Ggra3338.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3338.t1
Unique NameGgra3338.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length281
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:52978..53820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog235985.BBPN01000004_gene3194
PFAMsRHS,RHS_repeat,Tox-HNH-EHHH
Max annot lvl201174|Actinobacteria
Evalue8.77e-09
EggNOG OGsCOG3209@1|root,COG3209@2|Bacteria,2GMBB@201174|Actinobacteria,2NFRY@228398|Streptacidiphilus
DescriptionRHS Repeat
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3338Ggra3338Gracilaria gracilis GNS1m malegenetig00000189_pilon 52978..53820 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3338.t1.stop1Ggra3338.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 52978..52980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3338.t1.CDS1Ggra3338.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 52978..53820 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3338.t1.exon1Ggra3338.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 52978..53820 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3338.t1.start1Ggra3338.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 53818..53820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3338.t1Ggra3338.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 52978..53820 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3338.t1 ID=Ggra3338.t1|Name=Ggra3338.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=281bp
MPFQHRAIASVLTLLAVLHSAQATAINWKQAMDLNNTIRTRNVNKRDDAN
VNGFRDNGGYLNYEGFNSDEGTLGASALMNSDTYWNLRKPTAPDRSIEPS
GWEDLPVPEPKGSHRNRCHLIGAQLGGSNKDGRNFVTCHRNANSPIMAFY
EKKVANLLASVDRTSPWKRDKGVLFYAIPEYGANLYPERIRVRSELYMSG
VFQEVLQDLYVWNRDANGKFVTFECRGTWVQDGPPSLPADRISKSTSPCA
KAVEVSQLRRIFLDPASFFTPESDSVYFTI*
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spliced messenger RNA

>Ggra3338.t1 ID=Ggra3338.t1|Name=Ggra3338.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=843bp|location=Sequence derived from alignment at tig00000189_pilon:52978..53820- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTTTCAGCACAGAGCAATTGCTTCAGTTCTTACGCTGCTGGCGGT
GTTGCATAGTGCACAAGCCACAGCCATCAATTGGAAACAAGCTATGGACT
TGAACAACACTATTCGGACAAGGAATGTTAACAAAAGAGATGACGCAAAC
GTCAACGGATTTCGGGATAACGGCGGTTATCTCAACTATGAAGGGTTTAA
CAGTGATGAAGGGACCCTGGGAGCATCTGCTTTGATGAACAGTGATACCT
ATTGGAATCTGAGGAAACCCACCGCTCCAGACCGAAGCATTGAACCTAGT
GGATGGGAAGACCTTCCAGTGCCCGAACCGAAAGGAAGCCACAGAAACAG
ATGTCATTTGATTGGCGCCCAACTGGGCGGCTCAAACAAAGATGGAAGGA
ACTTTGTGACGTGCCACCGCAATGCAAATTCGCCGATAATGGCTTTTTAT
GAGAAGAAAGTGGCCAACCTACTGGCTTCCGTCGATCGAACCAGTCCATG
GAAACGAGACAAAGGAGTGCTATTCTACGCTATTCCGGAGTATGGCGCCA
ACTTATATCCAGAAAGAATAAGAGTGAGATCAGAGCTTTATATGTCAGGA
GTTTTCCAAGAAGTACTTCAAGATTTGTACGTTTGGAACAGGGATGCGAA
CGGCAAGTTTGTGACTTTTGAGTGTCGGGGCACGTGGGTTCAGGATGGAC
CACCATCACTTCCGGCCGATCGAATTAGCAAGAGTACATCTCCGTGTGCG
AAGGCTGTAGAGGTATCCCAACTGCGCCGAATTTTTCTCGACCCAGCTTC
CTTTTTCACCCCAGAGTCTGATTCAGTGTATTTCACTATTTAG
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protein sequence of Ggra3338.t1

