Ggra4941.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4941.t1
Unique NameGgra4941.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length234
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000157_piloncontigtig00000157_pilon:329853..331016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4941Ggra4941Gracilaria gracilis GNS1m malegenetig00000157_pilon 329853..331016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4941.t1Ggra4941.t1Gracilaria gracilis GNS1m malepolypeptidetig00000157_pilon 329853..331016 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4941.t1.start1Ggra4941.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000157_pilon 329853..329855 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4941.t1.CDS1Ggra4941.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000157_pilon 329853..330445 +
Ggra4941.t1.CDS2Ggra4941.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000157_pilon 330908..331016 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4941.t1.exon1Ggra4941.t1.exon1Gracilaria gracilis GNS1m maleexontig00000157_pilon 329853..330445 +
Ggra4941.t1.exon2Ggra4941.t1.exon2Gracilaria gracilis GNS1m maleexontig00000157_pilon 330908..331016 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4941.t1.intron1Ggra4941.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000157_pilon 330446..330907 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4941.t1.stop1Ggra4941.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000157_pilon 331014..331016 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4941.t1 ID=Ggra4941.t1|Name=Ggra4941.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=234bp
MQPLNFASPTLLRRAPARDARAQPRLSARRCAATPCAALRSPAAALHYVL
QRARDDTQRLLRHAPKAAATLALIGALMLPADASLAASGGRVGGSSFRSA
PRSAPAPRSGYSRGYSGGYSGGYSGGYSGGYGYGGGLFGLPGGVYMSPMI
LPFGGFGLGGFGSLLLFGAAAAFVADAARTRRDDAELQEASNPATTTVQG
ALQAAEVLWAPQRAGDALTEAQLLRDHPRLTRL*
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spliced messenger RNA

>Ggra4941.t1 ID=Ggra4941.t1|Name=Ggra4941.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp|location=Sequence derived from alignment at tig00000157_pilon:329853..331016+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCGCTAAACTTTGCGAGCCCGACGTTGCTACGGCGCGCGCCAGC
GCGCGACGCGCGCGCGCAGCCGCGACTGTCTGCGCGGCGCTGCGCCGCCA
CGCCGTGCGCCGCGCTGCGCTCGCCAGCAGCGGCGCTGCACTACGTGCTG
CAGCGCGCGCGCGACGACACGCAGCGGCTGCTGCGCCACGCGCCCAAGGC
GGCGGCGACGCTGGCGCTGATCGGCGCGCTGATGCTGCCGGCCGACGCGT
CGCTGGCGGCGTCGGGCGGGCGCGTGGGCGGCTCGTCGTTCCGCTCCGCG
CCGCGCTCTGCGCCCGCGCCGCGCAGCGGTTACAGCCGCGGCTACAGCGG
CGGCTACAGCGGCGGCTACAGCGGCGGCTACAGCGGCGGCTACGGCTACG
GCGGCGGGCTGTTTGGGCTGCCCGGCGGCGTGTACATGAGCCCGATGATC
CTGCCGTTCGGCGGGTTTGGGCTGGgcggcttcggctcgctgctgctgtt
cggcgcggcggcggcATTTGTGGCGGACGCGGCGCGCACGCGCCGCGACG
ACGCCGAGCTGCAGGAGGCGAGCAACCCCGcgacgacgacggtCCAGGGC
GCGCTGCAGGCGGCCGAGGTGCTGTGGGCGCCGCAGCGCGCCGGCGACGC
GCTCACCGAGGCGCAGCTGCTGCGCGACCACCCGCGCCTCACGCGGCTGT
GA
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protein sequence of Ggra4941.t1

