Ggra8575.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra8575.t1
Unique NameGgra8575.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length356
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000116_piloncontigtig00000116_pilon:59295..60826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra8575Ggra8575Gracilaria gracilis GNS1m malegenetig00000116_pilon 59295..60826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8575.t1Ggra8575.t1Gracilaria gracilis GNS1m malepolypeptidetig00000116_pilon 59295..60826 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8575.t1.start1Ggra8575.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000116_pilon 59295..59297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8575.t1.CDS1Ggra8575.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000116_pilon 59295..59540 +
Ggra8575.t1.CDS2Ggra8575.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000116_pilon 59628..59917 +
Ggra8575.t1.CDS3Ggra8575.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000116_pilon 60295..60826 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8575.t1.exon1Ggra8575.t1.exon1Gracilaria gracilis GNS1m maleexontig00000116_pilon 59295..59540 +
Ggra8575.t1.exon2Ggra8575.t1.exon2Gracilaria gracilis GNS1m maleexontig00000116_pilon 59628..59917 +
Ggra8575.t1.exon3Ggra8575.t1.exon3Gracilaria gracilis GNS1m maleexontig00000116_pilon 60295..60826 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8575.t1.intron1Ggra8575.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000116_pilon 59541..59627 +
Ggra8575.t1.intron2Ggra8575.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000116_pilon 59918..60294 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra8575.t1.stop1Ggra8575.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000116_pilon 60824..60826 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra8575.t1 ID=Ggra8575.t1|Name=Ggra8575.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=356bp
MAADELDANWQTVMLDMGYSQLDVSLAAHAGMCDIHQAMKYIEQNASSSP
TRVVADSAAPRPPPPPPPPPFAMSEEWPALKEPQFGAIANARDSLDRLGV
TEEGTSTPARSADDLATSHDDQIRAALGLSRKDQYERDTEKTIQVSRQDA
FAAAGNADHDIIRAIEESLKYNQQPTNALYANPTNVVRSMRVSDEKRIFI
GAQQDASEFKELFRNMVEMGLKQDVSQSHPSSLDDDVMQQQSPSPESPAS
LVRDLFNLHFRQETLRSENDIGKAASDAENPVTTRDDTTAIIVNATIKQE
RNLYAGLDDYALAKIEHSDGDTLSETREMDANALEHNQVNMTTPRISRAG
QDTVV*
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spliced messenger RNA

>Ggra8575.t1 ID=Ggra8575.t1|Name=Ggra8575.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1068bp|location=Sequence derived from alignment at tig00000116_pilon:59295..60826+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCCGACGAGCTCGACGCCAACTGGCAGACCGTCATGCTGGACAT
