Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 1121481.AUAS01000018_gene466 |
| PFAMs | Peripla_BP_2 |
| Max annot lvl | 976|Bacteroidetes |
| KEGG ko | ko:K02016 |
| KEGG TC | 3.A.1.14 |
| KEGG Pathway | ko02010,map02010 |
| KEGG Module | M00240 |
| Evalue | 5.61e-25 |
| EggNOG OGs | COG0614@1|root,COG0614@2|Bacteria,4NH9F@976|Bacteroidetes,47MZX@768503|Cytophagia |
| Description | PFAM periplasmic binding protein |
| COG category | P |
| BRITE | ko00000,ko00001,ko00002,ko02000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10647.t1.stop1 | Ggra10647.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000095_pilon 127227..127229 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10647.t1.start1 | Ggra10647.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000095_pilon 129063..129065 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra10647.t1 ID=Ggra10647.t1|Name=Ggra10647.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=613bp
MEQIANFKRLSILLLYILLSAWQNRTVFARSQNCVSPVSCDENTDYFSKN
KRIAIEYAIETIRDVAFFNTYVDFTGRGLSEDELYKYRIIVCGCPLPKNS
DDRIILYSNPKSIYVNESPSLALLHFLQPTLESLSYVNTAAYIYTPAIRE
KVARKETAEITNSNFVTDYSILAKDDSLSGSLIGTFTASDYMKEAKDVPF
IVIAESSETSPLARAEWMKIVGLYLGLSEKANERFEKVVREYEKAKKKAL
EAGRRPSVLLNYPTPKGPIDLSNSPDDNYDWFLPYRDQYTTDLISDANAD
YRYENVISEMSIQKKISEVVRDFGSARFLLLAGTFPADAKRDTLEEFMDA
VVSPLQPDSKARKQFEGLSSVRCGKVWGRERRITEDGMANDYFESGVFQP
DEILKDLVNILHPNVDFGGRETYYMHSYKPETSKYTSNCPYNDFVSKPGS
DEKYVDSLFRVSDRDRFQIEDEWETAIDPQLKQLKLPAAFDILFEQEALE
PSSTLLTLRAKVQDAQETSLGDPEILRGALERSLGTKVDFVKVEDSDQGG
KRGLSRVAIAIIVVVILLLIVIVILYLQRKRRRDNLSNGPIEKIPGAKQE
PWSELEEVNVGY* back to topspliced messenger RNA >Ggra10647.t1 ID=Ggra10647.t1|Name=Ggra10647.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1839bp|location=Sequence derived from alignment at tig00000095_pilon:127227..129065- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGGAGCAAATCGCCAATTTCAAACGTTTGAGTATTCTCCTCCTCTACAT
TTTGCTCTCTGCTTGGCAGAATAGGACTGTGTTTGCTCGTTCACAAAACT
GTGTCAGCCCCGTCTCATGTGACGAGAACACCGACTACTTCTCTAAGAAC
AAAAGGATCGCCATAGAGTATGCAATCGAAACTATTCGAGATGTAGCGTT
TTTCAACACGTACGTCGATTTCACAGGCCGGGGTCTTTCAGAGGATGAAC
TCTACAAATACCGTATTATCGTTTGCGGTTGTCCACTTCCCAAGAATTCT
GATGATCGCATCATCCTCTACTCCAATCCCAAATCTATTTACGTCAACGA
