Ggra6347.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6347.t1
Unique NameGgra6347.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length475
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000096_piloncontigtig00000096_pilon:290494..292047 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog218851.Aquca_009_00182.1
Preferred nameTOP6B
PFAMsHATPase_c,HATPase_c_3,Topo-VIb_trans
Max annot lvl35493|Streptophyta
KEGG koko:K03167
GOsGO:0000902,GO:0003674,GO:0003735,GO:0003824,GO:0003916,GO:0003918,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0007049,GO:0007275,GO:0007389,GO:0008094,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009330,GO:0009653,GO:0009719,GO:0009725,GO:0009741,GO:0009888,GO:0009987,GO:0010026,GO:0010033,GO:0010467,GO:0014070,GO:0015935,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016853,GO:0016887,GO:0017111,GO:0019538,GO:0022402,GO:0022613,GO:0030154,GO:0032501,GO:0032502,GO:0032989,GO:0032991,GO:0033993,GO:0034641,GO:0034645,GO:0042023,GO:0042221,GO:0042254,GO:0042623,GO:0042802,GO:0042803,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0044786,GO:0046483,GO:0046983,GO:0048856,GO:0048869,GO:0050896,GO:0061505,GO:0071704,GO:0071840,GO:0090304,GO:0090558,GO:0140097,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1990904
Evalue8.23e-106
EggNOG OGsCOG1389@1|root,2QQC0@2759|Eukaryota,37QC4@33090|Viridiplantae,3GEN4@35493|Streptophyta
EC5.99.1.3
DescriptionComponent of the DNA topoisomerase VI involved in chromatin organization and progression of endoreduplication cycles. Relaxes both positive and negative superturns and exhibits a strong decatenase activity. The B subunit binds ATP
COG categoryB
BRITEko00000,ko01000,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6347Ggra6347Gracilaria gracilis GNS1m malegenetig00000096_pilon 290494..292047 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6347.t1Ggra6347.t1Gracilaria gracilis GNS1m malepolypeptidetig00000096_pilon 290494..292047 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6347.t1.start1Ggra6347.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000096_pilon 290494..290496 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6347.t1.CDS1Ggra6347.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000096_pilon 290494..291540 +
Ggra6347.t1.CDS2Ggra6347.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000096_pilon 291670..292047 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6347.t1.exon1Ggra6347.t1.exon1Gracilaria gracilis GNS1m maleexontig00000096_pilon 290494..291540 +