GGGCTACTCGCAGCTGGACGTGTCACTAGCCGCGCACGCCGGCATGTGCG
ACATCCACCAGGCCATGAAGTACATCGAGCAAAACGCGTCGTCCTCGCCC
ACGCGCGTCGTGGCCGACTCTGCCGcgccacggccaccgccaccgccgcc
accgccaccgTTCGCTATGTCGGAGGAGTGGCCCGCGCTCAAAGAGCCGC
AGTTCGGCGCCATCGCCAACGCGCGCGACTCGTTGGATCGTCTCGGTGTC
ACGGAAGAAGGCACGTCTACGCCCGCGCGCTCCGCCGACGACTTGGCCAC
GTCGCACGATGATCAGATCCGAGCCGCTTTGGGGCTTTCCAGGAAGGATC
AGTACGAGCGCGATACGGAAAAGACCATCCAGGTCTCCCGACAGGATGCC
TTTGCCGCCGCTGGCAACGCTGACCATGATATCATCCGCGCCATCGAGGA
GAGCCTCAAGTATAACCAGCAACCCACGAACGCGCTTTACGCCAATCCCA
CCAATGTTGTTCGCTCCATGCGCGTCTCGGACGAGAAGCGTATTTTCATT
GGAGCGCAACAAGATGCATCTGAATTCAAGGAGCTCTTTCGTAACATGGT
TGAAATGGGGCTCAAGCAAGATGTGTCGCAGTCGCATCCCTCGTCGCTTG
ATGACGATGTTATGCAACAGCAATCTCCGTCCCCTGAATCGCCTGCATCG
CTTGTGAGGGACCTCTTTAACCTCCATTTCCGACAGGAGACGCTGCGTTC
GGAGAATGATATTGGCAAAGCCGCTAGTGACGCCGAGAATCCGGTTACCA
CCAGAGATGATACCACCGCTATCATTGTCAATGCCACTATCAAACAGGAA
CGAAACCTGTATGCTGGGCTGGATGATTATGCACTCGCAAAGATCGAGCA
CAGTGATGGCGACACATTGTCTGAGACACGAGAGATGGATGCAAATGCGC
TCGAGCACAATCAGGTAAACATGACCACACCGCGTATCTCAAGAGCTGGT
CAGGATACCGTCGTTTAG
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protein sequence of Ggra8575.t1

>Ggra8575.t1 ID=Ggra8575.t1|Name=Ggra8575.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=356bp
MAADELDANWQTVMLDMGYSQLDVSLAAHAGMCDIHQAMKYIEQNASSSP
TRVVADSAAPRPPPPPPPPPFAMSEEWPALKEPQFGAIANARDSLDRLGV
TEEGTSTPARSADDLATSHDDQIRAALGLSRKDQYERDTEKTIQVSRQDA
FAAAGNADHDIIRAIEESLKYNQQPTNALYANPTNVVRSMRVSDEKRIFI
GAQQDASEFKELFRNMVEMGLKQDVSQSHPSSLDDDVMQQQSPSPESPAS
LVRDLFNLHFRQETLRSENDIGKAASDAENPVTTRDDTTAIIVNATIKQE
RNLYAGLDDYALAKIEHSDGDTLSETREMDANALEHNQVNMTTPRISRAG
QDTVV*
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mRNA from alignment at tig00000116_pilon:59295..60826+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra8575.t1 ID=Ggra8575.t1|Name=Ggra8575.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1532bp|location=Sequence derived from alignment at tig00000116_pilon:59295..60826+ (Gracilaria gracilis GNS1m male)
ATGGCTGCCGACGAGCTCGACGCCAACTGGCAGACCGTCATGCTGGACAT
GGGCTACTCGCAGCTGGACGTGTCACTAGCCGCGCACGCCGGCATGTGCG
ACATCCACCAGGCCATGAAGTACATCGAGCAAAACGCGTCGTCCTCGCCC
ACGCGCGTCGTGGCCGACTCTGCCGcgccacggccaccgccaccgccgcc
accgccaccgTTCGCTATGTCGGAGGAGTGGCCCGCGCTCAAAGAGGTGC
TGCCCACCGACCACCTGCCCCACTACCACAACATCAGCTCAGACGCATCG
CAGCTGCCCGTTGACGCCCCGCAGAACCCGTAGCCGCAGTTCGGCGCCAT
CGCCAACGCGCGCGACTCGTTGGATCGTCTCGGTGTCACGGAAGAAGGCA
CGTCTACGCCCGCGCGCTCCGCCGACGACTTGGCCACGTCGCACGATGAT
