Ggra6347.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6347.t1
Unique NameGgra6347.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length475
Homology
BLAST of Ggra6347.t1 vs. uniprot
Match: A0A2V3IKM2 (DNA topoisomerase 6 subunit B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKM2_9FLOR)

HSP 1 Score: 498 bits (1282), Expect = 7.450e-168
Identity = 285/482 (59.13%), Postives = 318/482 (65.98%), Query Frame = 0
Query:   45 LKFKSPAEFFAVHHH------PGAGG------------ERARCRRGYQPVAVCVPVLQRISRSQFRSMLSMDAARTRVDHSLYEDVESVKEXXXXXXXXXXXXXXXXXXXXXXSQPSAKGSKQHRALSNDVFRLTVEDKCSGMAHHDVPNMMGRVLAGTKFSVRQARSNFGLGSKMALIWAKMSTGLPVHITT-AKQNCPITECVLDIDITNNVPTVIKHTQSANTRKWRGTKVSVTIEGNLSTYRSKILAYMRQTAVITPYAQFHFKFQSAIDAVDAKDFEALFSRRTHHMPPPAREVNYHPSSVNQLIVKELVEQVKDSTTL-------------------------------------------ICALLHEARFDKADGSCLSPTGEYNLPLGITKELKPNLVATHAEPADVFEGHPLIVEAGVTLGGSGTKPGINIYRFATGIPLLFEAGNDVVTKTARDSIRWNNYKISPTTDRIGV 464
            LKFKSPAEFFA + +      PG               + A        V++ +   QRI   +FRSML MDAA  RVDHSLY+     ++                      + P +    +H A  N VFR+TV+D   GMAH DVPNMM RVLAGTK+ VRQAR  FGLGSKMALIWAKMSTGLP+ +TT A  + PIT CVLDIDITNN PTVI HT+S N + WRG+KVSVTI+GN +TYRSKILAYMRQ AVITPYAQFH  FQS +DA D+KD EA+FSRRT HMPPPAREV +HPSSVNQLI+K+L+  VK STTL                                           I ALLH ARFDK +GSCLSP GEYNL LGITKELKP LVATHAEPADVFEGHP IVEAGV LGGSG KPGIN+YRFA  IPLLFEAGNDVVTKTARDSIRWNNYKISPTTDRIGV
Sbjct:   42 LKFKSPAEFFAENKNIAGFDNPGKSLYTTIRELVENALDAAESIHNLPDVSLHI---QRIPPHRFRSMLGMDAAPHRVDHSLYKRPPIPEQTTTKNSNLNNNI----------NNPDSHSRPRHTA--NHVFRVTVQDNGCGMAHDDVPNMMARVLAGTKYCVRQARGKFGLGSKMALIWAKMSTGLPLCVTTSASPSAPITHCVLDIDITNNRPTVISHTKSPNPKTWRGSKVSVTIQGNWTTYRSKILAYMRQMAVITPYAQFHLIFQSNVDAADSKDLEAIFSRRTDHMPPPAREVKHHPSSVNQLILKQLLGLVKPSTTLVHFLSTQLDSIPRSLAVRLINELGPDFTSHMTVSQLQLNHIRQIDALLHAARFDKPNGSCLSPAGEYNLRLGITKELKPTLVATHAEPADVFEGHPFIVEAGVALGGSGMKPGINVYRFANRIPLLFEAGNDVVTKTARDSIRWNNYKISPTTDRIGV 508          
BLAST of Ggra6347.t1 vs. uniprot
Match: R7QF50 (Type II DNA topoisomerase VI subunit B n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QF50_CHOCR)

HSP 1 Score: 459 bits (1180), Expect = 8.090e-152
Identity = 272/511 (53.23%), Postives = 314/511 (61.45%), Query Frame = 0
Query:   44 KLKFKSPAEFFAVHHH------PGA------------GGERARCRRGYQPVAVCVPVLQRISRSQFRSMLSMDAARTRVDHSLYEDVESVKEXXXXXXXXXXXXXXXXXXXXXXS-----------------------------QPSAKGSKQHRALSNDVFRLTVEDKCSGMAHHDVPNMMGRVLAGTKFSVRQARSNFGLGSKMALIWAKMSTGLPVHITTAKQNCPITECVLDIDITNNVPTVIKHTQSANTRKWRGTKVSVTIEGNLSTYRSKILAYMRQTAVITPYAQFHFKFQSAIDAVDAKDFEALFSRRTHHMPPPAREVNYHPSSVNQLIVKELVEQVKDSTTL-------------------------------------------ICALLHEARFDKADGSCLSPTGEYNLPLGITKELKPNLVATHAEPADVFEGHPLIVEAGVTLGGSGTKPGINIYRFATGIPLLFEAGNDVVTKTARDSIRWNNYKISPTTDRIGV 464