ATCTCCGTCTCTGGCTCTCCTTCATTTTCTTCAACCAACACTTGAATCTT
TGTCATACGTCAACACGGCGGCTTATATATACACGCCTGCTATTCGAGAG
AAGGTGGCTAGAAAAGAGACAGCGGAGATTACGAATTCAAATTTTGTCAC
CGACTATTCAATCCTTGCAAAAGATGATTCCTTGTCCGGTAGCCTCATTG
GGACCTTTACTGCATCGGACTACATGAAGGAAGCTAAAGATGTTCCCTTC
ATTGTCATTGCGGAAAGCTCTGAAACTTCTCCGCTGGCTCGGGCAGAATG
GATGAAGATCGTAGGTCTCTATTTGGGACTGTCTGAGAAGGCTAACGAGC
GATTCGAAAAAGTGGTTCGAGAATATGAAAAAGCCAAAAAGAAGGCACTC
GAGGCTGGAAGACGCCCCTCGGTATTACTTAACTACCCAACGCCAAAGGG
TCCAATTGATTTATCAAACAGTCCAGACGATAATTACGATTGGTTCTTGC
CATATCGCGACCAATACACTACAGACCTAATCAGCGATGCCAATGCTGAC
TATCGGTACGAGAATGTAATTTCGGAAATGTCGATTCAGAAGAAGATATC
AGAAGTGGTCAGAGATTTTGGCTCAGCCCGCTTCCTCCTACTGGCTGGAA
CTTTCCCTGCAGATGCGAAGAGAGATACGCTCGAGGAGTTCATGGACGCT
GTTGTGAGCCCTCTCCAACCTGACTCAAAAGCCCGGAAGCAGTTCGAGGG
GCTGAGTTCTGTTCGATGTGGGAAAGTATGGGGTCGTGAAAGAAGAATTA
CTGAAGATGGAATGGCAAACGACTACTTTGAATCTGGTGTGTTCCAACCA
GACGAAATTTTGAAGGACCTTGTCAATATTCTCCATCCAAATGTTGATTT
CGGGGGGAGAGAAACGTATTACATGCATTCTTACAAACCAGAGACTTCGA
AATATACATCCAATTGCCCATATAACGACTTCGTCTCAAAGCCGGGATCT
GATGAAAAATATGTCGACTCTTTATTTAGAGTCTCAGATCGAGACCGCTT
TCAAATAGAAGACGAATGGGAAACCGCTATTGATCCCCAACTGAAACAGC
TCAAGCTGCCAGCAGCGTTTGACATCCTCTTCGAACAGGAAGCCTTAGAG
CCAAGCTCGACTCTACTTACGTTGCGAGCAAAAGTTCAAGACGCACAAGA
GACAAGCCTCGGAGATCCTGAAATACTTCGAGGGGCACTGGAGAGAAGCT
TAGGTACAAAAGTGGACTTCGTGAAAGTGGAGGACAGTGATCAAGGTGGG
AAACGGGGATTAAGCAGGGTGGCTATCGCTATTATTGTTGTTGTAATTCT
TCTTCTAATTGTGATAGTTATTCTCTATCTACAGAGAAAGAGAAGGCGGG
ATAATCTCAGTAATGGACCCATTGAAAAGATCCCAGGTGCGAAACAAGAA
CCATGGTCCGAACTGGAAGAAGTAAACGTAGGGTACTAA back to topprotein sequence of Ggra10647.t1 >Ggra10647.t1 ID=Ggra10647.t1|Name=Ggra10647.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=613bp
MEQIANFKRLSILLLYILLSAWQNRTVFARSQNCVSPVSCDENTDYFSKN
KRIAIEYAIETIRDVAFFNTYVDFTGRGLSEDELYKYRIIVCGCPLPKNS
DDRIILYSNPKSIYVNESPSLALLHFLQPTLESLSYVNTAAYIYTPAIRE
KVARKETAEITNSNFVTDYSILAKDDSLSGSLIGTFTASDYMKEAKDVPF
IVIAESSETSPLARAEWMKIVGLYLGLSEKANERFEKVVREYEKAKKKAL
EAGRRPSVLLNYPTPKGPIDLSNSPDDNYDWFLPYRDQYTTDLISDANAD
YRYENVISEMSIQKKISEVVRDFGSARFLLLAGTFPADAKRDTLEEFMDA
VVSPLQPDSKARKQFEGLSSVRCGKVWGRERRITEDGMANDYFESGVFQP
DEILKDLVNILHPNVDFGGRETYYMHSYKPETSKYTSNCPYNDFVSKPGS
DEKYVDSLFRVSDRDRFQIEDEWETAIDPQLKQLKLPAAFDILFEQEALE
PSSTLLTLRAKVQDAQETSLGDPEILRGALERSLGTKVDFVKVEDSDQGG
