Ggra6939.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6939.t1
Unique NameGgra6939.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length100
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:183550..183849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28532.XP_010533935.1
PFAMsAlba
Max annot lvl35493|Streptophyta
KEGG koko:K14525
KEGG Pathwayko03008,ko03013,map03008,map03013
Evalue2.19e-08
EggNOG OGsKOG2567@1|root,KOG2567@2759|Eukaryota,37MQY@33090|Viridiplantae,3GEIG@35493|Streptophyta,3HX23@3699|Brassicales
EC3.1.26.5
DescriptionAlba
COG categoryS
BRITEko00000,ko00001,ko01000,ko03009,ko03016,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6939Ggra6939Gracilaria gracilis GNS1m malegenetig00000115_pilon 183550..183849 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6939.t1.stop1Ggra6939.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000115_pilon 183550..183552 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6939.t1.CDS1Ggra6939.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000115_pilon 183550..183849 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6939.t1.exon1Ggra6939.t1.exon1Gracilaria gracilis GNS1m maleexontig00000115_pilon 183550..183849 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6939.t1.start1Ggra6939.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000115_pilon 183847..183849 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6939.t1Ggra6939.t1Gracilaria gracilis GNS1m malepolypeptidetig00000115_pilon 183550..183849 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6939.t1 ID=Ggra6939.t1|Name=Ggra6939.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=100bp
MLPDDKREIRVRPSGRLHNYMEYALAQLQHHSAQYVKLVAQGNAIAKAVT
LAELLKRKHPTLRQHCVLDTVDGCNTPRVVIRLEKEPPDQQQQQPQQPQ*
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spliced messenger RNA

>Ggra6939.t1 ID=Ggra6939.t1|Name=Ggra6939.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=300bp|location=Sequence derived from alignment at tig00000115_pilon:183550..183849- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCCGGACGACAAACGAGAGATTCGGGTTCGACCTTCGGGCCGTCT
GCACAACTACATGGAGTACGCACTCGCCCAGCTGCAGCACCACTCCGCGC
AGTACGTCAAACTGGTGGCGCAAGGAAACGCCATCGCCAAGGCGGTCACA
CTGGCCGAGCTGTTGAAGCGAAAGCACCCCACGTTGCGACAGCACTGTGT
GTTGGATACCGTGGATGGCTGCAACACACCGCGTGTTGTGATTCGGTTAG
AAAAGGAGCCGCCCGACCAACAACAACAACAACCACAACAACCACAATGA
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protein sequence of Ggra6939.t1

>Ggra6939.t1 ID=Ggra6939.t1|Name=Ggra6939.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=100bp
MLPDDKREIRVRPSGRLHNYMEYALAQLQHHSAQYVKLVAQGNAIAKAVT
LAELLKRKHPTLRQHCVLDTVDGCNTPRVVIRLEKEPPDQQQQQPQQPQ*
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mRNA from alignment at tig00000115_pilon:183550..183849-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6939.t1 ID=Ggra6939.t1|Name=Ggra6939.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=300bp|location=Sequence derived from alignment at tig00000115_pilon:183550..183849- (Gracilaria gracilis GNS1m male)
ATGTTGCCGGACGACAAACGAGAGATTCGGGTTCGACCTTCGGGCCGTCT
GCACAACTACATGGAGTACGCACTCGCCCAGCTGCAGCACCACTCCGCGC
AGTACGTCAAACTGGTGGCGCAAGGAAACGCCATCGCCAAGGCGGTCACA
CTGGCCGAGCTGTTGAAGCGAAAGCACCCCACGTTGCGACAGCACTGTGT
GTTGGATACCGTGGATGGCTGCAACACACCGCGTGTTGTGATTCGGTTAG
AAAAGGAGCCGCCCGACCAACAACAACAACAACCACAACAACCACAATGA
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Coding sequence (CDS) from alignment at tig00000115_pilon:183550..183849-

>Ggra6939.t1 ID=Ggra6939.t1|Name=Ggra6939.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=300bp|location=Sequence derived from alignment at tig00000115_pilon:183550..183849- (Gracilaria gracilis GNS1m male)
ATGTTGCCGGACGACAAACGAGAGATTCGGGTTCGACCTTCGGGCCGTCT
GCACAACTACATGGAGTACGCACTCGCCCAGCTGCAGCACCACTCCGCGC
AGTACGTCAAACTGGTGGCGCAAGGAAACGCCATCGCCAAGGCGGTCACA
CTGGCCGAGCTGTTGAAGCGAAAGCACCCCACGTTGCGACAGCACTGTGT
GTTGGATACCGTGGATGGCTGCAACACACCGCGTGTTGTGATTCGGTTAG
AAAAGGAGCCGCCCGACCAACAACAACAACAACCACAACAACCACAATGA
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