            KLKFKSPAEFFA + +      PG             G + A        + + V    RI + QFR+M+ MD  R RVD SLY+DVESVKE     XXXXXXXX         S                             QPS   SK+ ++  ND+F +TV D  SGMAH DVPNMMGRVLAGTK+ VRQ R  FGLGSKMALIW+KMSTGLPV I TAK    +T C+LDIDI  N+P VI+ ++  N   WRG+KVSVTIEGN STYR+KIL Y+RQ AVITPYAQF   F S  D  D+KDFE +FSRRT  MP  A EV +HPSSVNQL++K+L+  VK+  +L                                           I ALLH ARF+  DG CLSP GEYNL LGITKELKP++VATHAEPADVFEGHP IVEAGV LGG+G KPG+NI+RFA  IPLLFEAGNDVVT+TARD IRWN+YKISP TDRIGV
Sbjct:   51 KLKFKSPAEFFAENKNIAGFDNPGKSLYTTIRELVENGLDAAEAIGTLPDIEIFVA---RIDKQQFRTMVGMDGNRNRVDASLYKDVESVKERKAREXXXXXXXXRTKSKDGSLSASGSGQLQTDNDDANDSKELTLESTQEASQPSQTSSKKGKSGGNDIFCVTVTDNGSGMAHDDVPNMMGRVLAGTKYCVRQTRGKFGLGSKMALIWSKMSTGLPVRINTAKAGSEVTNCILDIDIARNIPNVIELSRKENPSGWRGSKVSVTIEGNWSTYRAKILLYVRQMAVITPYAQFRLTFSSGYDNADSKDFELVFSRRTDKMPRTAAEVKHHPSSVNQLLLKQLIGDVKEDMSLVRFLTTQFVAIPRSLATRLITELGKGFTQHMTVGELTLNNIRQIDALLHAARFENPDGLCLSPAGEYNLRLGITKELKPSMVATHAEPADVFEGHPFIVEAGVALGGTGMKPGLNIFRFANRIPLLFEAGNDVVTRTARDGIRWNSYKISPNTDRIGV 558          
BLAST of Ggra6347.t1 vs. uniprot
Match: DNA topoisomerase 6 subunit B isoform X2 n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC3D32E (DNA topoisomerase 6 subunit B isoform X2 n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC3D32E)

HSP 1 Score: 340 bits (873), Expect = 2.850e-107
Identity = 203/489 (41.51%), Postives = 267/489 (54.60%), Query Frame = 0
Query:   37 PSSARNAKLKFKSPAEFFAVHHHPGAGGERARC---------------RRGYQPVAVCVPVLQRISRSQFRSMLSMDAARTRVDHSLYEDVESVK---EXXXXXXXXXXXXXXXXXXXXXXSQPSAKGSKQHRALSNDVFRLTVEDKCSGMAHHDVPNMMGRVLAGTKFSVRQARSNFGLGSKMALIWAKMSTGLPVHITTAKQNCPITE-CVLDIDITNNVPTVIKHTQSANTRKWRGTKVSVTIEGNLSTYRSKILAYMRQTAVITPYAQFHFKFQSAIDAVDAKDFEALFSRRTHHMPPPAREVNYHPSSVNQLIVKELVEQVKDSTTL------------------------------------------ICALLHEARFDKADGSCLSPTGEYNLPLGITKELKPNLVATHAEPADVFEGHPLIVEAGVTLGGSGTKPGINIYRFATGIPLLFEAGNDVVTKTARDSIRWNNYKISPTTDRIGV 464
            P  A+++ LK KSPAEFFA + +        +C                     + +    ++ I + +F SM+ +   R R+D  LY+D E+ K   +                       +PS + S + R  ++  FR+T +D   GM H D+PNM GRVL+GTK+ ++Q R  FGLG+KMALIW+KMSTGLP+ I+++ +    T  C LDIDI  NVP +  H +  NT  W G ++ V IEGN STYRSKIL YMRQ AVITPYAQF FKF S  DA D K+    F+RRT+ MPP   E  +HPS+V+ L++K L+ +      L                                          I  L  +A+FD   G CLSP GEYNL LGI KEL P++VAT++    VFEGHP IVEAGV++GG   K G+NI+RFA  IPLLFE G DVVT+TA   I WNNYKI+ T D+IGV