CAGATCCGAGCCGCTTTGGGGCTTTCCAGGAAGGATCAGTACGAGCGCGA
TACGGAAAAGACCATCCAGGTCTCCCGACAGGATGCCTTTGCCGCCGCTG
GCAACGCTGACCATGATATCATCCGCGCCATCGAGGAGAGCCTCAAGTAT
AACCAGCAACCCACGAACGCGCTGTATTTTTGCAGTCTACCGCCTATATC
AGCGAGCCGCCTGCGCAGCGTGTTAGTTTCGATCATCCGGTTGGATTGAG
GAAAATTGACGACACTTGCTACTTGAACTCTTTGCTTCAGGTGTACTACT
ACCTTCCGCCTTTTTGCCGCGCCACCATGAAGTACGGCTCGCCTGTCAGC
CCTGCCAACGCCTCCACATTTCCAAACGGCGATACCACTAAGGAGGAGAA
GAGCAAAAACCACCTCCGACATGCTGCGGGACCTGAATGATGTCGCCCCC
CAACTTCCGACCGTCGACCTGTCTGGTCAGCCTCAACCCAAGTCCGCCCT
AAAGACGCAACAGGAGACGGATGCCGCCATGAAGCGCTTAGCAATCGCAG
TTACGCCAATCCCACCAATGTTGTTCGCTCCATGCGCGTCTCGGACGAGA
AGCGTATTTTCATTGGAGCGCAACAAGATGCATCTGAATTCAAGGAGCTC
TTTCGTAACATGGTTGAAATGGGGCTCAAGCAAGATGTGTCGCAGTCGCA
TCCCTCGTCGCTTGATGACGATGTTATGCAACAGCAATCTCCGTCCCCTG
AATCGCCTGCATCGCTTGTGAGGGACCTCTTTAACCTCCATTTCCGACAG
GAGACGCTGCGTTCGGAGAATGATATTGGCAAAGCCGCTAGTGACGCCGA
GAATCCGGTTACCACCAGAGATGATACCACCGCTATCATTGTCAATGCCA
CTATCAAACAGGAACGAAACCTGTATGCTGGGCTGGATGATTATGCACTC
GCAAAGATCGAGCACAGTGATGGCGACACATTGTCTGAGACACGAGAGAT
GGATGCAAATGCGCTCGAGCACAATCAGGTAAACATGACCACACCGCGTA
TCTCAAGAGCTGGTCAGGATACCGTCGTTTAG
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Coding sequence (CDS) from alignment at tig00000116_pilon:59295..60826+

>Ggra8575.t1 ID=Ggra8575.t1|Name=Ggra8575.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1068bp|location=Sequence derived from alignment at tig00000116_pilon:59295..60826+ (Gracilaria gracilis GNS1m male)
ATGGCTGCCGACGAGCTCGACGCCAACTGGCAGACCGTCATGCTGGACAT
GGGCTACTCGCAGCTGGACGTGTCACTAGCCGCGCACGCCGGCATGTGCG
ACATCCACCAGGCCATGAAGTACATCGAGCAAAACGCGTCGTCCTCGCCC
ACGCGCGTCGTGGCCGACTCTGCCGcgccacggccaccgccaccgccgcc
accgccaccgTTCGCTATGTCGGAGGAGTGGCCCGCGCTCAAAGAGCCGC
AGTTCGGCGCCATCGCCAACGCGCGCGACTCGTTGGATCGTCTCGGTGTC
ACGGAAGAAGGCACGTCTACGCCCGCGCGCTCCGCCGACGACTTGGCCAC
GTCGCACGATGATCAGATCCGAGCCGCTTTGGGGCTTTCCAGGAAGGATC
AGTACGAGCGCGATACGGAAAAGACCATCCAGGTCTCCCGACAGGATGCC
TTTGCCGCCGCTGGCAACGCTGACCATGATATCATCCGCGCCATCGAGGA
GAGCCTCAAGTATAACCAGCAACCCACGAACGCGCTTTACGCCAATCCCA
CCAATGTTGTTCGCTCCATGCGCGTCTCGGACGAGAAGCGTATTTTCATT
GGAGCGCAACAAGATGCATCTGAATTCAAGGAGCTCTTTCGTAACATGGT
TGAAATGGGGCTCAAGCAAGATGTGTCGCAGTCGCATCCCTCGTCGCTTG
ATGACGATGTTATGCAACAGCAATCTCCGTCCCCTGAATCGCCTGCATCG
CTTGTGAGGGACCTCTTTAACCTCCATTTCCGACAGGAGACGCTGCGTTC
GGAGAATGATATTGGCAAAGCCGCTAGTGACGCCGAGAATCCGGTTACCA
CCAGAGATGATACCACCGCTATCATTGTCAATGCCACTATCAAACAGGAA
CGAAACCTGTATGCTGGGCTGGATGATTATGCACTCGCAAAGATCGAGCA
CAGTGATGGCGACACATTGTCTGAGACACGAGAGATGGATGCAAATGCGC
TCGAGCACAATCAGGTAAACATGACCACACCGCGTATCTCAAGAGCTGGT
CAGGATACCGTCGTTTAG
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