KRGLSRVAIAIIVVVILLLIVIVILYLQRKRRRDNLSNGPIEKIPGAKQE
PWSELEEVNVGY* back to topmRNA from alignment at tig00000095_pilon:127227..129065- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra10647.t1 ID=Ggra10647.t1|Name=Ggra10647.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1839bp|location=Sequence derived from alignment at tig00000095_pilon:127227..129065- (Gracilaria gracilis GNS1m male)
ATGGAGCAAATCGCCAATTTCAAACGTTTGAGTATTCTCCTCCTCTACAT
TTTGCTCTCTGCTTGGCAGAATAGGACTGTGTTTGCTCGTTCACAAAACT
GTGTCAGCCCCGTCTCATGTGACGAGAACACCGACTACTTCTCTAAGAAC
AAAAGGATCGCCATAGAGTATGCAATCGAAACTATTCGAGATGTAGCGTT
TTTCAACACGTACGTCGATTTCACAGGCCGGGGTCTTTCAGAGGATGAAC
TCTACAAATACCGTATTATCGTTTGCGGTTGTCCACTTCCCAAGAATTCT
GATGATCGCATCATCCTCTACTCCAATCCCAAATCTATTTACGTCAACGA
ATCTCCGTCTCTGGCTCTCCTTCATTTTCTTCAACCAACACTTGAATCTT
TGTCATACGTCAACACGGCGGCTTATATATACACGCCTGCTATTCGAGAG
AAGGTGGCTAGAAAAGAGACAGCGGAGATTACGAATTCAAATTTTGTCAC
CGACTATTCAATCCTTGCAAAAGATGATTCCTTGTCCGGTAGCCTCATTG
GGACCTTTACTGCATCGGACTACATGAAGGAAGCTAAAGATGTTCCCTTC
ATTGTCATTGCGGAAAGCTCTGAAACTTCTCCGCTGGCTCGGGCAGAATG
GATGAAGATCGTAGGTCTCTATTTGGGACTGTCTGAGAAGGCTAACGAGC
GATTCGAAAAAGTGGTTCGAGAATATGAAAAAGCCAAAAAGAAGGCACTC
GAGGCTGGAAGACGCCCCTCGGTATTACTTAACTACCCAACGCCAAAGGG
TCCAATTGATTTATCAAACAGTCCAGACGATAATTACGATTGGTTCTTGC
CATATCGCGACCAATACACTACAGACCTAATCAGCGATGCCAATGCTGAC
TATCGGTACGAGAATGTAATTTCGGAAATGTCGATTCAGAAGAAGATATC
AGAAGTGGTCAGAGATTTTGGCTCAGCCCGCTTCCTCCTACTGGCTGGAA
CTTTCCCTGCAGATGCGAAGAGAGATACGCTCGAGGAGTTCATGGACGCT
GTTGTGAGCCCTCTCCAACCTGACTCAAAAGCCCGGAAGCAGTTCGAGGG
GCTGAGTTCTGTTCGATGTGGGAAAGTATGGGGTCGTGAAAGAAGAATTA
CTGAAGATGGAATGGCAAACGACTACTTTGAATCTGGTGTGTTCCAACCA
GACGAAATTTTGAAGGACCTTGTCAATATTCTCCATCCAAATGTTGATTT
CGGGGGGAGAGAAACGTATTACATGCATTCTTACAAACCAGAGACTTCGA
AATATACATCCAATTGCCCATATAACGACTTCGTCTCAAAGCCGGGATCT
GATGAAAAATATGTCGACTCTTTATTTAGAGTCTCAGATCGAGACCGCTT
TCAAATAGAAGACGAATGGGAAACCGCTATTGATCCCCAACTGAAACAGC
TCAAGCTGCCAGCAGCGTTTGACATCCTCTTCGAACAGGAAGCCTTAGAG
CCAAGCTCGACTCTACTTACGTTGCGAGCAAAAGTTCAAGACGCACAAGA
GACAAGCCTCGGAGATCCTGAAATACTTCGAGGGGCACTGGAGAGAAGCT
TAGGTACAAAAGTGGACTTCGTGAAAGTGGAGGACAGTGATCAAGGTGGG
AAACGGGGATTAAGCAGGGTGGCTATCGCTATTATTGTTGTTGTAATTCT
TCTTCTAATTGTGATAGTTATTCTCTATCTACAGAGAAAGAGAAGGCGGG
ATAATCTCAGTAATGGACCCATTGAAAAGATCCCAGGTGCGAAACAAGAA
