Ggra3338.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3338.t1
Unique NameGgra3338.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length281
Homology
BLAST of Ggra3338.t1 vs. uniprot
Match: A0A0C1Y2R7 (Type IV secretion protein Rhs n=1 Tax=Streptomyces sp. 150FB TaxID=1576605 RepID=A0A0C1Y2R7_9ACTN)

HSP 1 Score: 70.1 bits (170), Expect = 8.520e-10
Identity = 50/141 (35.46%), Postives = 69/141 (48.94%), Query Frame = 0
Query:   58 GGYLNYEGFNSDEGTLGASALMNSDTYWNLRKPTAPDRSIEPSGWEDLPVPEPKGSHRNRCHLIGAQLGGSNKDGRNFVTCHRNANSPIMAFYEKKVANLLASVDRTSPWKRDKG--VLFYAIPEY-GANLYPERIRVRSE 195
            GG ++Y          G +A +          P     S++P+GWE       KG   NR HL+GAQ+GGSNKD RNFVT H  ANSPIM  YE +V   +           DKG  + + A P Y G ++ PE + + ++
Sbjct: 1413 GGRVHYRRLGPGGRAQGVTATLTRSMMGGTTNP-----SVDPAGWES-----DKGY--NRAHLLGAQIGGSNKDPRNFVTMHAYANSPIMRRYEGQVRKAV-----------DKGEVIEYSATPVYQGDSVIPEGVWLEAQ 1530          
BLAST of Ggra3338.t1 vs. uniprot
Match: DNA/RNA non-specific endonuclease n=2 Tax=unclassified Streptomyces TaxID=2593676 RepID=UPI0015E1ACF2 (DNA/RNA non-specific endonuclease n=2 Tax=unclassified Streptomyces TaxID=2593676 RepID=UPI0015E1ACF2)

HSP 1 Score: 69.7 bits (169), Expect = 1.030e-9
Identity = 34/75 (45.33%), Postives = 45/75 (60.00%), Query Frame = 0
Query:   94 DRSIEPSGWEDLPVPEPKGSHRNRCHLIGAQLGGSNKDGRNFVTCHRNANSPIMAFYEKKVANLLASVDRTSPWK 168
            D  ++P+GWE        G   NR HL+GAQLGGSNKD RNFVT H+ AN+P+M   E +V   +   + T  +K
Sbjct:  792 DPKVDPAGWES-------GKGYNRAHLLGAQLGGSNKDPRNFVTMHQYANTPVMRVIEGRVRKAIEKGNETVQYK 859          
BLAST of Ggra3338.t1 vs. uniprot
Match: A0A327WEI8 (RHS repeat-associated protein n=3 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A327WEI8_9ACTN)

HSP 1 Score: 68.6 bits (166), Expect = 2.770e-9
Identity = 37/96 (38.54%), Postives = 52/96 (54.17%), Query Frame = 0
Query:   59 GYLNYEGFNSDEGTLGASALMNSDTYWNLRKPTAPDRSIEPSGWEDLPVPEPKGSHRNRCHLIGAQLGGSNKDGRNFVTCHRNANSPIMAFYEKKV 154
            G + Y G +S +   G  A ++        +P+AP    EP GW+        G + NR HL+GAQ+GGSNK   NFVT HR+AN+P+   YE  +
Sbjct: 1370 GRVKYAGLDSKKRPKGVFAKLDQGMTGGKTRPSAPS---EPPGWQS-------GKNLNRGHLLGAQIGGSNKSVLNFVTLHRHANAPVHVHYENAI 1455          
BLAST of Ggra3338.t1 vs. uniprot
Match: A0A1H7V201 (RHS repeat-associated core domain-containing protein n=1 Tax=Streptacidiphilus jiangxiensis TaxID=235985 RepID=A0A1H7V201_STRJI)

HSP 1 Score: 66.2 bits (160), Expect = 1.590e-8
Identity = 36/81 (44.44%), Postives = 46/81 (56.79%), Query Frame = 0
Query:   74 GASALMNSDTYWNLRKPTAPDRSIEPSGWEDLPVPEPKGSHRNRCHLIGAQLGGSNKDGRNFVTCHRNANSPIMAFYEKKV 154
            G  AL++SD       P      ++P+GW         G   NR HL+GAQLGGSNKD RNFVT H+ AN+P+M   E +V
Sbjct: 1187 GVEALLSSDMMGGKTDP-----KVDPAGWVT-------GQGYNRAHLLGAQLGGSNKDPRNFVTMHQYANTPVMRDLEGQV 1255          
BLAST of Ggra3338.t1 vs. uniprot
Match: DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces thermodiastaticus TaxID=44061 RepID=UPI0016733ADA (DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces thermodiastaticus TaxID=44061 RepID=UPI0016733ADA)

