Ggra3374.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3374.t1
Unique NameGgra3374.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length77
Homology
BLAST of Ggra3374.t1 vs. uniprot
Match: A0A2V3IMW9 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMW9_9FLOR)

HSP 1 Score: 115 bits (288), Expect = 5.450e-32
Identity = 62/64 (96.88%), Postives = 62/64 (96.88%), Query Frame = 0
Query:   13 MEKLQQLKEVMDAVSKDSTKFFEKGNKAAGTRARKNLQELKKLAQELRVAIQDTKANMANPVAE 76
            MEKLQQLKEVMDAVSKDSTKFFEKGNKAAGTRARKNLQELKKLAQELRVAIQDTKANMAN  AE
Sbjct:   33 MEKLQQLKEVMDAVSKDSTKFFEKGNKAAGTRARKNLQELKKLAQELRVAIQDTKANMANTAAE 96          
BLAST of Ggra3374.t1 vs. uniprot
Match: A0A1X6NJJ2 (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NJJ2_PORUM)

HSP 1 Score: 77.8 bits (190), Expect = 2.110e-17
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 0
Query:   13 MEKLQQLKEVMDAVSKDSTKFFEKGNKAAGTRARKNLQELKKLAQELRVAIQDTK 67
            M+KLQ+L+  + AVSKDSTKFFE  NKAAGTRARK+LQELK LAQELRV IQ TK
Sbjct:    1 MDKLQELRNCIAAVSKDSTKFFEGNNKAAGTRARKHLQELKSLAQELRVLIQSTK 55          
BLAST of Ggra3374.t1 vs. uniprot
Match: A0A5J4Z6U9 (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z6U9_PORPP)

HSP 1 Score: 76.3 bits (186), Expect = 2.200e-16
Identity = 38/57 (66.67%), Postives = 49/57 (85.96%), Query Frame = 0
Query:   13 MEKLQQLKEVMDAVSKDSTKFFEKGNKAAGTRARKNLQELKKLAQELRVAIQDTKAN 69
            M+KL +LK  ++ +  D+TKF+  GNKAAGTRARK+LQELK+LAQELRVAIQ+TKA+
Sbjct:    1 MQKLVELKSCVETIENDTTKFYSNGNKAAGTRARKHLQELKQLAQELRVAIQETKAH 57          
BLAST of Ggra3374.t1 vs. uniprot
Match: A0A1X6NTL1 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NTL1_PORUM)

HSP 1 Score: 72.0 bits (175), Expect = 8.790e-15
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 0
Query:   13 MEKLQQLKEVMDAVSKDSTKFFEKGNKAAGTRARKNLQELKKLAQELRVAIQDTK 67
            M+K+++L+  + AV KD+TKFFE  NKAAGTRARK+LQ+LK LAQELRV IQ TK
Sbjct:    1 MDKMEELRNCVAAVDKDATKFFEANNKAAGTRARKHLQQLKTLAQELRVLIQSTK 55          
BLAST of Ggra3374.t1 vs. uniprot
Match: A0A1M5DWH2 (Histone H1-like protein Hc1 n=5 Tax=Aliifodinibius TaxID=1397107 RepID=A0A1M5DWH2_9BACT)

HSP 1 Score: 70.5 bits (171), Expect = 1.320e-14
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 0
Query:   13 MEKLQQLKEVMDAVSKDSTKFFEKGNKAAGTRARKNLQELKKLAQELRVAIQDTKAN 69
            M +  +LK ++  V +D TKF+EKGNKAAGTRARK LQEL+KL+QE+R+ IQD K N
Sbjct:    1 MSRFDELKGIVTGVEEDMTKFYEKGNKAAGTRARKGLQELRKLSQEVRLEIQDIKNN 57          
BLAST of Ggra3374.t1 vs. uniprot
Match: A0A6A8Q4R0 (Histone H1 n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6A8Q4R0_9BACT)

HSP 1 Score: 69.3 bits (168), Expect = 3.780e-14
Identity = 34/57 (59.65%), Postives = 45/57 (78.95%), Query Frame = 0
Query:   13 MEKLQQLKEVMDAVSKDSTKFFEKGNKAAGTRARKNLQELKKLAQELRVAIQDTKAN 69
            M +++++K ++D  + D  KF+EKGNKAAGTRARK LQ LKKLAQE+R+ IQD K N
Sbjct:    1 MSRVEEIKNLVDETALDMDKFYEKGNKAAGTRARKGLQNLKKLAQEIRLEIQDIKNN 57          
BLAST of Ggra3374.t1 vs. uniprot
Match: A0A6M1SSM9 (Histone H1 n=1 Tax=Balneolaceae bacterium YR4-1 TaxID=2709311 RepID=A0A6M1SSM9_9BACT)

