Ggra7769.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7769.t1
Unique NameGgra7769.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length496
Homology
BLAST of Ggra7769.t1 vs. uniprot
Match: A0A2V3IWN5 (ELL domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWN5_9FLOR)

HSP 1 Score: 372 bits (954), Expect = 1.210e-120
Identity = 226/503 (44.93%), Postives = 326/503 (64.81%), Query Frame = 0
Query:    1 MANRPTYLPPLSPSARSHPHHHTDVPTLQSYPVKLSADVVNALLNGEG-ACIEFTHDEQGKIYIPNREDITFTTRAITADNADTSRAALYSRRANNLRLVGPINHEMEIDRFPNQR---SIAPKKRPVSSRNPTKREVKTSDGSEHASAPKPRARKATEKRPRAPPRQPAANATNANNTPA---------FRIPRSVP--APLAPSLRSAPASPTENGRHSAPKRSAPAARNSMGSLGVRRISPPSSTQLPKPVSRQTPTKARQSPHSSSRGPSPNVHSPSSPRVSSRAKLDDPEDVRRHLVHSLALGDMTMKAIRCRHEARNMDMASPVLDGALGEVAEKTGSTYRLKKRSWREVYDDYTDYNGTEKRMMTQNRFKVGG-VDGKLGMEVMNDDLLNNDVSDFVKLIDRSAAESKDVEDDDKLRENYVKGYKLYCELVDRLAVVATKFRRLQDKWVTSGET-GKPHVSLLIQSANKAHSERFFRFHRVLPKIHGYLKQVRQAV 486
            + + PTYLPPLSPSA+ HPHH +  P  Q+Y +KLS+DV NA+L G+  A IEFT  +QG I++PN  D++F TR   A++ +T+RAALYSRR NN+RLV P+++EM+I +    R   +I     P+  R  TKR+ K ++ S+     +PR+R   +  PR     P  N+T    TP+          ++PRS P  APL  + RS    PT+NG+ S  +RS  ++ +S+G+L  +R SPPS+TQLP P+ R  PTK+RQ+P + SRG SPN  + S   + ++ KL D E++RRH+VHSLALGDMT+ A+R RHE+RNMD A  VLD  L +VA+ TG  YRLKKR+WREVYD Y++Y+   +++M QNR +V G VDGKL  E MNDD L  ++++  K   +   E ++ ED+   R NY + + LY E++DR+++V  KF  L+++  T  E+ GK  V   I+S ++ + E F RF RVLPK+HG+LK +++AV
Sbjct:   11 LPHSPTYLPPLSPSAKCHPHHASGTPVPQTYQLKLSSDVFNAILKGQDQATIEFTELDQGTIHLPNHADVSFNTRPTPANDDETARAALYSRRGNNMRLVAPVHYEMDIHKHTTPRRKVNIG----PLPKRGKTKRDSKPNEDSQRPPK-RPRSRIPVQC-PRG--ESPTRNSTALPATPSQSHKANGSVIQVPRSGPINAPLRSTSRSP---PTQNGKQSGTQRSMKSSISSIGALR-QRFSPPSTTQLPGPIGRAAPTKSRQAPQTISRGGSPNTQTGSGAGLGAKPKLKDSEEIRRHVVHSLALGDMTLNAMRRRHESRNMDSA--VLDEVLKDVADVTGDNYRLKKRAWREVYDSYSEYSDMNRKLMRQNRVQVCGLVDGKLRAEFMNDDALQEEINELSKQFSKGVYEVENDEDERLARRNYERVHVLYGEVIDRMSMVNGKFVELRERLETCTESSGKEEVKNTIRSCDRRYGESFKRFERVLPKMHGFLKGIQEAV 499          
BLAST of Ggra7769.t1 vs. uniprot
Match: R7QEU7 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEU7_CHOCR)