HSP 1 Score: 65.5 bits (158), Expect = 2.350e-8
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 0
Query:   94 DRSIEPSGWEDLPVPEPKGSHRNRCHLIGAQLGGSNKDGRNFVTCHRNANSPIMAFYEKKVANLLASVDRTSPWKRDKG-VLFYAI-PEY-GANLYPERI 190
            D  ++P+GW+       KG   NR HL+GAQ+GGSNKD RNFVT H  ANSP+M  YE +V   +           DKG V+ Y++ P Y G ++ PE +
Sbjct:  504 DPRVDPAGWQSN-----KGF--NRAHLLGAQIGGSNKDPRNFVTMHSYANSPMMRRYETQVRKAV-----------DKGEVIEYSVTPVYKGDSVVPEGV 585          
BLAST of Ggra3338.t1 vs. uniprot
Match: A0A4R3BC48 (RHS repeat-associated protein n=1 Tax=Streptomyces sp. BK205 TaxID=2512164 RepID=A0A4R3BC48_9ACTN)

HSP 1 Score: 65.1 bits (157), Expect = 3.940e-8
Identity = 56/165 (33.94%), Postives = 78/165 (47.27%), Query Frame = 0
Query:   66 FNSDEGTLGASALMNSDTYWNLRKPTAPDRSIEPSGWEDLPVPEPKGSHRNRCHLIGAQLGGSNKDGRNFVTCHRNANSPIMAFYEKKVANLLASVDRTSPWKRDKGVLFYAI-PEY-GANLYPERIRVRSELYMSGVFQEVLQDLYVWNRDANGKFVTFECRGT 228
            ++ D G  GA   M++    ++      D   +P GWE       K    NR HL+GAQLGGSN D RNFVT H  ANSP+M   E +V        R +  K +  ++ Y++ P Y GAN  P  + VR E++ +  FQ             N  F+  + RGT
Sbjct: 1431 YSRDGGRPGA---MHATLGLDMMGANPTDPHGDPPGWE-------KDKGYNRAHLLGAQLGGSNYDPRNFVTMHSYANSPVMRHIENQV--------RAAVTKGE--IIQYSVTPVYDGANKIP--LGVRVEVHGNNGFQFTEHRSTGNTEPTNSAFIPNKKRGT 1573          
BLAST of Ggra3338.t1 vs. uniprot
Match: DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces sp. CT34 TaxID=1553907 RepID=UPI00068D88E3 (DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces sp. CT34 TaxID=1553907 RepID=UPI00068D88E3)

HSP 1 Score: 63.5 bits (153), Expect = 1.240e-7
Identity = 51/158 (32.28%), Postives = 71/158 (44.94%), Query Frame = 0
Query:   72 TLGASALMNSDTYWNLRKPTAPDRSIEPSGWEDLPVPEPKGSHRNRCHLIGAQLGGSNKDGRNFVTCHRNANSPIMAFYEKKVANLLASVDRTSPWKRDKGVLFYAIPEY-GANLYPERIRVRSELYMSGVFQEVLQDLYVWNRDANGKFVTFECRGT 228
            TLGA  +    T          D   +P GWE       K    NR HL+GAQLGGSN+D RNFVT H  ANSP+M   E +V          +  ++ + + +   P Y G++  P+ + V  E + S  FQ         +   N  F+  + RGT
Sbjct: 1176 TLGADMMGKHTT----------DPHGDPPGWE-------KDKGYNRAHLLGAQLGGSNRDPRNFVTMHAYANSPVMRHIENQVR---------AAAEKGETIQYSVTPVYEGSHPVPKGVTV--EAHGSNGFQFTQHKSTGISGSHNSAFIPNKKRGT 1305          
BLAST of Ggra3338.t1 vs. uniprot
Match: DUF6531 domain-containing protein n=1 Tax=Streptomyces sp. TRM68367 TaxID=2758415 RepID=UPI00165B338A (DUF6531 domain-containing protein n=1 Tax=Streptomyces sp. TRM68367 TaxID=2758415 RepID=UPI00165B338A)

HSP 1 Score: 63.5 bits (153), Expect = 1.270e-7
Identity = 31/64 (48.44%), Postives = 39/64 (60.94%), Query Frame = 0
Query:   91 TAPDRSIEPSGWEDLPVPEPKGSHRNRCHLIGAQLGGSNKDGRNFVTCHRNANSPIMAFYEKKV 154
            T P  + EP GW+        G + NR HL+GAQLGGSNK   NFVT HR+AN+P+   YE  +
Sbjct: 1393 TKPKPTSEPPGWQS-------GKNLNRGHLLGAQLGGSNKSVLNFVTLHRHANAPVHVHYENAI 1449          
BLAST of Ggra3338.t1 vs. uniprot
Match: A0A8E7ZLL3 (DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces sp. MG62 TaxID=2838015 RepID=A0A8E7ZLL3_9ACTN)

