Ggra4936.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4936.t1
Unique NameGgra4936.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length426
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000157_piloncontigtig00000157_pilon:229047..230324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FU28
PFAMsKringle,LPMO_10,WSC
Max annot lvl2759|Eukaryota
KEGG koko:K01315
KEGG Pathwayko04080,ko04610,ko05150,ko05164,map04080,map04610,map05150,map05164
Evalue4.98e-16
EggNOG OGsKOG4157@1|root,KOG4157@2759|Eukaryota
EC3.4.21.7
Descriptionprotein xylosyltransferase activity
COG categoryU
BRITEko00000,ko00001,ko01000,ko01002,ko04147,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4936Ggra4936Gracilaria gracilis GNS1m malegenetig00000157_pilon 229047..230324 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4936.t1.stop1Ggra4936.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000157_pilon 229047..229049 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4936.t1.CDS1Ggra4936.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000157_pilon 229047..230324 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4936.t1.exon1Ggra4936.t1.exon1Gracilaria gracilis GNS1m maleexontig00000157_pilon 229047..230324 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4936.t1.start1Ggra4936.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000157_pilon 230322..230324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4936.t1Ggra4936.t1Gracilaria gracilis GNS1m malepolypeptidetig00000157_pilon 229047..230324 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4936.t1 ID=Ggra4936.t1|Name=Ggra4936.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=426bp
MSVIILTFCLILARANAHGFVSDPRQRGALNIQNHITQPIDDKAPIDYEC
HFPAGDKSTVPGSGHRSVKDAAGHNWTPYEPLDPFFKWRCGVCGDHLFGA
QEHLRGGKYFWDAKRVRTYEQGSVVFFESEIITHHNGYYEFYVCDIDKCG
DDISQRCFHEGHCTKLIRARGPCDSGNHPGCGPIDSNYPGRWYLPCITHE
PAMVGGKSRTMAYVLPPWLVCEHCVIQWYWTAANTCNPPGVADYFTGPDA
PRWKPCTGQGGAVGGWTSSKGACGGADFPEEYWQCSDVRIVPRGAPLDGH
GGSGAHLAPAQHERPHHEPHHHEQHHEPHHGSQANNGAPPHHVSPPPAPA
PAPASAPAPAWASLHGGSSASTGSGVFVGARSKQDGDRHAPEATAAPHNW
EQSPASDDGASAADDDVDTAAALGF*
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spliced messenger RNA

>Ggra4936.t1 ID=Ggra4936.t1|Name=Ggra4936.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00000157_pilon:229047..230324- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGTGATAATTCTGACATTCTGCTTGATTTTGGCGCGGGCAAACGC
TCACGGCTTCGTGAGTGATCCGCGCCAAAGAGGAGCGCTAAACATACAAA
ACCATATCACACAACCAATCGACGACAAAGCGCCAATTGACTACGAGTGT
CATTTTCCAGCAGGCGACAAGTCAACTGTACCAGGCTCTGGGCATCGGTC
