Ggra6936.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6936.t1
Unique NameGgra6936.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length118
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000115_piloncontigtig00000115_pilon:179713..180194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1385935.N836_02555
Preferred nameytfC
PFAMsFKBP_C
Max annot lvl1117|Cyanobacteria
KEGG koko:K01802
Evalue1.68e-38
EggNOG OGsCOG0545@1|root,COG0545@2|Bacteria,1G5T1@1117|Cyanobacteria,1HAQ3@1150|Oscillatoriales
EC5.2.1.8
DescriptionPFAM FKBP-type peptidyl-prolyl cis-trans isomerase
COG categoryO
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6936Ggra6936Gracilaria gracilis GNS1m malegenetig00000115_pilon 179713..180194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6936.t1Ggra6936.t1Gracilaria gracilis GNS1m malepolypeptidetig00000115_pilon 179713..180194 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6936.t1.start1Ggra6936.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000115_pilon 179713..179715 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6936.t1.CDS1Ggra6936.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000115_pilon 179713..179879 +
Ggra6936.t1.CDS2Ggra6936.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000115_pilon 180008..180194 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6936.t1.exon1Ggra6936.t1.exon1Gracilaria gracilis GNS1m maleexontig00000115_pilon 179713..179879 +
Ggra6936.t1.exon2Ggra6936.t1.exon2Gracilaria gracilis GNS1m maleexontig00000115_pilon 180008..180194 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6936.t1.intron1Ggra6936.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000115_pilon 179880..180007 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6936.t1.stop1Ggra6936.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000115_pilon 180192..180194 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6936.t1 ID=Ggra6936.t1|Name=Ggra6936.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=118bp
MSSAGAAQLMQQDVVVGNGAAFKSGDLVHVHYTLTLGSFDSGQVVDSSRS
RGRPFQYRYDTGSVISGWDQGVTGMRVGGRRLLVIPPELGYGTAGAGGVI
PPNATLYFDIELLKVGY*
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spliced messenger RNA

>Ggra6936.t1 ID=Ggra6936.t1|Name=Ggra6936.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=354bp|location=Sequence derived from alignment at tig00000115_pilon:179713..180194+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAGCGCCGGCGCGGCACAACTGATGCAGCAGGACGTGGTGGTGGG
CAACGGCGCCGCCTTCAAGTCTGGCGACCTGGTGCACGTGCACTACACAC
TGACGCTGGGGTCGTTTGACAGCGGGCAGGTGGTAGACAGCTCACGCAGT
CGCGGCCGACCGTTCCAGTACCGCTATGACACCGGGTCGGTGATCAGCGG
GTGGGACCAGGGCGTGACGGGCATGAGGGTGGGCGGGCGTCGACTGCTGG
TGATCCCGCCCGAGCTGGGCTACGGCACTGCTGGCGCGGGCGGCGTGATT
CCGCCCAACGCCACGCTGTACTTTGACATTGAGCTGCTCAAGGTGGGCTA
CTAG
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protein sequence of Ggra6936.t1

>Ggra6936.t1 ID=Ggra6936.t1|Name=Ggra6936.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=118bp
MSSAGAAQLMQQDVVVGNGAAFKSGDLVHVHYTLTLGSFDSGQVVDSSRS
RGRPFQYRYDTGSVISGWDQGVTGMRVGGRRLLVIPPELGYGTAGAGGVI
PPNATLYFDIELLKVGY*
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mRNA from alignment at tig00000115_pilon:179713..180194+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6936.t1 ID=Ggra6936.t1|Name=Ggra6936.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=482bp|location=Sequence derived from alignment at tig00000115_pilon:179713..180194+ (Gracilaria gracilis GNS1m male)
ATGTCGAGCGCCGGCGCGGCACAACTGATGCAGCAGGACGTGGTGGTGGG
CAACGGCGCCGCCTTCAAGTCTGGCGACCTGGTGCACGTGCACTACACAC
TGACGCTGGGGTCGTTTGACAGCGGGCAGGTGGTAGACAGCTCACGCAGT
CGCGGCCGACCGTTCCAGTACGTTGTGTGCGCGCCGTATAGATAGATATA
TCTGCGTGTGTTGTTGTTGTGTGTATCTAACTGCTTTTTGTTTTGTTTGt
gctgctgctgctgctgctgctgctgctgctgctgccgctgcGTAGGTACC
GCTATGACACCGGGTCGGTGATCAGCGGGTGGGACCAGGGCGTGACGGGC
ATGAGGGTGGGCGGGCGTCGACTGCTGGTGATCCCGCCCGAGCTGGGCTA
CGGCACTGCTGGCGCGGGCGGCGTGATTCCGCCCAACGCCACGCTGTACT
TTGACATTGAGCTGCTCAAGGTGGGCTACTAG
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Coding sequence (CDS) from alignment at tig00000115_pilon:179713..180194+

>Ggra6936.t1 ID=Ggra6936.t1|Name=Ggra6936.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=354bp|location=Sequence derived from alignment at tig00000115_pilon:179713..180194+ (Gracilaria gracilis GNS1m male)
ATGTCGAGCGCCGGCGCGGCACAACTGATGCAGCAGGACGTGGTGGTGGG
CAACGGCGCCGCCTTCAAGTCTGGCGACCTGGTGCACGTGCACTACACAC
TGACGCTGGGGTCGTTTGACAGCGGGCAGGTGGTAGACAGCTCACGCAGT
CGCGGCCGACCGTTCCAGTACCGCTATGACACCGGGTCGGTGATCAGCGG
GTGGGACCAGGGCGTGACGGGCATGAGGGTGGGCGGGCGTCGACTGCTGG
TGATCCCGCCCGAGCTGGGCTACGGCACTGCTGGCGCGGGCGGCGTGATT
CCGCCCAACGCCACGCTGTACTTTGACATTGAGCTGCTCAAGGTGGGCTA
CTAG
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