Ggra6939.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6939.t1
Unique NameGgra6939.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length100
Homology
BLAST of Ggra6939.t1 vs. uniprot
Match: A0A2V3IUT8 (Alba domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUT8_9FLOR)

HSP 1 Score: 102 bits (253), Expect = 3.270e-26
Identity = 48/85 (56.47%), Postives = 65/85 (76.47%), Query Frame = 0
Query:    1 MLPDDKREIRVRPSGRLHNYMEYALAQLQHHSAQYVKLVAQGNAIAKAVTLAELLKRKHPTLRQHCVLDTVDGCNTPRVVIRLEK 85
            M P+D R+I V+PSGRL+NY+EYA   L   +  YV+ +A G AI+KAVTLAE+LKR + TLRQ C LD+V+  NTPR+VI+++K
Sbjct:    1 MRPEDDRDIVVKPSGRLYNYIEYATRVLARDTVDYVQFIAVGKAISKAVTLAEILKRNNTTLRQKCTLDSVEPSNTPRLVIQMQK 85          
BLAST of Ggra6939.t1 vs. uniprot
Match: A0A7N0UST8 (Alba domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UST8_KALFE)

HSP 1 Score: 57.0 bits (136), Expect = 7.820e-8
Identity = 27/63 (42.86%), Postives = 41/63 (65.08%), Query Frame = 0
Query:    8 EIRVRPSGRLHNYMEYALAQLQHHSAQYVKLVAQGNAIAKAVTLAELLKRKHPTLRQHCVLDT 70
            EIR+   G + NY+ YAL+ LQ H  + + L A G AI+KAV +AE++K++ P L Q  V+ +
Sbjct:   20 EIRITALGFVRNYISYALSLLQDHKTKEIVLKAMGQAISKAVGIAEIIKKRTPGLHQDIVISS 82          
BLAST of Ggra6939.t1 vs. uniprot
Match: K6VHS0 (ALBA domain containing protein (Fragment) n=1 Tax=Plasmodium cynomolgi (strain B) TaxID=1120755 RepID=K6VHS0_PLACD)

HSP 1 Score: 55.5 bits (132), Expect = 8.540e-8
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 0
Query:    3 PDDKREIRVRPSGRLHNYMEYALAQLQHHSAQYVKLVAQGNAIAKAVTLAELLKRKHPTLRQ 64
            P D+ E+R+  +GR+ NY+ Y    L     + +K+ A GNAI KAVTLAE++KR+   L Q
Sbjct:    7 PIDEDEMRITSTGRMTNYVNYGAKILGEEDKKSLKIKATGNAIGKAVTLAEIIKRRFKGLHQ 68          
BLAST of Ggra6939.t1 vs. uniprot
Match: A0A7I4FGS4 (Alba domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A7I4FGS4_PHYPA)

HSP 1 Score: 57.4 bits (137), Expect = 1.210e-7
Identity = 28/71 (39.44%), Postives = 42/71 (59.15%), Query Frame = 0
Query:    2 LPDDKREIRVRPSGRLHNYMEYALAQLQHHSAQYVKLVAQGNAIAKAVTLAELLKRKHPTLRQHCVLDTVD 72
            +P  + EIR+   G++ NY+ YA   LQ   A  + L A G AI KAVT+AE++KR+   L Q+  + + D
Sbjct:   14 IPISENEIRITTQGKMRNYITYATTLLQDKGASAIVLKAMGRAINKAVTIAEIIKRRIAGLHQNTSIGSTD 84          
BLAST of Ggra6939.t1 vs. uniprot
Match: A0A7N0UUE3 (Alba domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UUE3_KALFE)

HSP 1 Score: 57.0 bits (136), Expect = 1.350e-7
Identity = 27/63 (42.86%), Postives = 41/63 (65.08%), Query Frame = 0
Query:    8 EIRVRPSGRLHNYMEYALAQLQHHSAQYVKLVAQGNAIAKAVTLAELLKRKHPTLRQHCVLDT 70
            EIR+   G + NY+ YAL+ LQ H  + + L A G AI+KAV +AE++K++ P L Q  V+ +
Sbjct:   20 EIRITALGFVRNYISYALSLLQDHKTKEIVLKAMGQAISKAVGIAEIIKKRTPGLHQDIVISS 82          
BLAST of Ggra6939.t1 vs. uniprot
Match: A0A7N0UUL6 (Alba domain-containing protein n=4 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UUL6_KALFE)

HSP 1 Score: 57.0 bits (136), Expect = 1.450e-7
Identity = 27/63 (42.86%), Postives = 41/63 (65.08%), Query Frame = 0
Query:    8 EIRVRPSGRLHNYMEYALAQLQHHSAQYVKLVAQGNAIAKAVTLAELLKRKHPTLRQHCVLDT 70
            EIR+   G + NY+ YAL+ LQ H  + + L A G AI+KAV +AE++K++ P L Q  V+ +
Sbjct:   50 EIRITALGFVRNYISYALSLLQDHKTKEIVLKAMGQAISKAVGIAEIIKKRTPGLHQDIVISS 112          
BLAST of Ggra6939.t1 vs. uniprot
Match: A0A2I0ARV6 (Ribonucleases P/MRP protein subunit RPP25 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0ARV6_9ASPA)