Sbjct:   21 PRKAKDSVLKQKSPAEFFAENKNIAGFDNPGKCLYTTVRELVENSLDSAESISELPIIEVTIEEIGKIKFNSMIGL-VDRERIDKELYDDFETAKAREKRLAKEARDQEVQAKSAALGKKVKEPSVQKSMKGRGETS-YFRVTCKDNGRGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRGQSYTSFCRLDIDIHRNVPHIFLHEKKENTEGWHGAEIQVVIEGNWSTYRSKILHYMRQMAVITPYAQFLFKFVS--DAAD-KNATIQFARRTNVMPPVPCETKHHPSAVDLLLIKRLIVETSKQNLLQFLQHEFVNIGKKYAERLIGEMGQDFSQKMAVKSLTSQQIVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATYSGSPQVFEGHPFIVEAGVSMGGKDVKQGLNIFRFANRIPLLFEQGADVVTRTALKRINWNNYKINQTQDKIGV 504          
BLAST of Ggra6347.t1 vs. uniprot
Match: A0A1R3HPP0 (DNA topoisomerase 6 subunit B n=2 Tax=Malvaceae TaxID=3629 RepID=A0A1R3HPP0_COCAP)

HSP 1 Score: 333 bits (853), Expect = 4.830e-105
Identity = 210/491 (42.77%), Postives = 267/491 (54.38%), Query Frame = 0
Query:   37 PSSARNAKLKFKSPAEFFAVHHHPGAGGERARC---------------RRGYQPVAVCVPVLQRISRSQFRSMLSMDAARTRVDHSLYEDVESVK--EXXXXXXXXXXXXXXXXXXXXXXSQPSA--KGSKQHRALSNDVFRLTVEDKCSGMAHHDVPNMMGRVLAGTKFSVRQARSNFGLGSKMALIWAKMSTGLPVHITTA-KQNCPITECVLDIDITNNVPTVIKHTQSANTRKWRGTKVSVTIEGNLSTYRSKILAYMRQTAVITPYAQFHFKFQSAIDAVDAKDFEALFSRRTHHMPPPAREVNYHPSSVNQLIVKELVEQVKDSTTLICALLHE-------------------------------------------ARFDKADGSCLSPTGEYNLPLGITKELKPNLVATHAEPADVFEGHPLIVEAGVTLGGSGTKPGINIYRFATGIPLLFEAGNDVVTKTARDSIRWNNYKISPTTDRIGV 464
            P  A+ + LK KSPAEFFA + +        +C                     + V    ++ I +S+F SM+ +   R RVD  LY+D E+ K  E                       + SA  KG K     S   FR+T +D   GM H D+PNM GRVL+GTK+ ++Q R  FGLG+KMALIW+KMSTGLP+ I+++ K    ++ C LDIDI  N+P V  H +  N  +W G ++ V IEGN +TYRSKIL YMRQ AVITPYAQF FKF S  D+ D K+    F+RRT  MPP   E  +HPSSV+ L++K L+ +    T L+  L HE                                           A+FD   G CLSP GEYNL LGI KEL P++VAT++  A VFEGHP IVEAGV+LGG   K G+NI+RFA  IPLLFE G DVVT+TA   I WN YKI+ T D+IGV
Sbjct:   17 PKKAKESILKQKSPAEFFAENKNIAGFDNPGKCLYTTVRELVENALDSAESISELPVVEITIEEIVKSKFNSMIGL-VDRERVDAELYDDFETAKAREKRLAKEARAQELQAKNAALGKKVKESAAPKGVKGRGEAS--FFRVTCKDNGRGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMKSQNYVSFCRLDIDIHRNIPHVHLHEKRDNKDRWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVS--DSPD-KNVTIKFARRTDVMPPVPVETKHHPSSVDILLIKRLIAETS-KTNLMQFLQHEFVNIGKSLAERLIGEMGPDFSPKMAVKSLTDQQIVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSLGGKDVKHGLNIFRFANRIPLLFEQGGDVVTRTALKRINWNTYKINQTQDKIGV 500          
BLAST of Ggra6347.t1 vs. uniprot
Match: A0A0L0FYT8 (HATPase_c domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FYT8_9EUKA)

HSP 1 Score: 334 bits (857), Expect = 7.500e-105
Identity = 178/363 (49.04%), Postives = 229/363 (63.09%), Query Frame = 0
Query:  145 KGSKQHRALSNDVFRLTVEDKCSGMAHHDVPNMMGRVLAGTKFSVRQARSNFGLGSKMALIWAKMSTGLPVHITTAK-QNCPITECVLDIDITNNVPTVIKHTQSANTRKWRGTKVSVTIEGNLSTYRSKILAYMRQTAVITPYAQFHFKFQSAIDAVDAKDFEALFSRRTHHMPPPAREVNYHPSSVNQLIVK------------------------------ELVEQV-KDSTTLICAL-----------LHEARFDKADGSCLSPTGEYNLPLGITKELKPNLVATHAEPADVFEGHPLIVEAGVTLGGSGTKPGINIYRFATGIPLLFEAGNDVVTKTARDSIRWNNYKISPTTDRIGV 464
