Ggra4941.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4941.t1
Unique NameGgra4941.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length234
Homology
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BLAST of Ggra4941.t1 vs. uniprot
Match: A0A2V3IRM7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRM7_9FLOR)

HSP 1 Score: 119 bits (299), Expect = 2.440e-28
Identity = 88/153 (57.52%), Postives = 104/153 (67.97%), Query Frame = 0 
Query:   49 VLQRARDDTQRLLRHAPKAAATLALIGALMLPADASLAASGGRVGGSSFRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGLFGLPGGVYMSPMILPFGGFGLGGFGSLLLFGAAAAFVADAARTRRDDAELQEASNPAT--TTVQ 199
            VLQR RDDT  + +HA KA A +ALI AL+LP D +LAASGGR+GGSSFR                 XXXXXXXXXXXX         LFG PGGVY SP+ILPFGGFG GG GSL+LF  AAAFVAD  RT+ +++++QEA +P T  TTV+
Sbjct:   54 VLQRVRDDTLIVAKHASKAVAAVALIAALVLPPDMALAASGGRIGGSSFRSSPVPSRVAPAPRYGGGXXXXXXXXXXXX---------LFGAPGGVYFSPIILPFGGFGFGGIGSLILFATAAAFVADTLRTKSEESDIQEAVDPNTSLTTVK 197
The following BLAST results are available for this feature:
BLAST of Ggra4941.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IRM72.440e-2857.52Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010903Protein of unknown function DUF1517PFAMPF07466DUF1517coord: 185..233
e-value: 1.7E-8
score: 34.8
NoneNo IPR availablePANTHERPTHR33975:SF2MYELIN-ASSOCIATED OLIGODENDROCYTE BASIC PROTEINcoord: 185..233
NoneNo IPR availablePANTHERPTHR33975:SF2MYELIN-ASSOCIATED OLIGODENDROCYTE BASIC PROTEINcoord: 56..193
NoneNo IPR availablePANTHERPTHR33975MYELIN-ASSOCIATED OLIGODENDROCYTE BASIC PROTEINcoord: 56..193
NoneNo IPR availablePANTHERPTHR33975MYELIN-ASSOCIATED OLIGODENDROCYTE BASIC PROTEINcoord: 185..233
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 150..175
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 176..233
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 88..149
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..66
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 67..87
NoneNo IPR availableTMHMMTMhelixcoord: 153..175

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000157_piloncontigtig00000157_pilon:329853..331016 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4941.t1Ggra4941.t1Gracilaria gracilis GNS1m malemRNAtig00000157_pilon 329853..331016 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4941.t1 ID=Ggra4941.t1|Name=Ggra4941.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=234bp
MQPLNFASPTLLRRAPARDARAQPRLSARRCAATPCAALRSPAAALHYVL
QRARDDTQRLLRHAPKAAATLALIGALMLPADASLAASGGRVGGSSFRSA
PRSAPAPRSGYSRGYSGGYSGGYSGGYSGGYGYGGGLFGLPGGVYMSPMI
LPFGGFGLGGFGSLLLFGAAAAFVADAARTRRDDAELQEASNPATTTVQG
ALQAAEVLWAPQRAGDALTEAQLLRDHPRLTRL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010903DUF1517