>Ggra4941.t1 ID=Ggra4941.t1|Name=Ggra4941.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=234bp
MQPLNFASPTLLRRAPARDARAQPRLSARRCAATPCAALRSPAAALHYVL
QRARDDTQRLLRHAPKAAATLALIGALMLPADASLAASGGRVGGSSFRSA
PRSAPAPRSGYSRGYSGGYSGGYSGGYSGGYGYGGGLFGLPGGVYMSPMI
LPFGGFGLGGFGSLLLFGAAAAFVADAARTRRDDAELQEASNPATTTVQG
ALQAAEVLWAPQRAGDALTEAQLLRDHPRLTRL*
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mRNA from alignment at tig00000157_pilon:329853..331016+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4941.t1 ID=Ggra4941.t1|Name=Ggra4941.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00000157_pilon:329853..331016+ (Gracilaria gracilis GNS1m male)
ATGCAGCCGCTAAACTTTGCGAGCCCGACGTTGCTACGGCGCGCGCCAGC
GCGCGACGCGCGCGCGCAGCCGCGACTGTCTGCGCGGCGCTGCGCCGCCA
CGCCGTGCGCCGCGCTGCGCTCGCCAGCAGCGGCGCTGCACTACGTGCTG
CAGCGCGCGCGCGACGACACGCAGCGGCTGCTGCGCCACGCGCCCAAGGC
GGCGGCGACGCTGGCGCTGATCGGCGCGCTGATGCTGCCGGCCGACGCGT
CGCTGGCGGCGTCGGGCGGGCGCGTGGGCGGCTCGTCGTTCCGCTCCGCG
CCGCGCTCTGCGCCCGCGCCGCGCAGCGGTTACAGCCGCGGCTACAGCGG
CGGCTACAGCGGCGGCTACAGCGGCGGCTACAGCGGCGGCTACGGCTACG
GCGGCGGGCTGTTTGGGCTGCCCGGCGGCGTGTACATGAGCCCGATGATC
CTGCCGTTCGGCGGGTTTGGGCTGGgcggcttcggctcgctgctgctgtt
cggcgcggcggcggcATTTGTGGCGGACGCGGCGCGCACGCGCCGCGACG
ACGCCGAGCTGCAGGAGGCGAGCAACCCCGcgacgacgacggtgtgcgtg
aaggtggcgctgctggcgtcgggcagccaggtgcagggcgcgctgggcgc
gctgacgcgcggcgcggacacgcgcagcgtgagcggactcaaggcggtgg
tggacgaggcggccgtgacgctgctgcgcgcggcggagtactgggtgttt
gcggacgtgacggcgcacacggcggcgctgcgcgaggcggaggcgcgctt
tgcgcgcgccgtcgtggaggagcgcgccaagctggacggcgagacgctga
gcaacgcgggcgggctgctgcgcgacgacgacgacgcggcggcggcggag
gcggagggggccgacgccgacgcgcagctgttcgtggtgagcgtgctggt
ggcggccacgggcgacgcgctgcgcgacgtgcgcgccgcggcggcgggcg
gcggcggcggcgctgaggacgtgcgcgccgcgcTCACGGCGGTGGGCGCC
GTGAGCCAGGGCGCGCTGCAGGCGGCCGAGGTGCTGTGGGCGCCGCAGCG
CGCCGGCGACGCGCTCACCGAGGCGCAGCTGCTGCGCGACCACCCGCGCC
TCACGCGGCTGTGA
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Coding sequence (CDS) from alignment at tig00000157_pilon:329853..331016+

>Ggra4941.t1 ID=Ggra4941.t1|Name=Ggra4941.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=702bp|location=Sequence derived from alignment at tig00000157_pilon:329853..331016+ (Gracilaria gracilis GNS1m male)
ATGCAGCCGCTAAACTTTGCGAGCCCGACGTTGCTACGGCGCGCGCCAGC
GCGCGACGCGCGCGCGCAGCCGCGACTGTCTGCGCGGCGCTGCGCCGCCA
CGCCGTGCGCCGCGCTGCGCTCGCCAGCAGCGGCGCTGCACTACGTGCTG
CAGCGCGCGCGCGACGACACGCAGCGGCTGCTGCGCCACGCGCCCAAGGC
GGCGGCGACGCTGGCGCTGATCGGCGCGCTGATGCTGCCGGCCGACGCGT
CGCTGGCGGCGTCGGGCGGGCGCGTGGGCGGCTCGTCGTTCCGCTCCGCG
CCGCGCTCTGCGCCCGCGCCGCGCAGCGGTTACAGCCGCGGCTACAGCGG
CGGCTACAGCGGCGGCTACAGCGGCGGCTACAGCGGCGGCTACGGCTACG
GCGGCGGGCTGTTTGGGCTGCCCGGCGGCGTGTACATGAGCCCGATGATC
CTGCCGTTCGGCGGGTTTGGGCTGGgcggcttcggctcgctgctgctgtt
cggcgcggcggcggcATTTGTGGCGGACGCGGCGCGCACGCGCCGCGACG
ACGCCGAGCTGCAGGAGGCGAGCAACCCCGcgacgacgacggtCCAGGGC
GCGCTGCAGGCGGCCGAGGTGCTGTGGGCGCCGCAGCGCGCCGGCGACGC
GCTCACCGAGGCGCAGCTGCTGCGCGACCACCCGCGCCTCACGCGGCTGT
GA
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