Ggra8575.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra8575.t1
Unique Name	Ggra8575.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	356

Homology

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BLAST of Ggra8575.t1 vs. uniprot
Match: A0A2V3IFW0 (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFW0_9FLOR)

HSP 1 Score: 133 bits (335), Expect = 1.110e-30
Identity = 79/146 (54.11%), Postives = 99/146 (67.81%), Query Frame = 0

Query:  182 NPTNVVRSMRVSDEKRIFIGAQQDASEFKELFRNMVEMGLKQDVSQSHPSSLDDDVMQQQSPS---PESPASLVRDLFNLHFRQETLRSENDIGKAASDAENPVTTRDDTTAIIVNATIKQERNLYAGLDDYALAKIEHSDGDTLS 324
            +PT V R+MR SD + I IGAQQDASEF ELF +MVE GL QD SQS   S+D D M   SP     +SPASLV+DLF + FRQE  RS        ++ + PV T  +TTAIIV+AT ++ER+L+ GL+DY L +IE SD DT+S
Sbjct:  342 DPTQVTRAMRDSDGEPIVIGAQQDASEFNELFLDMVEKGLNQDTSQS--LSIDQDAMDDSSPQRSDSKSPASLVKDLFTIRFRQEIHRSMPVASGINTEPDEPVITSGETTAIIVSATSQKERDLHGGLEDYTLTRIEPSDDDTVS 485

The following BLAST results are available for this feature:

BLAST of Ggra8575.t1 vs. uniprot

BLAST of Ggra8575.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IFW0	1.110e-30	54.11	Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Grac...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.70.10	Cysteine proteinases	coord: 122..346 e-value: 3.5E-6 score: 28.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..250
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 223..248
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..74

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000116_pilon	contig	tig00000116_pilon:59295..60826 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8575.t1	Ggra8575.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000116_pilon 59295..60826 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra8575.t1 ID=Ggra8575.t1|Name=Ggra8575.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=356bp
MAADELDANWQTVMLDMGYSQLDVSLAAHAGMCDIHQAMKYIEQNASSSP
TRVVADSAAPRPPPPPPPPPFAMSEEWPALKEPQFGAIANARDSLDRLGV
TEEGTSTPARSADDLATSHDDQIRAALGLSRKDQYERDTEKTIQVSRQDA
FAAAGNADHDIIRAIEESLKYNQQPTNALYANPTNVVRSMRVSDEKRIFI
GAQQDASEFKELFRNMVEMGLKQDVSQSHPSSLDDDVMQQQSPSPESPAS
LVRDLFNLHFRQETLRSENDIGKAASDAENPVTTRDDTTAIIVNATIKQE
RNLYAGLDDYALAKIEHSDGDTLSETREMDANALEHNQVNMTTPRISRAG
QDTVV*