            KG+K+      D +++TV D  SGM H D+PNM GRVLAGTK+ V+Q R  FGLG+KMALIWAKMSTG P+ + +++  N  +TEC LDIDI  N P +I+H +  NT  WRG++++V IEG  +TYR+KIL+YMRQ AVITPYA+F       +   + K FE  ++RRT HMP PA EV +HPSSV+ +++K                              E++E++ +D    I  L            H+  F   DG CLSP GEYNL LGI KELKP +VAT   PA +FEGHP IVEAGV+LGG   + GIN+YRFA  IPLLFE G DVVT+TA   I W +YK++PTTD+IGV
Sbjct:   78 KGNKK-----TDYYKVTVTDNGSGMRHEDIPNMFGRVLAGTKYQVKQNRGRFGLGAKMALIWAKMSTGQPLSVRSSRGPNSKVTECTLDIDIYKNAPRIIRHVEVPNTEGWRGSEITVVIEGTWTTYRAKILSYMRQLAVITPYAEFSL---IHVSLKEDKSFEVRYARRTEHMPAPAYEVKHHPSSVDLIVLKKILGDAAHANKKLKRTLTHEFAGISSVKANEIIERMGRDKMDAIAELEEKDIKSLRGIFHDTNFPTPDGDCLSPAGEYNLRLGIMKELKPEMVATCQVPAGIFEGHPFIVEAGVSLGGKKVRQGINVYRFANRIPLLFENGADVVTRTAMTRINWKSYKMNPTTDKIGV 432          
BLAST of Ggra6347.t1 vs. uniprot
Match: A0A1U7ZUU4 (DNA topoisomerase 6 subunit B n=5 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U7ZUU4_NELNU)

HSP 1 Score: 335 bits (859), Expect = 1.260e-104
Identity = 205/487 (42.09%), Postives = 264/487 (54.21%), Query Frame = 0
Query:   40 ARNAKLKFKSPAEFFAVHHHPGAGGERARC---------------RRGYQPVAVCVPVLQRISRSQFRSMLSMDAARTRVDHSLYEDVESVK---EXXXXXXXXXXXXXXXXXXXXXXSQPSA-KGSKQHRALSNDVFRLTVEDKCSGMAHHDVPNMMGRVLAGTKFSVRQARSNFGLGSKMALIWAKMSTGLPVHITTAKQNCPITE-CVLDIDITNNVPTVIKHTQSANTRKWRGTKVSVTIEGNLSTYRSKILAYMRQTAVITPYAQFHFKFQSAIDAVDAKDFEALFSRRTHHMPPPAREVNYHPSSVNQLIVKELVEQVKDSTTL------------------------------------------ICALLHEARFDKADGSCLSPTGEYNLPLGITKELKPNLVATHAEPADVFEGHPLIVEAGVTLGGSGTKPGINIYRFATGIPLLFEAGNDVVTKTARDSIRWNNYKISPTTDRIGV 464
            A+ + LK KSPAEFFA + +        +C                     + V    ++ I +S+F SM+ +   R RVD  LY+D ES K   +                       +P+A KG+K     S   FR+T +D   GM H D+PNM GRVL+GTK+ ++Q R  FGLG+KMALIW+KMSTGLP+ I+++ +    T  C LDIDI  N+P +  H +  N  KW G ++ V IEGN +TYRSKIL YMRQ AVITPYAQF FK+ S  DA D K+    F+RRT  MPP   E  +HPS+V+ L++K L+ +      L                                          I  L  +A+FD   G CLSP GEYNL LGI KEL P +VAT++    VFEGHP IVEAGV+LGG   K G+NI+RFA  IPLLFE G DVVT+TA   I WN+YKI+ T D+IGV
Sbjct:   24 AKESVLKQKSPAEFFAENKNIAGFDNPGKCLYTTVRELVENSLDSAESISELPVIEVTIEEIGKSRFNSMIGL-IDRERVDEELYDDYESAKAREKRLAKEARIQEMQAKNAALRKKVKEPAAPKGTKGRGEAS--FFRVTCKDNGRGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMRGQNYTSFCRLDIDIHRNIPHIHLHEKRDNKEKWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKYVS--DAAD-KNVTIRFARRTDVMPPVPLETKHHPSAVDLLLIKRLIAETSKQNLLQFLQHEFVNIGKSYAERLIGEMGPDFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELHPEMVATYSCSPQVFEGHPFIVEAGVSLGGKDVKQGLNIFRFANRIPLLFERGADVVTRTALKRINWNSYKINQTQDKIGV 504          
