Ggra10647.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10647.t1
Unique Name	Ggra10647.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	613

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000095_pilon	contig	tig00000095_pilon:127227..129065 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1121481.AUAS01000018_gene466
PFAMs	Peripla_BP_2
Max annot lvl	976\|Bacteroidetes
KEGG ko	ko:K02016
KEGG TC	3.A.1.14
KEGG Pathway	ko02010,map02010
KEGG Module	M00240
Evalue	5.61e-25
EggNOG OGs	COG0614@1\|root,COG0614@2\|Bacteria,4NH9F@976\|Bacteroidetes,47MZX@768503\|Cytophagia
Description	PFAM periplasmic binding protein
COG category	P
BRITE	ko00000,ko00001,ko00002,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10647	Ggra10647	Gracilaria gracilis GNS1m male	gene	tig00000095_pilon 127227..129065 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10647.t1.stop1	Ggra10647.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000095_pilon 127227..127229 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10647.t1.CDS1	Ggra10647.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000095_pilon 127227..129065 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10647.t1.exon1	Ggra10647.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000095_pilon 127227..129065 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10647.t1.start1	Ggra10647.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000095_pilon 129063..129065 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10647.t1	Ggra10647.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000095_pilon 127227..129065 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000095_pilon:127227..129065-
coding sequence from alignment at tig00000095_pilon:127227..129065-

mRNA sequence

>Ggra10647.t1 ID=Ggra10647.t1|Name=Ggra10647.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=613bp
MEQIANFKRLSILLLYILLSAWQNRTVFARSQNCVSPVSCDENTDYFSKN
KRIAIEYAIETIRDVAFFNTYVDFTGRGLSEDELYKYRIIVCGCPLPKNS
DDRIILYSNPKSIYVNESPSLALLHFLQPTLESLSYVNTAAYIYTPAIRE
KVARKETAEITNSNFVTDYSILAKDDSLSGSLIGTFTASDYMKEAKDVPF
IVIAESSETSPLARAEWMKIVGLYLGLSEKANERFEKVVREYEKAKKKAL
EAGRRPSVLLNYPTPKGPIDLSNSPDDNYDWFLPYRDQYTTDLISDANAD
YRYENVISEMSIQKKISEVVRDFGSARFLLLAGTFPADAKRDTLEEFMDA
VVSPLQPDSKARKQFEGLSSVRCGKVWGRERRITEDGMANDYFESGVFQP
DEILKDLVNILHPNVDFGGRETYYMHSYKPETSKYTSNCPYNDFVSKPGS
DEKYVDSLFRVSDRDRFQIEDEWETAIDPQLKQLKLPAAFDILFEQEALE
PSSTLLTLRAKVQDAQETSLGDPEILRGALERSLGTKVDFVKVEDSDQGG
KRGLSRVAIAIIVVVILLLIVIVILYLQRKRRRDNLSNGPIEKIPGAKQE
PWSELEEVNVGY*