HSP 1 Score: 63.2 bits (152), Expect = 1.700e-7
Identity = 30/64 (46.88%), Postives = 38/64 (59.38%), Query Frame = 0
Query:   91 TAPDRSIEPSGWEDLPVPEPKGSHRNRCHLIGAQLGGSNKDGRNFVTCHRNANSPIMAFYEKKV 154
            T P  + EP GW+        G + NR HL+GAQ+GGSNK   NFVT HRN N+P+   YE  +
Sbjct: 1400 TRPRPTSEPPGWQS-------GKNLNRGHLLGAQIGGSNKSTLNFVTMHRNTNAPVHVHYENAI 1456          
BLAST of Ggra3338.t1 vs. uniprot
Match: A0A3S9YCU1 (Type IV secretion protein Rhs n=2 Tax=Streptomyces lydicus TaxID=47763 RepID=A0A3S9YCU1_9ACTN)

HSP 1 Score: 63.2 bits (152), Expect = 1.700e-7
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 0
Query:   91 TAPDRSIEPSGWEDLPVPEPKGSHRNRCHLIGAQLGGSNKDGRNFVTCHRNANSPIMAFYEKKV 154
            T P    EP GW+        G + NR H++GAQ+GGSNK  +NFVT HR+AN+P+M  YE ++
Sbjct: 1402 TNPRPPSEPPGWQS-------GKNFNRGHVLGAQIGGSNKAQQNFVTLHRHANAPVMVRYENQI 1458          
The following BLAST results are available for this feature:
BLAST of Ggra3338.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C1Y2R78.520e-1035.46Type IV secretion protein Rhs n=1 Tax=Streptomyces... [more]
DNA/RNA non-specific endonuclease n=2 Tax=unclassified Streptomyces TaxID=2593676 RepID=UPI0015E1ACF21.030e-945.33DNA/RNA non-specific endonuclease n=2 Tax=unclassi... [more]
A0A327WEI82.770e-938.54RHS repeat-associated protein n=3 Tax=unclassified... [more]
A0A1H7V2011.590e-844.44RHS repeat-associated core domain-containing prote... [more]
DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces thermodiastaticus TaxID=44061 RepID=UPI0016733ADA2.350e-843.00DNA/RNA non-specific endonuclease n=1 Tax=Streptom... [more]
A0A4R3BC483.940e-833.94RHS repeat-associated protein n=1 Tax=Streptomyces... [more]
DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces sp. CT34 TaxID=1553907 RepID=UPI00068D88E31.240e-732.28DNA/RNA non-specific endonuclease n=1 Tax=Streptom... [more]
DUF6531 domain-containing protein n=1 Tax=Streptomyces sp. TRM68367 TaxID=2758415 RepID=UPI00165B338A1.270e-748.44DUF6531 domain-containing protein n=1 Tax=Streptom... [more]
A0A8E7ZLL31.700e-746.88DNA/RNA non-specific endonuclease n=1 Tax=Streptom... [more]
A0A3S9YCU11.700e-746.88Type IV secretion protein Rhs n=2 Tax=Streptomyces... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044929DNA/RNA non-specific endonuclease superfamilyGENE3D3.40.570.10Extracellular Endonuclease, subunit Acoord: 34..220
e-value: 1.1E-21
score: 79.0
IPR044927Type VII secretion system protein EssD-likePFAMPF13930Endonuclea_NS_2coord: 99..158
e-value: 1.7E-10
score: 41.3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..280
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:52978..53820 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3338.t1Ggra3338.t1Gracilaria gracilis GNS1m malemRNAtig00000189_pilon 52978..53820 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3338.t1 ID=Ggra3338.t1|Name=Ggra3338.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=281bp
MPFQHRAIASVLTLLAVLHSAQATAINWKQAMDLNNTIRTRNVNKRDDAN
VNGFRDNGGYLNYEGFNSDEGTLGASALMNSDTYWNLRKPTAPDRSIEPS
GWEDLPVPEPKGSHRNRCHLIGAQLGGSNKDGRNFVTCHRNANSPIMAFY
EKKVANLLASVDRTSPWKRDKGVLFYAIPEYGANLYPERIRVRSELYMSG
VFQEVLQDLYVWNRDANGKFVTFECRGTWVQDGPPSLPADRISKSTSPCA
KAVEVSQLRRIFLDPASFFTPESDSVYFTI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR044929DNA/RNA_non-sp_Endonuclease_sf
IPR044927Endonuclea_NS_2