BLAST of Ggra6347.t1 vs. uniprot
Match: A0A2G5ECD5 (DNA topoisomerase 6 subunit B n=3 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5ECD5_AQUCA)

HSP 1 Score: 335 bits (859), Expect = 1.330e-104
Identity = 207/490 (42.24%), Postives = 267/490 (54.49%), Query Frame = 0
Query:   37 PSSARNAKLKFKSPAEFFAVHHH------PGAG---------GERARCRRGYQPVAVCVPVLQRISRSQFRSMLSMDAARTRVDHSLYEDVESVK---EXXXXXXXXXXXXXXXXXXXXXXSQPSA-KGSKQHRALSNDVFRLTVEDKCSGMAHHDVPNMMGRVLAGTKFSVRQARSNFGLGSKMALIWAKMSTGLPVHITTAKQNCPITE-CVLDIDITNNVPTVIKHTQSANTRKWRGTKVSVTIEGNLSTYRSKILAYMRQTAVITPYAQFHFKFQSAIDAVDAKDFEALFSRRTHHMPPPAREVNYHPSSVNQLIVKELVEQVKDSTTL------------------------------------------ICALLHEARFDKADGSCLSPTGEYNLPLGITKELKPNLVATHAEPADVFEGHPLIVEAGVTLGGSGTKPGINIYRFATGIPLLFEAGNDVVTKTARDSIRWNNYKISPTTDRIGV 464
            P  A+ + LK KSPAEFF+ + +      PG                       + V    ++ I + +F SM+ +   + RVD +LY+D ES K   +                       +PSA KG K     S   FR+T +D   GM H D+PNM GRVL+GTK+ ++Q R  +GLG+KMALIW+KMSTGLP+ I+++ +N   T  C LDIDI  N+P V  H +  N  +W G ++ V IEGN +TYRSKIL YMRQ AVITPYAQF FKF S  DAVD K     F+RRT  MPP   E  YHPS+V+ L++K L+ +      L                                          I  L  +A+FD   G CLSP GEYNL LGI KEL P++VAT++  A VFEGHP IVEAGV++GG   K G+NI+RFA  IPLLFE G DVVT+TA   I W++YKI+ T D+IGV
Sbjct:   21 PKKAKESVLKQKSPAEFFSENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVIEITIEEIGKVKFNSMIGL-VDQERVDQALYDDFESAKAREKRLAKEAKNQEIQAKNASLGKKTKEPSAPKGIKGRGEAS--FFRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKYGLGAKMALIWSKMSTGLPIEISSSMKNQSYTSFCRLDIDIHRNIPHVHIHEKRDNKERWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVS--DAVD-KSITIRFARRTDIMPPVPVETKYHPSAVDLLLIKRLIAETSKQNLLQFLQHEFVNLGKAHAERLIGEMGPDFSPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGIVKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKDVKQGLNIFRFANRIPLLFEQGADVVTRTALKRINWSSYKINQTQDKIGV 504          
BLAST of Ggra6347.t1 vs. uniprot
Match: A0A199UVR2 (DNA topoisomerase 6 subunit B n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199UVR2_ANACO)

HSP 1 Score: 335 bits (859), Expect = 1.360e-104
Identity = 209/507 (41.22%), Postives = 272/507 (53.65%), Query Frame = 0
Query:   20 APAKSPKRARVRKHTAEPSSARNAKLKFKSPAEFFAVHHH------PGAG---------GERARCRRGYQPVAVCVPVLQRISRSQFRSMLSMDAARTRVDHSLYEDVESVK---EXXXXXXXXXXXXXXXXXXXXXXSQPS-AKGSKQHRALSNDVFRLTVEDKCSGMAHHDVPNMMGRVLAGTKFSVRQARSNFGLGSKMALIWAKMSTGLPVHITTA-KQNCPITECVLDIDITNNVPTVIKHTQSANTRKWRGTKVSVTIEGNLSTYRSKILAYMRQTAVITPYAQFHFKFQSAIDAVDAKDFEALFSRRTHHMPPPAREVNYHPSSVNQLIVKELVEQVKDSTTL------------------------------------------ICALLHEARFDKADGSCLSPTGEYNLPLGITKELKPNLVATHAEPADVFEGHPLIVEAGVTLGGSGTKPGINIYRFATGIPLLFEAGNDVVTKTARDSIRWNNYKISPTTDRIGV 464