Ggra6347.t1.exon2Ggra6347.t1.exon2Gracilaria gracilis GNS1m maleexontig00000096_pilon 291670..292047 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6347.t1.intron1Ggra6347.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000096_pilon 291541..291669 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6347.t1.stop1Ggra6347.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000096_pilon 292045..292047 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6347.t1 ID=Ggra6347.t1|Name=Ggra6347.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=475bp
MPLRKRKQPSVAASGAAAAAPAKSPKRARVRKHTAEPSSARNAKLKFKSP
AEFFAVHHHPGAGGERARCRRGYQPVAVCVPVLQRISRSQFRSMLSMDAA
RTRVDHSLYEDVESVKERKAREAKEKRLAKRAAAANASDSQPSAKGSKQH
RALSNDVFRLTVEDKCSGMAHHDVPNMMGRVLAGTKFSVRQARSNFGLGS
KMALIWAKMSTGLPVHITTAKQNCPITECVLDIDITNNVPTVIKHTQSAN
TRKWRGTKVSVTIEGNLSTYRSKILAYMRQTAVITPYAQFHFKFQSAIDA
VDAKDFEALFSRRTHHMPPPAREVNYHPSSVNQLIVKELVEQVKDSTTLI
CALLHEARFDKADGSCLSPTGEYNLPLGITKELKPNLVATHAEPADVFEG
HPLIVEAGVTLGGSGTKPGINIYRFATGIPLLFEAGNDVVTKTARDSIRW
NNYKISPTTDRIGVTYFPGFRSDA*
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spliced messenger RNA

>Ggra6347.t1 ID=Ggra6347.t1|Name=Ggra6347.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1425bp|location=Sequence derived from alignment at tig00000096_pilon:290494..292047+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCTGAGGAAACGCAAGCAGCCAAGCGTGGCGGCAAGCGGCGCCGC
CGCTGCCGCGCCCGCCAAGTCGCCCAAGCGCGCGCGCGTGCGCAAGCACA
CCGCAGAGCCCTCTTCCGCGCGCAATGCGAAGCTCAAGTTCAAGTCGCCT
GCTGAGTTCTTCGCTGTACACCACCATCCGGGAGCTGGTGGAGAACGCGC
TCGATGCCGCCGAGGCTATCAACCAGTTGCCGTATGTGTCCCTGTGCTGC
AGCGCATATCGCGCTCGCAGTTCCGTTCCATGCTGAGCATGGATGCCGCC
CGTACGCGCGTCGATCACTCGCTGTATGAGGATGTGGAAAGCGTCAAGGA
GAGAAAGGCCAGGGAGGCCAAGGAGAAACGACTTGCCAAACGAGCTGCTG
CTGCTAATGCGTCCGACTCGCAGCCGTCCGCGAAGGGCAGCAAACAACAC
CGAGCGCTTTCCAACGACGTGTTTCGCCTCACCGTCGAGGATAAGTGCAG
CGGCATGGCGCATCACGATGTGCCCAACATGATGGGGCGCGTGCTGGCCG
GAACAAAGTTCTCTGTGCGACAGGCCAGAAGCAATTTCGGTCTCGGCTCC
AAGATGGCACTCATTTGGGCCAAGATGAGTACTGGTTTACCGGTGCACAT
CACCACTGCGAAGCAAAACTGCCCCATTACTGAGTGCGTGCTTGACATTG
ATATCACGAACAACGTGCCTACCGTCATCAAGCACACCCAGTCCGCCAAC
ACTCGCAAATGGCGAGGCACCAAGGTTTCAGTCACCATCGAGGGCAATTT
GAGCACCTATCGCTCCAAGATTCTGGCGTACATGAGACAAACGGCTGTCA
TAACGCCCTATGCGCAGTTTCATTTCAAGTTTCAGTCCGCCATCGATGCA
GTTGATGCCAAGGATTTTGAAGCCCTTTTCTCTAGACGCACCCACCATAT
GCCGCCCCCGGCTCGTGAGGTGAACTATCATCCGTCCTCTGTTAATCAGC