spliced messenger RNA

>Ggra10647.t1 ID=Ggra10647.t1|Name=Ggra10647.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1839bp|location=Sequence derived from alignment at tig00000095_pilon:127227..129065- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCAAATCGCCAATTTCAAACGTTTGAGTATTCTCCTCCTCTACAT
TTTGCTCTCTGCTTGGCAGAATAGGACTGTGTTTGCTCGTTCACAAAACT
GTGTCAGCCCCGTCTCATGTGACGAGAACACCGACTACTTCTCTAAGAAC
AAAAGGATCGCCATAGAGTATGCAATCGAAACTATTCGAGATGTAGCGTT
TTTCAACACGTACGTCGATTTCACAGGCCGGGGTCTTTCAGAGGATGAAC
TCTACAAATACCGTATTATCGTTTGCGGTTGTCCACTTCCCAAGAATTCT
GATGATCGCATCATCCTCTACTCCAATCCCAAATCTATTTACGTCAACGA
ATCTCCGTCTCTGGCTCTCCTTCATTTTCTTCAACCAACACTTGAATCTT
TGTCATACGTCAACACGGCGGCTTATATATACACGCCTGCTATTCGAGAG
AAGGTGGCTAGAAAAGAGACAGCGGAGATTACGAATTCAAATTTTGTCAC
CGACTATTCAATCCTTGCAAAAGATGATTCCTTGTCCGGTAGCCTCATTG
GGACCTTTACTGCATCGGACTACATGAAGGAAGCTAAAGATGTTCCCTTC
ATTGTCATTGCGGAAAGCTCTGAAACTTCTCCGCTGGCTCGGGCAGAATG
GATGAAGATCGTAGGTCTCTATTTGGGACTGTCTGAGAAGGCTAACGAGC
GATTCGAAAAAGTGGTTCGAGAATATGAAAAAGCCAAAAAGAAGGCACTC
GAGGCTGGAAGACGCCCCTCGGTATTACTTAACTACCCAACGCCAAAGGG
TCCAATTGATTTATCAAACAGTCCAGACGATAATTACGATTGGTTCTTGC
CATATCGCGACCAATACACTACAGACCTAATCAGCGATGCCAATGCTGAC
TATCGGTACGAGAATGTAATTTCGGAAATGTCGATTCAGAAGAAGATATC
AGAAGTGGTCAGAGATTTTGGCTCAGCCCGCTTCCTCCTACTGGCTGGAA
CTTTCCCTGCAGATGCGAAGAGAGATACGCTCGAGGAGTTCATGGACGCT
GTTGTGAGCCCTCTCCAACCTGACTCAAAAGCCCGGAAGCAGTTCGAGGG
GCTGAGTTCTGTTCGATGTGGGAAAGTATGGGGTCGTGAAAGAAGAATTA
CTGAAGATGGAATGGCAAACGACTACTTTGAATCTGGTGTGTTCCAACCA
GACGAAATTTTGAAGGACCTTGTCAATATTCTCCATCCAAATGTTGATTT
CGGGGGGAGAGAAACGTATTACATGCATTCTTACAAACCAGAGACTTCGA
AATATACATCCAATTGCCCATATAACGACTTCGTCTCAAAGCCGGGATCT
GATGAAAAATATGTCGACTCTTTATTTAGAGTCTCAGATCGAGACCGCTT
TCAAATAGAAGACGAATGGGAAACCGCTATTGATCCCCAACTGAAACAGC
TCAAGCTGCCAGCAGCGTTTGACATCCTCTTCGAACAGGAAGCCTTAGAG
CCAAGCTCGACTCTACTTACGTTGCGAGCAAAAGTTCAAGACGCACAAGA
GACAAGCCTCGGAGATCCTGAAATACTTCGAGGGGCACTGGAGAGAAGCT
TAGGTACAAAAGTGGACTTCGTGAAAGTGGAGGACAGTGATCAAGGTGGG
AAACGGGGATTAAGCAGGGTGGCTATCGCTATTATTGTTGTTGTAATTCT
TCTTCTAATTGTGATAGTTATTCTCTATCTACAGAGAAAGAGAAGGCGGG
ATAATCTCAGTAATGGACCCATTGAAAAGATCCCAGGTGCGAAACAAGAA
CCATGGTCCGAACTGGAAGAAGTAAACGTAGGGTACTAA

protein sequence of Ggra10647.t1

>Ggra10647.t1 ID=Ggra10647.t1|Name=Ggra10647.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=613bp
MEQIANFKRLSILLLYILLSAWQNRTVFARSQNCVSPVSCDENTDYFSKN
KRIAIEYAIETIRDVAFFNTYVDFTGRGLSEDELYKYRIIVCGCPLPKNS
DDRIILYSNPKSIYVNESPSLALLHFLQPTLESLSYVNTAAYIYTPAIRE
KVARKETAEITNSNFVTDYSILAKDDSLSGSLIGTFTASDYMKEAKDVPF
IVIAESSETSPLARAEWMKIVGLYLGLSEKANERFEKVVREYEKAKKKAL
EAGRRPSVLLNYPTPKGPIDLSNSPDDNYDWFLPYRDQYTTDLISDANAD
YRYENVISEMSIQKKISEVVRDFGSARFLLLAGTFPADAKRDTLEEFMDA
VVSPLQPDSKARKQFEGLSSVRCGKVWGRERRITEDGMANDYFESGVFQP
DEILKDLVNILHPNVDFGGRETYYMHSYKPETSKYTSNCPYNDFVSKPGS
DEKYVDSLFRVSDRDRFQIEDEWETAIDPQLKQLKLPAAFDILFEQEALE
PSSTLLTLRAKVQDAQETSLGDPEILRGALERSLGTKVDFVKVEDSDQGG
KRGLSRVAIAIIVVVILLLIVIVILYLQRKRRRDNLSNGPIEKIPGAKQE
PWSELEEVNVGY*