            AP + PK++   K    P  A+ + LK KSPAEFFA + +      PG                       + V    ++ I++S+F +M+ +   R RVD  LY+D ES K   +                       +PS AKG+K     +   FR+T +D   GM H D+PNM GRVL+GTK+ ++Q R  FGLG+KMALIW+KMSTGLP+ IT++ K    ++ C LDIDI  N+P V  H +  N  +W G ++ V IEGN +T+RSKIL YMRQ AVITPYAQF FKF   I     K     F+RRT  MPP   E  +HPS+V+ L++K LV +      L                                          I  L  +A+FD   G CLSP GEYNL LGI KEL+P+LVAT+A    VFEGHP IVEAG++LGG   K G+NI+RFA  IPLLFE G DV+T+TA   I WN+YKI+   D+IGV
Sbjct:    9 APEEEPKKSNRGKAKQNPKKAKESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVIEIAIEEINKSKFNTMIGL-VDRERVDEELYDDFESAKAREKRLAKEARVQEIQAKNIALGKKFKEPSTAKGAKSRGEAA--FFRVTCKDNGRGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEITSSMKGQNYVSYCRLDIDIHKNIPHVHAHEKRENKDRWHGAEIQVIIEGNWTTHRSKILHYMRQMAVITPYAQFLFKF---ISDTAEKTVTVRFARRTDVMPPVPLETKHHPSAVDLLLIKRLVAETSKQNLLQFLQHEFVNIRKSYAERLIGEMGPDFSSKMPVKSLTSQQIVRIQQLFRQAKFDDPSGDCLSPAGEYNLRLGIIKELQPDLVATYAGSPQVFEGHPFIVEAGISLGGKDVKQGLNIFRFANRIPLLFEQGADVITRTALKRINWNSYKINQMQDKIGV 509          
BLAST of Ggra6347.t1 vs. uniprot
Match: A0A0K9P2W3 (DNA topoisomerase 6 subunit B n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9P2W3_ZOSMR)

HSP 1 Score: 335 bits (859), Expect = 1.360e-104
Identity = 204/493 (41.38%), Postives = 269/493 (54.56%), Query Frame = 0
Query:   38 SSARNAKLKFKSPAEFFAVHHH------PGAG---------GERARCRRGYQPVAVCVPVLQRISRSQFRSMLSMDAARTRVDHSLYEDVESVKEXXXXXXXXXXXXXXXXXXXXXXSQPSAKGSKQHRALSN-------DVFRLTVEDKCSGMAHHDVPNMMGRVLAGTKFSVRQARSNFGLGSKMALIWAKMSTGLPVHITTAK--QNCPITECVLDIDITNNVPTVIKHTQSANTRKWRGTKVSVTIEGNLSTYRSKILAYMRQTAVITPYAQFHFKFQSAIDAVDAKDFEALFSRRTHHMPPPAREVNYHPSSVNQLIVKELVEQVKDSTTL------------------------------------------ICALLHEARFDKADGSCLSPTGEYNLPLGITKELKPNLVATHAEPADVFEGHPLIVEAGVTLGGSGTKPGINIYRFATGIPLLFEAGNDVVTKTARDSIRWNNYKISPTTDRIGV 464
            S  + + LK KSPAEFFA + +      PG                       + V    ++ I++S+F +M+ +   R RVD  LY+D ESVK                       +  S K +K+ + L           FR+T +D   GM H+D+PNM+GRVL+GTK+ ++Q R  FGLG+KMALIW+KMSTGLP+ I+++   QN  ++ C LDIDI  N+P +  H +  NT  W G ++ V IEGN +TYRSKIL YMRQ AVITPYAQF F F   I  +  K+    FSRRT  MPP   E  YHPS+V+ L++K L+ +      L                                          I  L  +A+FD  +G CLSP GEYNL LGITKEL P++VAT++    VFEGHP IVEAG++LGG   K G+NI+RFA  IPLLFE G DVVT+TA+  I WN+YKI+ T D+IGV
Sbjct:   28 SKVKESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENALDSAESISELPVIEVTIEEITKSKFNTMIGL-VDRERVDEELYDDFESVK-----VREKRLLKEARVQEMNTKNAASGKKTKEPQQLKTIKGRGDTSFFRVTCKDNGRGMPHNDIPNMLGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMIDQNY-VSFCKLDIDIHRNIPHIHLHEKRDNTEDWHGAEIQVIIEGNWTTYRSKILHYMRQMAVITPYAQFVFSF---ISDMQDKNVTVQFSRRTDVMPPIPPETKYHPSAVDLLLIKRLIAETTKQNLLQFLQHEFVNIGKSYAQRLIEEMGADFSSKMTVKSLSSQQLVRIHQLFRQAKFDDPNGVCLSPAGEYNLRLGITKELHPDMVATYSGSPQVFEGHPFIVEAGISLGGKDVKQGLNIFRFANRIPLLFERGADVVTRTAQKRINWNSYKINQTQDKIGV 510          