TCATTGTCAAGGAGCTCGTCGAGCAGGTCAAAGACTCCACAACCCTTATT
TGCGCCTTACTGCACGAAGCGCGCTTTGATAAGGCAGACGGCTCTTGTCT
TTCTCCAACTGGTGAGTACAATCTGCCTCTGGGTATCACGAAGGAACTGA
AACCCAACCTTGTTGCCACGCATGCGGAGCCAGCAGATGTATTCGAGGGG
CACCCGCTTATCGTAGAAGCCGGCGTCACACTAGGAGGCTCCGGCACGAA
GCCAGGTATCAATATCTACCGCTTTGCCACCGGCATTCCGCTCTTGTTTG
AGGCTGGTAATGACGTTGTCACCAAGACTGCCCGCGACTCGATTCGATGG
AACAACTACAAGATCTCGCCCACTACCGATCGCATTGGTGTCACGTATTT
CCCTGGCTTTCGTTCGGATGCCTGA
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protein sequence of Ggra6347.t1

>Ggra6347.t1 ID=Ggra6347.t1|Name=Ggra6347.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=475bp
MPLRKRKQPSVAASGAAAAAPAKSPKRARVRKHTAEPSSARNAKLKFKSP
AEFFAVHHHPGAGGERARCRRGYQPVAVCVPVLQRISRSQFRSMLSMDAA
RTRVDHSLYEDVESVKERKAREAKEKRLAKRAAAANASDSQPSAKGSKQH
RALSNDVFRLTVEDKCSGMAHHDVPNMMGRVLAGTKFSVRQARSNFGLGS
KMALIWAKMSTGLPVHITTAKQNCPITECVLDIDITNNVPTVIKHTQSAN
TRKWRGTKVSVTIEGNLSTYRSKILAYMRQTAVITPYAQFHFKFQSAIDA
VDAKDFEALFSRRTHHMPPPAREVNYHPSSVNQLIVKELVEQVKDSTTLI
CALLHEARFDKADGSCLSPTGEYNLPLGITKELKPNLVATHAEPADVFEG
HPLIVEAGVTLGGSGTKPGINIYRFATGIPLLFEAGNDVVTKTARDSIRW
NNYKISPTTDRIGVTYFPGFRSDA*
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mRNA from alignment at tig00000096_pilon:290494..292047+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6347.t1 ID=Ggra6347.t1|Name=Ggra6347.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1554bp|location=Sequence derived from alignment at tig00000096_pilon:290494..292047+ (Gracilaria gracilis GNS1m male)
ATGCCGCTGAGGAAACGCAAGCAGCCAAGCGTGGCGGCAAGCGGCGCCGC
CGCTGCCGCGCCCGCCAAGTCGCCCAAGCGCGCGCGCGTGCGCAAGCACA
CCGCAGAGCCCTCTTCCGCGCGCAATGCGAAGCTCAAGTTCAAGTCGCCT
GCTGAGTTCTTCGCTGTACACCACCATCCGGGAGCTGGTGGAGAACGCGC
TCGATGCCGCCGAGGCTATCAACCAGTTGCCGTATGTGTCCCTGTGCTGC
AGCGCATATCGCGCTCGCAGTTCCGTTCCATGCTGAGCATGGATGCCGCC
CGTACGCGCGTCGATCACTCGCTGTATGAGGATGTGGAAAGCGTCAAGGA
GAGAAAGGCCAGGGAGGCCAAGGAGAAACGACTTGCCAAACGAGCTGCTG
CTGCTAATGCGTCCGACTCGCAGCCGTCCGCGAAGGGCAGCAAACAACAC
CGAGCGCTTTCCAACGACGTGTTTCGCCTCACCGTCGAGGATAAGTGCAG
CGGCATGGCGCATCACGATGTGCCCAACATGATGGGGCGCGTGCTGGCCG
GAACAAAGTTCTCTGTGCGACAGGCCAGAAGCAATTTCGGTCTCGGCTCC
AAGATGGCACTCATTTGGGCCAAGATGAGTACTGGTTTACCGGTGCACAT
CACCACTGCGAAGCAAAACTGCCCCATTACTGAGTGCGTGCTTGACATTG
ATATCACGAACAACGTGCCTACCGTCATCAAGCACACCCAGTCCGCCAAC
ACTCGCAAATGGCGAGGCACCAAGGTTTCAGTCACCATCGAGGGCAATTT
GAGCACCTATCGCTCCAAGATTCTGGCGTACATGAGACAAACGGCTGTCA
TAACGCCCTATGCGCAGTTTCATTTCAAGTTTCAGTCCGCCATCGATGCA
GTTGATGCCAAGGATTTTGAAGCCCTTTTCTCTAGACGCACCCACCATAT
