCAGGTGTTTCCACTGTCGGCCTCAGTGAAACGG
AGTCGGCGTTCATAGAAGCATGCTACGGCGCGGATGTGGGTAAGATTGAA
TCTTTGTTGGACGACGGCGTTGCGGCGGATATTTCCGATGTGAACGGACG
CACAGCACTTCATTTCTGCGCTGGGAACGGATTACCGACGCTATGTTCAA
AACTTTTAGACAAGGGAGCTACGATTAACAAGCAGGATGTGTTGGGGTTC
ACCCCGCTGCACATGGCTACTGGATACATTAAGATTGATACGGCTAAACT
GCTGGTTGAGCAAGGGGCAGACGCGAATATTGCATGCTTCGCCGGAAAGC
TTCCAGTGGAGATTGCGGAGGATATGTTGGAAAAAACACCTGCGAAGAGG
TTTTTTGTAGCGAATCCTAATTACGATAAACTAAAGGAAATGGTACAAGT
TTTGGACGAGGCTACagaagtggaggaggacgatgaaaaagaagaggaag
aacaaAATGGTGTTTCAACTTCGGTGAGTGAGAATGGAGAAATAACTGAA
GAGACAGAGAATGCAAAGTTTGTGGTGCGAGTGAAAGCTAAAGGAGAAAG
TTCAGAGGCTGTGGCACCGAAAGTCAAAGTGGACGACGTAAAAGTGACGA
TCAAGATCAAAGAACCCAAGAAAACGACATAA

Coding sequence (CDS) from alignment at tig00000189_pilon:101048..101929+

>Ggra3359.t1 ID=Ggra3359.t1|Name=Ggra3359.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=882bp|location=Sequence derived from alignment at tig00000189_pilon:101048..101929+ (Gracilaria gracilis GNS1m male)
ATGGTTGCAGGTTTCGTATTCCCGTCTTACTTGCAAAGCAGCACATTCAC
AGCAACTTCTGGAACTTTAGACACCAGAATATGTGGCATTTCCGGATTCA
GACCACAGGTGCAGGCAAGAAATTCATGGAAGGTTGCCAGAATGTCAGCG
GCCGCGGGAGAACAAGAAGAAGGCGAGGAGAACGTGATGCAGGGACCATC
GCTGGCGCCATCAAAACCAGGTGTTTCCACTGTCGGCCTCAGTGAAACGG
AGTCGGCGTTCATAGAAGCATGCTACGGCGCGGATGTGGGTAAGATTGAA
TCTTTGTTGGACGACGGCGTTGCGGCGGATATTTCCGATGTGAACGGACG
CACAGCACTTCATTTCTGCGCTGGGAACGGATTACCGACGCTATGTTCAA
AACTTTTAGACAAGGGAGCTACGATTAACAAGCAGGATGTGTTGGGGTTC
ACCCCGCTGCACATGGCTACTGGATACATTAAGATTGATACGGCTAAACT
GCTGGTTGAGCAAGGGGCAGACGCGAATATTGCATGCTTCGCCGGAAAGC
TTCCAGTGGAGATTGCGGAGGATATGTTGGAAAAAACACCTGCGAAGAGG
TTTTTTGTAGCGAATCCTAATTACGATAAACTAAAGGAAATGGTACAAGT
TTTGGACGAGGCTACagaagtggaggaggacgatgaaaaagaagaggaag
aacaaAATGGTGTTTCAACTTCGGTGAGTGAGAATGGAGAAATAACTGAA
GAGACAGAGAATGCAAAGTTTGTGGTGCGAGTGAAAGCTAAAGGAGAAAG
TTCAGAGGCTGTGGCACCGAAAGTCAAAGTGGACGACGTAAAAGTGACGA
TCAAGATCAAAGAACCCAAGAAAACGACATAA