GGTCAAGGATGCTGCTGGGCATAATTGGACTCCCTACGAACCGTTGGACC
CGTTCTTCAAATGGCGATGCGGTGTTTGTGGTGACCATTTGTTTGGTGCT
CAAGAACATCTACGCGGCGGAAAGTATTTTTGGGATGCCAAGCGAGTGCG
CACTTATGAACAGGGAAGCGTGGTGTTCTTCGAGTCAGAGATTATTACGC
ATCATAACGGATACTACGAATTCTATGTCTGCGACATTGACAAATGCGGC
GATGACATTTCACAGAGATGCTTCCATGAAGGACACTGCACCAAGCTGAT
ACGCGCAAGAGGTCCATGCGATTCTGGTAACCACCCTGGGTGCGGCCCAA
TCGACAGCAACTACCCAGGTCGGTGGTATCTACCATGTATAACTCACGAA
CCGGCAATGGTGGGAGGCAAATCAAGAACGATGGCGTACGTGCTCCCTCC
ATGGCTGGTTTGCGAACATTGCGTGATTCAATGGTACTGGACAGCTGCCA
ATACATGCAACCCACCTGGAGTGGCGGATTACTTTACTGGCCCTGACGCG
CCGAGATGGAAACCGTGCACTGGACAGGGCGGGGCTGTTGGTGGCTGGAC
GAGTTCAAAGGGTGCTTGCGGCGGAGCGGACTTTCCGGAGGAATACTGGC
AATGCTCGGACGTAAGGATCGTTCCACGTGGGGCGCCGCTTGATGGGCAT
GGCGGAAGCGGAGCGCATCTTGCTCCTGCTCAGCACGAGCGGCCGCATCA
CGAACCGCATCATCATGAACAGCATCATGAGCCTCACCACGGGAGTCAAG
CGAATAACGGAGCGCCTCCCCATCATGTCAGCCCGCCACCGGCGCCCGCG
CCCGCTCCCGCCTCAGCGCCTGCACCGGCTTGGGCATCGCTGCACGGAGG
GTCATCGGCGAGCACGGGCAGCGGCGTCTTCGTGGGCGCACGCAGCAAGC
AAGACGGCGATCGGCACGCGCCGGAGGCGACGGCGGCGCCCCACAATTGG
GAGCAATCGCCCGCATCGGACGACGGCGCGTCCGCAGCAGATGACGATGT
GGATACGGCGGCTGCGCTCGGCTTCTAG
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protein sequence of Ggra4936.t1

>Ggra4936.t1 ID=Ggra4936.t1|Name=Ggra4936.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=426bp
MSVIILTFCLILARANAHGFVSDPRQRGALNIQNHITQPIDDKAPIDYEC
HFPAGDKSTVPGSGHRSVKDAAGHNWTPYEPLDPFFKWRCGVCGDHLFGA
QEHLRGGKYFWDAKRVRTYEQGSVVFFESEIITHHNGYYEFYVCDIDKCG
DDISQRCFHEGHCTKLIRARGPCDSGNHPGCGPIDSNYPGRWYLPCITHE
PAMVGGKSRTMAYVLPPWLVCEHCVIQWYWTAANTCNPPGVADYFTGPDA
PRWKPCTGQGGAVGGWTSSKGACGGADFPEEYWQCSDVRIVPRGAPLDGH
GGSGAHLAPAQHERPHHEPHHHEQHHEPHHGSQANNGAPPHHVSPPPAPA
PAPASAPAPAWASLHGGSSASTGSGVFVGARSKQDGDRHAPEATAAPHNW
EQSPASDDGASAADDDVDTAAALGF*
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mRNA from alignment at tig00000157_pilon:229047..230324-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4936.t1 ID=Ggra4936.t1|Name=Ggra4936.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1278bp|location=Sequence derived from alignment at tig00000157_pilon:229047..230324- (Gracilaria gracilis GNS1m male)
ATGTCGGTGATAATTCTGACATTCTGCTTGATTTTGGCGCGGGCAAACGC
TCACGGCTTCGTGAGTGATCCGCGCCAAAGAGGAGCGCTAAACATACAAA
ACCATATCACACAACCAATCGACGACAAAGCGCCAATTGACTACGAGTGT
CATTTTCCAGCAGGCGACAAGTCAACTGTACCAGGCTCTGGGCATCGGTC
GGTCAAGGATGCTGCTGGGCATAATTGGACTCCCTACGAACCGTTGGACC
CGTTCTTCAAATGGCGATGCGGTGTTTGTGGTGACCATTTGTTTGGTGCT
CAAGAACATCTACGCGGCGGAAAGTATTTTTGGGATGCCAAGCGAGTGCG
CACTTATGAACAGGGAAGCGTGGTGTTCTTCGAGTCAGAGATTATTACGC
ATCATAACGGATACTACGAATTCTATGTCTGCGACATTGACAAATGCGGC