mRNA from alignment at tig00000095_pilon:127227..129065-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10647.t1 ID=Ggra10647.t1|Name=Ggra10647.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1839bp|location=Sequence derived from alignment at tig00000095_pilon:127227..129065- (Gracilaria gracilis GNS1m male)
ATGGAGCAAATCGCCAATTTCAAACGTTTGAGTATTCTCCTCCTCTACAT
TTTGCTCTCTGCTTGGCAGAATAGGACTGTGTTTGCTCGTTCACAAAACT
GTGTCAGCCCCGTCTCATGTGACGAGAACACCGACTACTTCTCTAAGAAC
AAAAGGATCGCCATAGAGTATGCAATCGAAACTATTCGAGATGTAGCGTT
TTTCAACACGTACGTCGATTTCACAGGCCGGGGTCTTTCAGAGGATGAAC
TCTACAAATACCGTATTATCGTTTGCGGTTGTCCACTTCCCAAGAATTCT
GATGATCGCATCATCCTCTACTCCAATCCCAAATCTATTTACGTCAACGA
ATCTCCGTCTCTGGCTCTCCTTCATTTTCTTCAACCAACACTTGAATCTT
TGTCATACGTCAACACGGCGGCTTATATATACACGCCTGCTATTCGAGAG
AAGGTGGCTAGAAAAGAGACAGCGGAGATTACGAATTCAAATTTTGTCAC
CGACTATTCAATCCTTGCAAAAGATGATTCCTTGTCCGGTAGCCTCATTG
GGACCTTTACTGCATCGGACTACATGAAGGAAGCTAAAGATGTTCCCTTC
ATTGTCATTGCGGAAAGCTCTGAAACTTCTCCGCTGGCTCGGGCAGAATG
GATGAAGATCGTAGGTCTCTATTTGGGACTGTCTGAGAAGGCTAACGAGC
GATTCGAAAAAGTGGTTCGAGAATATGAAAAAGCCAAAAAGAAGGCACTC
GAGGCTGGAAGACGCCCCTCGGTATTACTTAACTACCCAACGCCAAAGGG
TCCAATTGATTTATCAAACAGTCCAGACGATAATTACGATTGGTTCTTGC
CATATCGCGACCAATACACTACAGACCTAATCAGCGATGCCAATGCTGAC
TATCGGTACGAGAATGTAATTTCGGAAATGTCGATTCAGAAGAAGATATC
AGAAGTGGTCAGAGATTTTGGCTCAGCCCGCTTCCTCCTACTGGCTGGAA
CTTTCCCTGCAGATGCGAAGAGAGATACGCTCGAGGAGTTCATGGACGCT
GTTGTGAGCCCTCTCCAACCTGACTCAAAAGCCCGGAAGCAGTTCGAGGG
GCTGAGTTCTGTTCGATGTGGGAAAGTATGGGGTCGTGAAAGAAGAATTA
CTGAAGATGGAATGGCAAACGACTACTTTGAATCTGGTGTGTTCCAACCA
GACGAAATTTTGAAGGACCTTGTCAATATTCTCCATCCAAATGTTGATTT
CGGGGGGAGAGAAACGTATTACATGCATTCTTACAAACCAGAGACTTCGA
AATATACATCCAATTGCCCATATAACGACTTCGTCTCAAAGCCGGGATCT
GATGAAAAATATGTCGACTCTTTATTTAGAGTCTCAGATCGAGACCGCTT
TCAAATAGAAGACGAATGGGAAACCGCTATTGATCCCCAACTGAAACAGC
TCAAGCTGCCAGCAGCGTTTGACATCCTCTTCGAACAGGAAGCCTTAGAG
CCAAGCTCGACTCTACTTACGTTGCGAGCAAAAGTTCAAGACGCACAAGA
GACAAGCCTCGGAGATCCTGAAATACTTCGAGGGGCACTGGAGAGAAGCT
TAGGTACAAAAGTGGACTTCGTGAAAGTGGAGGACAGTGATCAAGGTGGG
AAACGGGGATTAAGCAGGGTGGCTATCGCTATTATTGTTGTTGTAATTCT
TCTTCTAATTGTGATAGTTATTCTCTATCTACAGAGAAAGAGAAGGCGGG
ATAATCTCAGTAATGGACCCATTGAAAAGATCCCAGGTGCGAAACAAGAA
CCATGGTCCGAACTGGAAGAAGTAAACGTAGGGTACTAA

