Ggra3374.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3374.t1
Unique NameGgra3374.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length77
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:158814..159401 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121930.AQXG01000001_gene1222
PFAMsHc1
Max annot lvl976|Bacteroidetes
Evalue2.19e-13
EggNOG OGs2BVK8@1|root,32Y0S@2|Bacteria,4NUUA@976|Bacteroidetes,1ITXR@117747|Sphingobacteriia
Descriptionhistone H1-like protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3374Ggra3374Gracilaria gracilis GNS1m malegenetig00000189_pilon 158814..159401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3374.t1Ggra3374.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 158814..159401 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3374.t1.start1Ggra3374.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 158814..158816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3374.t1.CDS1Ggra3374.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 158814..158820 +
Ggra3374.t1.CDS2Ggra3374.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000189_pilon 159029..159057 +
Ggra3374.t1.CDS3Ggra3374.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000189_pilon 159207..159401 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3374.t1.exon1Ggra3374.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 158814..158820 +
Ggra3374.t1.exon2Ggra3374.t1.exon2Gracilaria gracilis GNS1m maleexontig00000189_pilon 159029..159057 +
Ggra3374.t1.exon3Ggra3374.t1.exon3Gracilaria gracilis GNS1m maleexontig00000189_pilon 159207..159401 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3374.t1.intron1Ggra3374.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000189_pilon 158821..159028 +
Ggra3374.t1.intron2Ggra3374.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000189_pilon 159058..159206 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3374.t1.stop1Ggra3374.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 159399..159401 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3374.t1 ID=Ggra3374.t1|Name=Ggra3374.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=77bp
LSDVYRCDLLPCMEKLQQLKEVMDAVSKDSTKFFEKGNKAAGTRARKNLQ
ELKKLAQELRVAIQDTKANMANPVAE*
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spliced messenger RNA

>Ggra3374.t1 ID=Ggra3374.t1|Name=Ggra3374.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=231bp|location=Sequence derived from alignment at tig00000189_pilon:158814..159401+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
TTGTCCGACGTTTACCGCTGTGACTTGCTTCCCTGCATGGAAAAGCTGCA
ACAGCTCAAGGAGGTCATGGACGCCGTGTCCAAGGATAGCACCAAGTTCT
TCGAGAAGGGGAACAAGGCTGCTGGCACCCGCGCCCGCAAAAACCTGCAG
GAGCTCAAGAAGCTTGCGCAAGAGCTGCGTGTCGCAATACAGGACACCAA
GGCCAACATGGCCAACCCTGTCGCTGAGTGA
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protein sequence of Ggra3374.t1

>Ggra3374.t1 ID=Ggra3374.t1|Name=Ggra3374.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=77bp
LSDVYRCDLLPCMEKLQQLKEVMDAVSKDSTKFFEKGNKAAGTRARKNLQ
ELKKLAQELRVAIQDTKANMANPVAE*
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mRNA from alignment at tig00000189_pilon:158814..159401+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3374.t1 ID=Ggra3374.t1|Name=Ggra3374.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=588bp|location=Sequence derived from alignment at tig00000189_pilon:158814..159401+ (Gracilaria gracilis GNS1m male)
TTGTCCGGTAAGTTTGCAATAAAAATGCGCGCGTGCGCTACGCGCGTGCG
CCGCCTCCCGCGGCCGCGTCTGCGCGCAGCGCCGCCGCTTGCGCTTTGCT
CGCGCCGCTGCCCGCCCACCCGACTGACCCGCTGACCCGCTGTGTGTGTG
TGTGTCCGCGCGccctcctcccccccccttcccccctcccccctccaccc
ccccGTCATGCACAGACGTTTACCGCTGTGACTTGCTTCCCTGCGTTTGT
TGTGCTCGCCATCGCCGTCGTCGCTGCGCCTCGCTCACGCTAAGgtctgt
ctgtcggtctgtctgtcGGCGCCTCGCTCCACCCCCGTGCTATACCCGCC
CACGCCGCTTCGCACGCGCGCTCTTCCCACCTCCCAACCCCAGATGGAAA
AGCTGCAACAGCTCAAGGAGGTCATGGACGCCGTGTCCAAGGATAGCACC
AAGTTCTTCGAGAAGGGGAACAAGGCTGCTGGCACCCGCGCCCGCAAAAA
CCTGCAGGAGCTCAAGAAGCTTGCGCAAGAGCTGCGTGTCGCAATACAGG
ACACCAAGGCCAACATGGCCAACCCTGTCGCTGAGTGA
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Coding sequence (CDS) from alignment at tig00000189_pilon:158814..159401+

>Ggra3374.t1 ID=Ggra3374.t1|Name=Ggra3374.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=231bp|location=Sequence derived from alignment at tig00000189_pilon:158814..159401+ (Gracilaria gracilis GNS1m male)
TTGTCCGACGTTTACCGCTGTGACTTGCTTCCCTGCATGGAAAAGCTGCA
ACAGCTCAAGGAGGTCATGGACGCCGTGTCCAAGGATAGCACCAAGTTCT
TCGAGAAGGGGAACAAGGCTGCTGGCACCCGCGCCCGCAAAAACCTGCAG
GAGCTCAAGAAGCTTGCGCAAGAGCTGCGTGTCGCAATACAGGACACCAA
GGCCAACATGGCCAACCCTGTCGCTGAGTGA
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