BLAST of Ggra6347.t1 vs. uniprot
Match: DNA topoisomerase 6 subunit B isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C3E1E (DNA topoisomerase 6 subunit B isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C3E1E)

HSP 1 Score: 335 bits (858), Expect = 1.560e-104
Identity = 204/497 (41.05%), Postives = 266/497 (53.52%), Query Frame = 0
Query:   37 PSSARNAKLKFKSPAEFFAVHHHPGAGGERARCRRGYQPVAVCVP-----------------VLQRISRSQFRSMLSMDAARTRVDHSLYEDVESVKEXXXXXXXXXXXXXXXXXXXXXXSQPSAKGSKQHRALSNDV---------FRLTVEDKCSGMAHHDVPNMMGRVLAGTKFSVRQARSNFGLGSKMALIWAKMSTGLPVHITTA-KQNCPITECVLDIDITNNVPTVIKHTQSANTRKWRGTKVSVTIEGNLSTYRSKILAYMRQTAVITPYAQFHFKFQSAIDAVDAKDFEALFSRRTHHMPPPAREVNYHPSSVNQLIVKELVEQVKDSTTL------------------------------------------ICALLHEARFDKADGSCLSPTGEYNLPLGITKELKPNLVATHAEPADVFEGHPLIVEAGVTLGGSGTKPGINIYRFATGIPLLFEAGNDVVTKTARDSIRWNNYKISPTTDRIGV 464
            P S++++ LK KSPAEFFA + +        +    Y  V   V                   ++ I +S+F SM+ +   R RVD  LY+D E+VK                       ++ +A G K      + V         +++T +D   GM H D+PNM GRVL+GTK+ ++Q R  FGLG+KMALIW+KMSTGLP+ I+++ K    +T C LDIDI  N+P V  H +  NT +W G ++ V IEGN +TYRSKIL YMRQ AVITPYAQF F+F   I     K+    F+RRT  MPP   E  +HPSSV+ L++K L+      T L                                          I  L  +A+FD   G CLSP GEYNL LG+ KEL P++VAT++  A VFEGHP IVEAGV+LGG   K GINI+RFA  IPLLFE G DVVT+TA   I W+ YKI+ T D+IGV
Sbjct:   18 PKSSKDSNLKQKSPAEFFAENKNIAGFDNPGKSL--YTTVRELVENALDSAESISQLPEVEITIEEIGKSKFNSMIGL-VDRERVDEKLYDDYETVKAREKRLAKEARAQEIQ-------AKNAASGKKVKEPAVSKVLKGRGEASYYKVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISSSMKGQSYVTFCRLDIDIHRNIPHVHLHEKKGNTERWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFRF---ISDTPEKNITIKFARRTDVMPPVPVETKHHPSSVDLLLIKRLIADTSKKTLLQFLQNEFVNINKSLAARLIGEMGPDFSPNMAVKSLTSQQMVRIHQLFRQAKFDDPSGDCLSPAGEYNLRLGVIKELHPDMVATYSGSAQVFEGHPFIVEAGVSLGGKDVKQGINIFRFANRIPLLFEQGGDVVTRTALKRINWSTYKINQTQDKIGV 501          
The following BLAST results are available for this feature:
BLAST of Ggra6347.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IKM27.450e-16859.13DNA topoisomerase 6 subunit B n=1 Tax=Gracilariops... [more]
R7QF508.090e-15253.23Type II DNA topoisomerase VI subunit B n=1 Tax=Cho... [more]
DNA topoisomerase 6 subunit B isoform X2 n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC3D32E2.850e-10741.51DNA topoisomerase 6 subunit B isoform X2 n=1 Tax=T... [more]
A0A1R3HPP04.830e-10542.77DNA topoisomerase 6 subunit B n=2 Tax=Malvaceae Ta... [more]