CCATGGTCCGAACTGGAAGAAGTAAACGTAGGGTACTAA back to topCoding sequence (CDS) from alignment at tig00000095_pilon:127227..129065- >Ggra10647.t1 ID=Ggra10647.t1|Name=Ggra10647.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1839bp|location=Sequence derived from alignment at tig00000095_pilon:127227..129065- (Gracilaria gracilis GNS1m male)
ATGGAGCAAATCGCCAATTTCAAACGTTTGAGTATTCTCCTCCTCTACAT
TTTGCTCTCTGCTTGGCAGAATAGGACTGTGTTTGCTCGTTCACAAAACT
GTGTCAGCCCCGTCTCATGTGACGAGAACACCGACTACTTCTCTAAGAAC
AAAAGGATCGCCATAGAGTATGCAATCGAAACTATTCGAGATGTAGCGTT
TTTCAACACGTACGTCGATTTCACAGGCCGGGGTCTTTCAGAGGATGAAC
TCTACAAATACCGTATTATCGTTTGCGGTTGTCCACTTCCCAAGAATTCT
GATGATCGCATCATCCTCTACTCCAATCCCAAATCTATTTACGTCAACGA
ATCTCCGTCTCTGGCTCTCCTTCATTTTCTTCAACCAACACTTGAATCTT
TGTCATACGTCAACACGGCGGCTTATATATACACGCCTGCTATTCGAGAG
AAGGTGGCTAGAAAAGAGACAGCGGAGATTACGAATTCAAATTTTGTCAC
CGACTATTCAATCCTTGCAAAAGATGATTCCTTGTCCGGTAGCCTCATTG
GGACCTTTACTGCATCGGACTACATGAAGGAAGCTAAAGATGTTCCCTTC
ATTGTCATTGCGGAAAGCTCTGAAACTTCTCCGCTGGCTCGGGCAGAATG
GATGAAGATCGTAGGTCTCTATTTGGGACTGTCTGAGAAGGCTAACGAGC
GATTCGAAAAAGTGGTTCGAGAATATGAAAAAGCCAAAAAGAAGGCACTC
GAGGCTGGAAGACGCCCCTCGGTATTACTTAACTACCCAACGCCAAAGGG
TCCAATTGATTTATCAAACAGTCCAGACGATAATTACGATTGGTTCTTGC
CATATCGCGACCAATACACTACAGACCTAATCAGCGATGCCAATGCTGAC
TATCGGTACGAGAATGTAATTTCGGAAATGTCGATTCAGAAGAAGATATC
AGAAGTGGTCAGAGATTTTGGCTCAGCCCGCTTCCTCCTACTGGCTGGAA
CTTTCCCTGCAGATGCGAAGAGAGATACGCTCGAGGAGTTCATGGACGCT
GTTGTGAGCCCTCTCCAACCTGACTCAAAAGCCCGGAAGCAGTTCGAGGG
GCTGAGTTCTGTTCGATGTGGGAAAGTATGGGGTCGTGAAAGAAGAATTA
CTGAAGATGGAATGGCAAACGACTACTTTGAATCTGGTGTGTTCCAACCA
GACGAAATTTTGAAGGACCTTGTCAATATTCTCCATCCAAATGTTGATTT
CGGGGGGAGAGAAACGTATTACATGCATTCTTACAAACCAGAGACTTCGA
AATATACATCCAATTGCCCATATAACGACTTCGTCTCAAAGCCGGGATCT
GATGAAAAATATGTCGACTCTTTATTTAGAGTCTCAGATCGAGACCGCTT
TCAAATAGAAGACGAATGGGAAACCGCTATTGATCCCCAACTGAAACAGC
TCAAGCTGCCAGCAGCGTTTGACATCCTCTTCGAACAGGAAGCCTTAGAG
CCAAGCTCGACTCTACTTACGTTGCGAGCAAAAGTTCAAGACGCACAAGA
GACAAGCCTCGGAGATCCTGAAATACTTCGAGGGGCACTGGAGAGAAGCT
TAGGTACAAAAGTGGACTTCGTGAAAGTGGAGGACAGTGATCAAGGTGGG
AAACGGGGATTAAGCAGGGTGGCTATCGCTATTATTGTTGTTGTAATTCT
TCTTCTAATTGTGATAGTTATTCTCTATCTACAGAGAAAGAGAAGGCGGG
ATAATCTCAGTAATGGACCCATTGAAAAGATCCCAGGTGCGAAACAAGAA
CCATGGTCCGAACTGGAAGAAGTAAACGTAGGGTACTAA back to top
|