GATGACATTTCACAGAGATGCTTCCATGAAGGACACTGCACCAAGCTGAT
ACGCGCAAGAGGTCCATGCGATTCTGGTAACCACCCTGGGTGCGGCCCAA
TCGACAGCAACTACCCAGGTCGGTGGTATCTACCATGTATAACTCACGAA
CCGGCAATGGTGGGAGGCAAATCAAGAACGATGGCGTACGTGCTCCCTCC
ATGGCTGGTTTGCGAACATTGCGTGATTCAATGGTACTGGACAGCTGCCA
ATACATGCAACCCACCTGGAGTGGCGGATTACTTTACTGGCCCTGACGCG
CCGAGATGGAAACCGTGCACTGGACAGGGCGGGGCTGTTGGTGGCTGGAC
GAGTTCAAAGGGTGCTTGCGGCGGAGCGGACTTTCCGGAGGAATACTGGC
AATGCTCGGACGTAAGGATCGTTCCACGTGGGGCGCCGCTTGATGGGCAT
GGCGGAAGCGGAGCGCATCTTGCTCCTGCTCAGCACGAGCGGCCGCATCA
CGAACCGCATCATCATGAACAGCATCATGAGCCTCACCACGGGAGTCAAG
CGAATAACGGAGCGCCTCCCCATCATGTCAGCCCGCCACCGGCGCCCGCG
CCCGCTCCCGCCTCAGCGCCTGCACCGGCTTGGGCATCGCTGCACGGAGG
GTCATCGGCGAGCACGGGCAGCGGCGTCTTCGTGGGCGCACGCAGCAAGC
AAGACGGCGATCGGCACGCGCCGGAGGCGACGGCGGCGCCCCACAATTGG
GAGCAATCGCCCGCATCGGACGACGGCGCGTCCGCAGCAGATGACGATGT
GGATACGGCGGCTGCGCTCGGCTTCTAG
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Coding sequence (CDS) from alignment at tig00000157_pilon:229047..230324-

>Ggra4936.t1 ID=Ggra4936.t1|Name=Ggra4936.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1278bp|location=Sequence derived from alignment at tig00000157_pilon:229047..230324- (Gracilaria gracilis GNS1m male)
ATGTCGGTGATAATTCTGACATTCTGCTTGATTTTGGCGCGGGCAAACGC
TCACGGCTTCGTGAGTGATCCGCGCCAAAGAGGAGCGCTAAACATACAAA
ACCATATCACACAACCAATCGACGACAAAGCGCCAATTGACTACGAGTGT
CATTTTCCAGCAGGCGACAAGTCAACTGTACCAGGCTCTGGGCATCGGTC
GGTCAAGGATGCTGCTGGGCATAATTGGACTCCCTACGAACCGTTGGACC
CGTTCTTCAAATGGCGATGCGGTGTTTGTGGTGACCATTTGTTTGGTGCT
CAAGAACATCTACGCGGCGGAAAGTATTTTTGGGATGCCAAGCGAGTGCG
CACTTATGAACAGGGAAGCGTGGTGTTCTTCGAGTCAGAGATTATTACGC
ATCATAACGGATACTACGAATTCTATGTCTGCGACATTGACAAATGCGGC
GATGACATTTCACAGAGATGCTTCCATGAAGGACACTGCACCAAGCTGAT
ACGCGCAAGAGGTCCATGCGATTCTGGTAACCACCCTGGGTGCGGCCCAA
TCGACAGCAACTACCCAGGTCGGTGGTATCTACCATGTATAACTCACGAA
CCGGCAATGGTGGGAGGCAAATCAAGAACGATGGCGTACGTGCTCCCTCC
ATGGCTGGTTTGCGAACATTGCGTGATTCAATGGTACTGGACAGCTGCCA
ATACATGCAACCCACCTGGAGTGGCGGATTACTTTACTGGCCCTGACGCG
CCGAGATGGAAACCGTGCACTGGACAGGGCGGGGCTGTTGGTGGCTGGAC
GAGTTCAAAGGGTGCTTGCGGCGGAGCGGACTTTCCGGAGGAATACTGGC
AATGCTCGGACGTAAGGATCGTTCCACGTGGGGCGCCGCTTGATGGGCAT
GGCGGAAGCGGAGCGCATCTTGCTCCTGCTCAGCACGAGCGGCCGCATCA
CGAACCGCATCATCATGAACAGCATCATGAGCCTCACCACGGGAGTCAAG
CGAATAACGGAGCGCCTCCCCATCATGTCAGCCCGCCACCGGCGCCCGCG
CCCGCTCCCGCCTCAGCGCCTGCACCGGCTTGGGCATCGCTGCACGGAGG
GTCATCGGCGAGCACGGGCAGCGGCGTCTTCGTGGGCGCACGCAGCAAGC
AAGACGGCGATCGGCACGCGCCGGAGGCGACGGCGGCGCCCCACAATTGG
GAGCAATCGCCCGCATCGGACGACGGCGCGTCCGCAGCAGATGACGATGT
GGATACGGCGGCTGCGCTCGGCTTCTAG
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