>Ggra3338.t1 ID=Ggra3338.t1|Name=Ggra3338.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=281bp
MPFQHRAIASVLTLLAVLHSAQATAINWKQAMDLNNTIRTRNVNKRDDAN
VNGFRDNGGYLNYEGFNSDEGTLGASALMNSDTYWNLRKPTAPDRSIEPS
GWEDLPVPEPKGSHRNRCHLIGAQLGGSNKDGRNFVTCHRNANSPIMAFY
EKKVANLLASVDRTSPWKRDKGVLFYAIPEYGANLYPERIRVRSELYMSG
VFQEVLQDLYVWNRDANGKFVTFECRGTWVQDGPPSLPADRISKSTSPCA
KAVEVSQLRRIFLDPASFFTPESDSVYFTI*
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mRNA from alignment at tig00000189_pilon:52978..53820-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3338.t1 ID=Ggra3338.t1|Name=Ggra3338.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=843bp|location=Sequence derived from alignment at tig00000189_pilon:52978..53820- (Gracilaria gracilis GNS1m male)
ATGCCTTTTCAGCACAGAGCAATTGCTTCAGTTCTTACGCTGCTGGCGGT
GTTGCATAGTGCACAAGCCACAGCCATCAATTGGAAACAAGCTATGGACT
TGAACAACACTATTCGGACAAGGAATGTTAACAAAAGAGATGACGCAAAC
GTCAACGGATTTCGGGATAACGGCGGTTATCTCAACTATGAAGGGTTTAA
CAGTGATGAAGGGACCCTGGGAGCATCTGCTTTGATGAACAGTGATACCT
ATTGGAATCTGAGGAAACCCACCGCTCCAGACCGAAGCATTGAACCTAGT
GGATGGGAAGACCTTCCAGTGCCCGAACCGAAAGGAAGCCACAGAAACAG
ATGTCATTTGATTGGCGCCCAACTGGGCGGCTCAAACAAAGATGGAAGGA
ACTTTGTGACGTGCCACCGCAATGCAAATTCGCCGATAATGGCTTTTTAT
GAGAAGAAAGTGGCCAACCTACTGGCTTCCGTCGATCGAACCAGTCCATG
GAAACGAGACAAAGGAGTGCTATTCTACGCTATTCCGGAGTATGGCGCCA
ACTTATATCCAGAAAGAATAAGAGTGAGATCAGAGCTTTATATGTCAGGA
GTTTTCCAAGAAGTACTTCAAGATTTGTACGTTTGGAACAGGGATGCGAA
CGGCAAGTTTGTGACTTTTGAGTGTCGGGGCACGTGGGTTCAGGATGGAC
CACCATCACTTCCGGCCGATCGAATTAGCAAGAGTACATCTCCGTGTGCG
AAGGCTGTAGAGGTATCCCAACTGCGCCGAATTTTTCTCGACCCAGCTTC
CTTTTTCACCCCAGAGTCTGATTCAGTGTATTTCACTATTTAG
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Coding sequence (CDS) from alignment at tig00000189_pilon:52978..53820-

>Ggra3338.t1 ID=Ggra3338.t1|Name=Ggra3338.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=843bp|location=Sequence derived from alignment at tig00000189_pilon:52978..53820- (Gracilaria gracilis GNS1m male)
ATGCCTTTTCAGCACAGAGCAATTGCTTCAGTTCTTACGCTGCTGGCGGT
GTTGCATAGTGCACAAGCCACAGCCATCAATTGGAAACAAGCTATGGACT
TGAACAACACTATTCGGACAAGGAATGTTAACAAAAGAGATGACGCAAAC
GTCAACGGATTTCGGGATAACGGCGGTTATCTCAACTATGAAGGGTTTAA
CAGTGATGAAGGGACCCTGGGAGCATCTGCTTTGATGAACAGTGATACCT
ATTGGAATCTGAGGAAACCCACCGCTCCAGACCGAAGCATTGAACCTAGT
GGATGGGAAGACCTTCCAGTGCCCGAACCGAAAGGAAGCCACAGAAACAG
ATGTCATTTGATTGGCGCCCAACTGGGCGGCTCAAACAAAGATGGAAGGA
ACTTTGTGACGTGCCACCGCAATGCAAATTCGCCGATAATGGCTTTTTAT
GAGAAGAAAGTGGCCAACCTACTGGCTTCCGTCGATCGAACCAGTCCATG
GAAACGAGACAAAGGAGTGCTATTCTACGCTATTCCGGAGTATGGCGCCA
ACTTATATCCAGAAAGAATAAGAGTGAGATCAGAGCTTTATATGTCAGGA
GTTTTCCAAGAAGTACTTCAAGATTTGTACGTTTGGAACAGGGATGCGAA
CGGCAAGTTTGTGACTTTTGAGTGTCGGGGCACGTGGGTTCAGGATGGAC
CACCATCACTTCCGGCCGATCGAATTAGCAAGAGTACATCTCCGTGTGCG
AAGGCTGTAGAGGTATCCCAACTGCGCCGAATTTTTCTCGACCCAGCTTC
CTTTTTCACCCCAGAGTCTGATTCAGTGTATTTCACTATTTAG
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