A0A0L0FYT87.500e-10549.04HATPase_c domain-containing protein n=1 Tax=Sphaer... [more]
A0A1U7ZUU41.260e-10442.09DNA topoisomerase 6 subunit B n=5 Tax=Nelumbo nuci... [more]
A0A2G5ECD51.330e-10442.24DNA topoisomerase 6 subunit B n=3 Tax=Thalictroide... [more]
A0A199UVR21.360e-10441.22DNA topoisomerase 6 subunit B n=1 Tax=Ananas comos... [more]
A0A0K9P2W31.360e-10441.38DNA topoisomerase 6 subunit B n=1 Tax=Zostera mari... [more]
DNA topoisomerase 6 subunit B isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C3E1E1.560e-10441.05DNA topoisomerase 6 subunit B isoform X1 n=2 Tax=T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015320DNA topoisomerase VI, subunit B, transducerPFAMPF09239Topo-VIb_transcoord: 364..464
e-value: 1.8E-26
score: 92.9
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 363..466
e-value: 1.6E-29
score: 104.6
IPR036890Histidine kinase/HSP90-like ATPase superfamilyGENE3D3.30.565.10coord: 123..324
e-value: 1.6E-40
score: 141.0
IPR036890Histidine kinase/HSP90-like ATPase superfamilySUPERFAMILY55874ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinasecoord: 150..294
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..152
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..150
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 350..455
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 228..344
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..474
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
IPR005734DNA topoisomerase VI, subunit BPANTHERPTHR10871:SF4DNA TOPOISOMERASE 6 SUBUNIT Bcoord: 228..344
coord: 350..455
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 364..464

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:290494..292047 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6347.t1Ggra6347.t1Gracilaria gracilis GNS1m malemRNAtig00000096_pilon 290494..292047 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6347.t1 ID=Ggra6347.t1|Name=Ggra6347.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=475bp
MPLRKRKQPSVAASGAAAAAPAKSPKRARVRKHTAEPSSARNAKLKFKSP
AEFFAVHHHPGAGGERARCRRGYQPVAVCVPVLQRISRSQFRSMLSMDAA
RTRVDHSLYEDVESVKERKAREAKEKRLAKRAAAANASDSQPSAKGSKQH
RALSNDVFRLTVEDKCSGMAHHDVPNMMGRVLAGTKFSVRQARSNFGLGS
KMALIWAKMSTGLPVHITTAKQNCPITECVLDIDITNNVPTVIKHTQSAN
TRKWRGTKVSVTIEGNLSTYRSKILAYMRQTAVITPYAQFHFKFQSAIDA
VDAKDFEALFSRRTHHMPPPAREVNYHPSSVNQLIVKELVEQVKDSTTLI
CALLHEARFDKADGSCLSPTGEYNLPLGITKELKPNLVATHAEPADVFEG
HPLIVEAGVTLGGSGTKPGINIYRFATGIPLLFEAGNDVVTKTARDSIRW
NNYKISPTTDRIGVTYFPGFRSDA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015320TopoVI_B_transducer
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR036890HATPase_C_sf
IPR005734TopoVI_B
IPR020568Ribosomal_S5_D2-typ_fold