HSP 1 Score: 57.0 bits (136), Expect = 1.720e-7
Identity = 26/67 (38.81%), Postives = 43/67 (64.18%), Query Frame = 0
Query:    5 DKREIRVRPSGRLHNYMEYALAQLQHHSAQYVKLVAQGNAIAKAVTLAELLKRKHPTLRQHCVLDTV 71
            ++ EIR+   G + NY+ YA + LQ   A+ + L A G AI+KAV +AE++K+++P L Q   + +V
Sbjct:   17 NENEIRITTQGLIRNYISYATSLLQEKRAREIVLKAMGQAISKAVAIAEIIKKRNPGLHQDTTVSSV 83          
BLAST of Ggra6939.t1 vs. uniprot
Match: A0A0V0H407 (Putative RNA-binding protein FUS-like (Fragment) n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0H407_SOLCH)

HSP 1 Score: 55.8 bits (133), Expect = 2.920e-7
Identity = 27/69 (39.13%), Postives = 41/69 (59.42%), Query Frame = 0
Query:    3 PDDKREIRVRPSGRLHNYMEYALAQLQHHSAQYVKLVAQGNAIAKAVTLAELLKRKHPTLRQHCVLDTV 71
            P ++ EIR+   G + NY+ YA   LQ    + + L A G AI+KAV +AE++KR+ P L Q   + +V
Sbjct:   15 PINEYEIRITSQGLVRNYINYANTLLQERHGKEIVLKAMGQAISKAVAIAEIIKRRMPILHQDTAISSV 83          
BLAST of Ggra6939.t1 vs. uniprot
Match: A0A199VJD9 (Ribonuclease P protein subunit p25-like protein n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199VJD9_ANACO)

HSP 1 Score: 55.1 bits (131), Expect = 3.160e-7
Identity = 25/67 (37.31%), Postives = 42/67 (62.69%), Query Frame = 0
Query:    5 DKREIRVRPSGRLHNYMEYALAQLQHHSAQYVKLVAQGNAIAKAVTLAELLKRKHPTLRQHCVLDTV 71
            ++ EIR+   G + NY+ YA + LQ    + + L A G AI+KAV +AE++K+++P L Q   + +V
Sbjct:   17 NENEIRITSQGLIRNYVSYATSLLQEKRVREIVLKAMGQAISKAVAIAEIIKKRNPGLHQDTSISSV 83          
BLAST of Ggra6939.t1 vs. uniprot
Match: RNA-binding protein FUS-like n=2 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4DB585 (RNA-binding protein FUS-like n=2 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4DB585)

HSP 1 Score: 55.8 bits (133), Expect = 5.010e-7
Identity = 25/67 (37.31%), Postives = 43/67 (64.18%), Query Frame = 0
Query:    5 DKREIRVRPSGRLHNYMEYALAQLQHHSAQYVKLVAQGNAIAKAVTLAELLKRKHPTLRQHCVLDTV 71
            ++ E+R+   G + NY+ YA + LQ  + + + L A G AI+KAV +AE++K++ P L Q  V+ +V
Sbjct:   18 NENEVRITTQGLVRNYVSYATSLLQEKNVREIVLKAMGQAISKAVAIAEIIKKRFPGLYQDTVISSV 84          
The following BLAST results are available for this feature:
BLAST of Ggra6939.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IUT83.270e-2656.47Alba domain-containing protein n=1 Tax=Gracilariop... [more]
A0A7N0UST87.820e-842.86Alba domain-containing protein n=1 Tax=Kalanchoe f... [more]
K6VHS08.540e-843.55ALBA domain containing protein (Fragment) n=1 Tax=... [more]
A0A7I4FGS41.210e-739.44Alba domain-containing protein n=2 Tax=Physcomitri... [more]
A0A7N0UUE31.350e-742.86Alba domain-containing protein n=1 Tax=Kalanchoe f... [more]
A0A7N0UUL61.450e-742.86Alba domain-containing protein n=4 Tax=Kalanchoe f... [more]
A0A2I0ARV61.720e-738.81Ribonucleases P/MRP protein subunit RPP25 n=1 Tax=... [more]
A0A0V0H4072.920e-739.13Putative RNA-binding protein FUS-like (Fragment) n... [more]
A0A199VJD93.160e-737.31Ribonuclease P protein subunit p25-like protein n=... [more]
RNA-binding protein FUS-like n=2 Tax=Zingiber officinale TaxID=94328 RepID=UPI001C4DB5855.010e-737.31RNA-binding protein FUS-like n=2 Tax=Zingiber offi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002775DNA/RNA-binding protein Alba-likePFAMPF01918Albacoord: 8..65
e-value: 1.1E-12
score: 47.6
IPR036882Alba-like domain superfamilyGENE3D3.30.110.20coord: 2..95
e-value: 6.4E-14
score: 53.6
IPR036882Alba-like domain superfamilySUPERFAMILY82704AlbA-likecoord: 5..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:183550..183849 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6939.t1Ggra6939.t1Gracilaria gracilis GNS1m malemRNAtig00000115_pilon 183550..183849 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6939.t1 ID=Ggra6939.t1|Name=Ggra6939.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=100bp
MLPDDKREIRVRPSGRLHNYMEYALAQLQHHSAQYVKLVAQGNAIAKAVT
LAELLKRKHPTLRQHCVLDTVDGCNTPRVVIRLEKEPPDQQQQQPQQPQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002775DNA/RNA-bd_Alba-like
IPR036882Alba-like_dom_sf