GCCGCCCCCGGCTCGTGAGGTGAACTATCATCCGTCCTCTGTTAATCAGC
TCATTGTCAAGGAGCTCGTCGAGCAGGTCAAAGACTCCACAACCCTTGTG
CGTTTTCTCTCCTCTCAGTCCGAGTCCATTCCACGCACACCGGCCGTACG
CCTGATAAACGAGCTGGGCGGCGATTTCACCACCCACATGACTGTCAAAC
AACTCAACCTCAACCACATCAGACAGATTTGCGCCTTACTGCACGAAGCG
CGCTTTGATAAGGCAGACGGCTCTTGTCTTTCTCCAACTGGTGAGTACAA
TCTGCCTCTGGGTATCACGAAGGAACTGAAACCCAACCTTGTTGCCACGC
ATGCGGAGCCAGCAGATGTATTCGAGGGGCACCCGCTTATCGTAGAAGCC
GGCGTCACACTAGGAGGCTCCGGCACGAAGCCAGGTATCAATATCTACCG
CTTTGCCACCGGCATTCCGCTCTTGTTTGAGGCTGGTAATGACGTTGTCA
CCAAGACTGCCCGCGACTCGATTCGATGGAACAACTACAAGATCTCGCCC
ACTACCGATCGCATTGGTGTCACGTATTTCCCTGGCTTTCGTTCGGATGC
CTGA
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Coding sequence (CDS) from alignment at tig00000096_pilon:290494..292047+

>Ggra6347.t1 ID=Ggra6347.t1|Name=Ggra6347.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1425bp|location=Sequence derived from alignment at tig00000096_pilon:290494..292047+ (Gracilaria gracilis GNS1m male)
ATGCCGCTGAGGAAACGCAAGCAGCCAAGCGTGGCGGCAAGCGGCGCCGC
CGCTGCCGCGCCCGCCAAGTCGCCCAAGCGCGCGCGCGTGCGCAAGCACA
CCGCAGAGCCCTCTTCCGCGCGCAATGCGAAGCTCAAGTTCAAGTCGCCT
GCTGAGTTCTTCGCTGTACACCACCATCCGGGAGCTGGTGGAGAACGCGC
TCGATGCCGCCGAGGCTATCAACCAGTTGCCGTATGTGTCCCTGTGCTGC
AGCGCATATCGCGCTCGCAGTTCCGTTCCATGCTGAGCATGGATGCCGCC
CGTACGCGCGTCGATCACTCGCTGTATGAGGATGTGGAAAGCGTCAAGGA
GAGAAAGGCCAGGGAGGCCAAGGAGAAACGACTTGCCAAACGAGCTGCTG
CTGCTAATGCGTCCGACTCGCAGCCGTCCGCGAAGGGCAGCAAACAACAC
CGAGCGCTTTCCAACGACGTGTTTCGCCTCACCGTCGAGGATAAGTGCAG
CGGCATGGCGCATCACGATGTGCCCAACATGATGGGGCGCGTGCTGGCCG
GAACAAAGTTCTCTGTGCGACAGGCCAGAAGCAATTTCGGTCTCGGCTCC
AAGATGGCACTCATTTGGGCCAAGATGAGTACTGGTTTACCGGTGCACAT
CACCACTGCGAAGCAAAACTGCCCCATTACTGAGTGCGTGCTTGACATTG
ATATCACGAACAACGTGCCTACCGTCATCAAGCACACCCAGTCCGCCAAC
ACTCGCAAATGGCGAGGCACCAAGGTTTCAGTCACCATCGAGGGCAATTT
GAGCACCTATCGCTCCAAGATTCTGGCGTACATGAGACAAACGGCTGTCA
TAACGCCCTATGCGCAGTTTCATTTCAAGTTTCAGTCCGCCATCGATGCA
GTTGATGCCAAGGATTTTGAAGCCCTTTTCTCTAGACGCACCCACCATAT
GCCGCCCCCGGCTCGTGAGGTGAACTATCATCCGTCCTCTGTTAATCAGC
TCATTGTCAAGGAGCTCGTCGAGCAGGTCAAAGACTCCACAACCCTTATT
TGCGCCTTACTGCACGAAGCGCGCTTTGATAAGGCAGACGGCTCTTGTCT
TTCTCCAACTGGTGAGTACAATCTGCCTCTGGGTATCACGAAGGAACTGA
AACCCAACCTTGTTGCCACGCATGCGGAGCCAGCAGATGTATTCGAGGGG
CACCCGCTTATCGTAGAAGCCGGCGTCACACTAGGAGGCTCCGGCACGAA
GCCAGGTATCAATATCTACCGCTTTGCCACCGGCATTCCGCTCTTGTTTG
AGGCTGGTAATGACGTTGTCACCAAGACTGCCCGCGACTCGATTCGATGG
AACAACTACAAGATCTCGCCCACTACCGATCGCATTGGTGTCACGTATTT
CCCTGGCTTTCGTTCGGATGCCTGA
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