Coding sequence (CDS) from alignment at tig00000095_pilon:127227..129065-

>Ggra10647.t1 ID=Ggra10647.t1|Name=Ggra10647.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1839bp|location=Sequence derived from alignment at tig00000095_pilon:127227..129065- (Gracilaria gracilis GNS1m male)
ATGGAGCAAATCGCCAATTTCAAACGTTTGAGTATTCTCCTCCTCTACAT
TTTGCTCTCTGCTTGGCAGAATAGGACTGTGTTTGCTCGTTCACAAAACT
GTGTCAGCCCCGTCTCATGTGACGAGAACACCGACTACTTCTCTAAGAAC
AAAAGGATCGCCATAGAGTATGCAATCGAAACTATTCGAGATGTAGCGTT
TTTCAACACGTACGTCGATTTCACAGGCCGGGGTCTTTCAGAGGATGAAC
TCTACAAATACCGTATTATCGTTTGCGGTTGTCCACTTCCCAAGAATTCT
GATGATCGCATCATCCTCTACTCCAATCCCAAATCTATTTACGTCAACGA
ATCTCCGTCTCTGGCTCTCCTTCATTTTCTTCAACCAACACTTGAATCTT
TGTCATACGTCAACACGGCGGCTTATATATACACGCCTGCTATTCGAGAG
AAGGTGGCTAGAAAAGAGACAGCGGAGATTACGAATTCAAATTTTGTCAC
CGACTATTCAATCCTTGCAAAAGATGATTCCTTGTCCGGTAGCCTCATTG
GGACCTTTACTGCATCGGACTACATGAAGGAAGCTAAAGATGTTCCCTTC
ATTGTCATTGCGGAAAGCTCTGAAACTTCTCCGCTGGCTCGGGCAGAATG
GATGAAGATCGTAGGTCTCTATTTGGGACTGTCTGAGAAGGCTAACGAGC
GATTCGAAAAAGTGGTTCGAGAATATGAAAAAGCCAAAAAGAAGGCACTC
GAGGCTGGAAGACGCCCCTCGGTATTACTTAACTACCCAACGCCAAAGGG
TCCAATTGATTTATCAAACAGTCCAGACGATAATTACGATTGGTTCTTGC
CATATCGCGACCAATACACTACAGACCTAATCAGCGATGCCAATGCTGAC
TATCGGTACGAGAATGTAATTTCGGAAATGTCGATTCAGAAGAAGATATC
AGAAGTGGTCAGAGATTTTGGCTCAGCCCGCTTCCTCCTACTGGCTGGAA
CTTTCCCTGCAGATGCGAAGAGAGATACGCTCGAGGAGTTCATGGACGCT
GTTGTGAGCCCTCTCCAACCTGACTCAAAAGCCCGGAAGCAGTTCGAGGG
GCTGAGTTCTGTTCGATGTGGGAAAGTATGGGGTCGTGAAAGAAGAATTA
CTGAAGATGGAATGGCAAACGACTACTTTGAATCTGGTGTGTTCCAACCA
GACGAAATTTTGAAGGACCTTGTCAATATTCTCCATCCAAATGTTGATTT
CGGGGGGAGAGAAACGTATTACATGCATTCTTACAAACCAGAGACTTCGA
AATATACATCCAATTGCCCATATAACGACTTCGTCTCAAAGCCGGGATCT
GATGAAAAATATGTCGACTCTTTATTTAGAGTCTCAGATCGAGACCGCTT
TCAAATAGAAGACGAATGGGAAACCGCTATTGATCCCCAACTGAAACAGC
TCAAGCTGCCAGCAGCGTTTGACATCCTCTTCGAACAGGAAGCCTTAGAG
CCAAGCTCGACTCTACTTACGTTGCGAGCAAAAGTTCAAGACGCACAAGA
GACAAGCCTCGGAGATCCTGAAATACTTCGAGGGGCACTGGAGAGAAGCT
TAGGTACAAAAGTGGACTTCGTGAAAGTGGAGGACAGTGATCAAGGTGGG
AAACGGGGATTAAGCAGGGTGGCTATCGCTATTATTGTTGTTGTAATTCT
TCTTCTAATTGTGATAGTTATTCTCTATCTACAGAGAAAGAGAAGGCGGG
ATAATCTCAGTAATGGACCCATTGAAAAGATCCCAGGTGCGAAACAAGAA
CCATGGTCCGAACTGGAAGAAGTAAACGTAGGGTACTAA