Ggra8574.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8574.t1
Unique NameGgra8574.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length183
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000116_piloncontigtig00000116_pilon:57719..58267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5786.XP_003289763.1
PFAMsMito_carr
Max annot lvl554915|Amoebozoa
KEGG koko:K15105
KEGG TC2.A.29.14.1,2.A.29.14.2,2.A.29.14.4
GOsGO:0003333,GO:0003674,GO:0005215,GO:0005283,GO:0005310,GO:0005313,GO:0005314,GO:0005326,GO:0005328,GO:0005342,GO:0005343,GO:0005416,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006820,GO:0006835,GO:0006836,GO:0006839,GO:0006855,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015077,GO:0015081,GO:0015171,GO:0015172,GO:0015179,GO:0015238,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015370,GO:0015501,GO:0015672,GO:0015711,GO:0015800,GO:0015807,GO:0015813,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0017153,GO:0019866,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0035725,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0098655,GO:0098656,GO:0098660,GO:0098662,GO:1902475,GO:1903825,GO:1905039
Evalue1.1e-21
EggNOG OGsKOG0751@1|root,KOG0751@2759|Eukaryota,3XATR@554915|Amoebozoa
DescriptionMitochondrial carrier protein
COG categoryC
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8574Ggra8574Gracilaria gracilis GNS1m malegenetig00000116_pilon 57719..58267 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8574.t1.stop1Ggra8574.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000116_pilon 57719..57721 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8574.t1.CDS1Ggra8574.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000116_pilon 57719..58267 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8574.t1.exon1Ggra8574.t1.exon1Gracilaria gracilis GNS1m maleexontig00000116_pilon 57719..58267 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8574.t1.start1Ggra8574.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000116_pilon 58265..58267 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8574.t1Ggra8574.t1Gracilaria gracilis GNS1m malepolypeptidetig00000116_pilon 57719..58267 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8574.t1 ID=Ggra8574.t1|Name=Ggra8574.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=183bp
MLSRPDGSIFMASAMLAGVGAGLTQVIATKPMEVLMINMQTSTLSMRRLI
YKLRISGLYNNVSAVLLRDIPFSMVLFPMKTYLRHFFTKEDGILATPNVS
LAVILAGTTAAAPSKPPDVIETRLQSISATKRFVWPTATTALSSAPHTIH
PGAPTSQSAHAMSSSAASPNSHLTIVQCARCI*
back to top

spliced messenger RNA

>Ggra8574.t1 ID=Ggra8574.t1|Name=Ggra8574.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=549bp|location=Sequence derived from alignment at tig00000116_pilon:57719..58267- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTCGCGCCCCGACGGCTCCATCTTCATGGCCAGTGCCATGCTGGC
CGGCGTGGGCGCCGGCCTCACGCAGGTCATTGCCACCAAACCAATGGAGG
TGTTGATGATCAACATGCAGACCTCCACACTTTCCATGCGCCGCCTCATC
TACAAGCTGCGCATCAGCGGCTTGTACAACAACGTGTCGGCCGTTTTGCT
GCGCGACATCCCGTTCAGCATGGTCTTGTTCCCCATGAAGACCTACCTGC
GTCACTTCTTCACCAAAGAGGACGGCATTTTGGCGACGCCCAACGTCTCG
CTGGCCGTCATTCTGGCGGGCACCACCGCAGCCGCCCCCTCTAAACCGCC
TGACGTCATCGAGACCCGCCTGCAGTCAATCAGTGCAACCAAGCGTTTTG
TGTGGCCCACCGCCACCACCGCGTTGTCGTCCGCCCCCCACACCATCCAC
CCCGGCGCGCCCACGTCGCAATCGGCGCACGCCATGTCGTCTTCCGCCGC
TTCGCCCAACTCGCACCTCACCATTGTACAATGCGCCAGGTGCATCTAA
back to top

protein sequence of Ggra8574.t1

>Ggra8574.t1 ID=Ggra8574.t1|Name=Ggra8574.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=183bp
MLSRPDGSIFMASAMLAGVGAGLTQVIATKPMEVLMINMQTSTLSMRRLI
YKLRISGLYNNVSAVLLRDIPFSMVLFPMKTYLRHFFTKEDGILATPNVS
LAVILAGTTAAAPSKPPDVIETRLQSISATKRFVWPTATTALSSAPHTIH
PGAPTSQSAHAMSSSAASPNSHLTIVQCARCI*
back to top

mRNA from alignment at tig00000116_pilon:57719..58267-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8574.t1 ID=Ggra8574.t1|Name=Ggra8574.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=549bp|location=Sequence derived from alignment at tig00000116_pilon:57719..58267- (Gracilaria gracilis GNS1m male)
ATGCTTTCGCGCCCCGACGGCTCCATCTTCATGGCCAGTGCCATGCTGGC
CGGCGTGGGCGCCGGCCTCACGCAGGTCATTGCCACCAAACCAATGGAGG
TGTTGATGATCAACATGCAGACCTCCACACTTTCCATGCGCCGCCTCATC
TACAAGCTGCGCATCAGCGGCTTGTACAACAACGTGTCGGCCGTTTTGCT
GCGCGACATCCCGTTCAGCATGGTCTTGTTCCCCATGAAGACCTACCTGC
GTCACTTCTTCACCAAAGAGGACGGCATTTTGGCGACGCCCAACGTCTCG
CTGGCCGTCATTCTGGCGGGCACCACCGCAGCCGCCCCCTCTAAACCGCC
TGACGTCATCGAGACCCGCCTGCAGTCAATCAGTGCAACCAAGCGTTTTG
TGTGGCCCACCGCCACCACCGCGTTGTCGTCCGCCCCCCACACCATCCAC
CCCGGCGCGCCCACGTCGCAATCGGCGCACGCCATGTCGTCTTCCGCCGC
TTCGCCCAACTCGCACCTCACCATTGTACAATGCGCCAGGTGCATCTAA
back to top

Coding sequence (CDS) from alignment at tig00000116_pilon:57719..58267-

>Ggra8574.t1 ID=Ggra8574.t1|Name=Ggra8574.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=549bp|location=Sequence derived from alignment at tig00000116_pilon:57719..58267- (Gracilaria gracilis GNS1m male)
ATGCTTTCGCGCCCCGACGGCTCCATCTTCATGGCCAGTGCCATGCTGGC
CGGCGTGGGCGCCGGCCTCACGCAGGTCATTGCCACCAAACCAATGGAGG
TGTTGATGATCAACATGCAGACCTCCACACTTTCCATGCGCCGCCTCATC
TACAAGCTGCGCATCAGCGGCTTGTACAACAACGTGTCGGCCGTTTTGCT
GCGCGACATCCCGTTCAGCATGGTCTTGTTCCCCATGAAGACCTACCTGC
GTCACTTCTTCACCAAAGAGGACGGCATTTTGGCGACGCCCAACGTCTCG
CTGGCCGTCATTCTGGCGGGCACCACCGCAGCCGCCCCCTCTAAACCGCC
TGACGTCATCGAGACCCGCCTGCAGTCAATCAGTGCAACCAAGCGTTTTG
TGTGGCCCACCGCCACCACCGCGTTGTCGTCCGCCCCCCACACCATCCAC
CCCGGCGCGCCCACGTCGCAATCGGCGCACGCCATGTCGTCTTCCGCCGC
TTCGCCCAACTCGCACCTCACCATTGTACAATGCGCCAGGTGCATCTAA
back to top