HSP 1 Score: 68.9 bits (167), Expect = 5.360e-14
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 0
Query:   13 MEKLQQLKEVMDAVSKDSTKFFEKGNKAAGTRARKNLQELKKLAQELRVAIQDTK 67
            M +   +K V++ V +D  KF+EKGNKAAGTRARK LQEL+KLAQE+R+ IQD K
Sbjct:    1 MSRFDDIKNVIEGVEEDMAKFYEKGNKAAGTRARKGLQELRKLAQEVRLEIQDIK 55          
BLAST of Ggra3374.t1 vs. uniprot
Match: A0A2V3IU42 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IU42_9FLOR)

HSP 1 Score: 69.3 bits (168), Expect = 8.270e-14
Identity = 35/55 (63.64%), Postives = 45/55 (81.82%), Query Frame = 0
Query:   13 MEKLQQLKEVMDAVSKDSTKFFEKGNKAAGTRARKNLQELKKLAQELRVAIQDTK 67
            MEK  +L   ++ + +D++KFF  GNKAAGTRARK+LQELK+LAQ+LRV IQDTK
Sbjct:    1 MEKYSELARCVENIERDASKFFVNGNKAAGTRARKHLQELKQLAQDLRVLIQDTK 55          
BLAST of Ggra3374.t1 vs. uniprot
Match: A0A2D8CFC1 (Histone H1 n=2 Tax=Balneolaceae TaxID=1813606 RepID=A0A2D8CFC1_9BACT)

HSP 1 Score: 68.2 bits (165), Expect = 1.080e-13
Identity = 32/55 (58.18%), Postives = 46/55 (83.64%), Query Frame = 0
Query:   13 MEKLQQLKEVMDAVSKDSTKFFEKGNKAAGTRARKNLQELKKLAQELRVAIQDTK 67
            M +++++K ++D  +++  KF+EKGNKAAGTRARK LQELKKLAQE+R+ IQ+ K
Sbjct:    1 MSRVEEIKNLLDETTEEMEKFYEKGNKAAGTRARKGLQELKKLAQEIRLEIQEIK 55          
BLAST of Ggra3374.t1 vs. uniprot
Match: A0A2A2G865 (Histone H1 n=1 Tax=Aliifodinibius sp. WN023 TaxID=2032627 RepID=A0A2A2G865_9BACT)

HSP 1 Score: 67.4 bits (163), Expect = 2.180e-13
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 0
Query:   13 MEKLQQLKEVMDAVSKDSTKFFEKGNKAAGTRARKNLQELKKLAQELRVAIQDTKAN 69
            M + +++  ++  +  D TKF+EKGNKAAGTRARK LQ LKKLAQE+R+ IQD K N
Sbjct:    1 MSRFEEITNIITGIEDDMTKFYEKGNKAAGTRARKGLQGLKKLAQEVRLEIQDIKNN 57          
The following BLAST results are available for this feature:
BLAST of Ggra3374.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IMW95.450e-3296.88Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6NJJ22.110e-1776.36Uncharacterized protein (Fragment) n=1 Tax=Porphyr... [more]
A0A5J4Z6U92.200e-1666.67Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A1X6NTL18.790e-1567.27Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1M5DWH21.320e-1461.40Histone H1-like protein Hc1 n=5 Tax=Aliifodinibius... [more]
A0A6A8Q4R03.780e-1459.65Histone H1 n=1 Tax=Balneolaceae bacterium TaxID=20... [more]
A0A6M1SSM95.360e-1461.82Histone H1 n=1 Tax=Balneolaceae bacterium YR4-1 Ta... [more]
A0A2V3IU428.270e-1463.64Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2D8CFC11.080e-1358.18Histone H1 n=2 Tax=Balneolaceae TaxID=1813606 RepI... [more]
A0A2A2G8652.180e-1357.89Histone H1 n=1 Tax=Aliifodinibius sp. WN023 TaxID=... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 42..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:158814..159401 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3374.t1Ggra3374.t1Gracilaria gracilis GNS1m malemRNAtig00000189_pilon 158814..159401 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3374.t1 ID=Ggra3374.t1|Name=Ggra3374.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=77bp
LSDVYRCDLLPCMEKLQQLKEVMDAVSKDSTKFFEKGNKAAGTRARKNLQ
ELKKLAQELRVAIQDTKANMANPVAE*
back to top