HSP 1 Score: 137 bits (344), Expect = 8.370e-31
Identity = 151/519 (29.09%), Postives = 242/519 (46.63%), Query Frame = 0
Query:    4 RPTYLPPLSPSARSHPHHHTDVPTLQSYPVKLSADVVNALLNGEGACIEFTH--DEQGKIYIPNREDITFTTRAITADNADTSRAALYSRRANNLRLVGPINHEMEIDRFPN-QRSIAPKKRPVSSRNPTK-REVKTSDGSEHASAPKPRARKAT-EKRPRAPPRQPAANAT-------NANNTPAFRIP--RSVPAPLAPSLRSAPASPTENGRHSAPKRSAPAARNSMGSLG--------VRRISPPSSTQLPKPVSRQTPTKARQSPHSSSR-GPSP-NVHSPSSPRVSS-RAKLDDPEDVRRHLVHSLALGDMTMKAIRCRH-EARNMDMASPVLDGALGEVAEKTGSTYRLKKRSWREVYDDYTDYNGTEKRMMTQNRFKVGGVDGKLGME-----VMNDDLLNNDVSDFVKL-IDRSAAESKDVEDDDKLRENYVKGYKLYCELVDRLAVVATKFRRLQDKWVTSGETGKPHVSLL--IQSANKAHSERFFRFHRVLPKIHGYLKQVRQAVER 488
            R  YLPP+S SA       +D      + VKL+ ++V+ L+ G        H  +    + +PN +   FT R I  +  D+ RA  YSR A +LR VGPI  +++++R  +   S   K R    R+ +K R +K +D      AP  R R+ T EKRPR  P+ P ++         +ANNTP    P  R    P A    SA   P+     SAP+R +P   + M  L           R+ P +ST         TP K R SP+ S R  P P + HSPSSP+  + RAK +D +++R +++H LA       ++  R  E+         L   L EVA      Y L+   W ++ +DY +Y   E+  M   R +   V+G   +      VM D  L++++  F K   D +  +     ++ + R+ + K Y LY E+++RL  ++  F+ L  ++     + +   S++  I +A + H +R      VLP +HG L+ +R A+++
Sbjct:  212 RSLYLPPISTSANIKDGSPSDSAQPVVFAVKLTEEMVSTLVAGAATDDASIHLAESHAVLNMPNHDPFKFTLRPI-GEGDDSRRAVCYSRNATDLRAVGPIVADLDLERANSVDASSVAKIRAADERDKSKKRGMKLADDI----APTARKRRKTVEKRPRPAPKMPKSSPIVSPGRGHSANNTPPRARPNGRXXXTPTA----SAAVPPS-----SAPRRISPQTNSQMSGLFGNGNLPEMTERVRPGASTTRRS----VTPPKFRSSPYGSRRTSPLPTSAHSPSSPKTGNLRAKSEDIDELRVNVMHILASHPRAFHSLSSRVIESDAPPEVKEDLKSVLQEVATCKDGIYTLRGHCWAKISEDYQEYTHAERTQMRIARSEWDSVNGTNDVRSITDGVMTDAQLDSEIRSFQKAKTDDNVGKISSEREEKEFRKTFEKWYPLYAEVINRLEKMSKMFKSLDSRF-KERRSAEERDSIVKRITTAYEKHKKRREELITVLPLLHGNLRSIRSALDK 711          
The following BLAST results are available for this feature:
BLAST of Ggra7769.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IWN51.210e-12044.93ELL domain-containing protein n=1 Tax=Gracilariops... [more]
R7QEU78.370e-3129.09Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019464RNA polymerase II elongation factor ELL, N-terminalPFAMPF10390ELLcoord: 46..360
e-value: 1.6E-7
score: 31.2
IPR042065E3 ubiquitin-protein ligase ELL-likeGENE3D1.10.10.2670coord: 275..363
e-value: 8.7E-8
score: 34.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 126..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..282
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..271
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 281..358

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:421748..423235 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7769.t1Ggra7769.t1Gracilaria gracilis GNS1m malemRNAtig00000088_pilon 421748..423235 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7769.t1 ID=Ggra7769.t1|Name=Ggra7769.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=496bp
MANRPTYLPPLSPSARSHPHHHTDVPTLQSYPVKLSADVVNALLNGEGAC
IEFTHDEQGKIYIPNREDITFTTRAITADNADTSRAALYSRRANNLRLVG
PINHEMEIDRFPNQRSIAPKKRPVSSRNPTKREVKTSDGSEHASAPKPRA
RKATEKRPRAPPRQPAANATNANNTPAFRIPRSVPAPLAPSLRSAPASPT
ENGRHSAPKRSAPAARNSMGSLGVRRISPPSSTQLPKPVSRQTPTKARQS
PHSSSRGPSPNVHSPSSPRVSSRAKLDDPEDVRRHLVHSLALGDMTMKAI
RCRHEARNMDMASPVLDGALGEVAEKTGSTYRLKKRSWREVYDDYTDYNG
TEKRMMTQNRFKVGGVDGKLGMEVMNDDLLNNDVSDFVKLIDRSAAESKD
VEDDDKLRENYVKGYKLYCELVDRLAVVATKFRRLQDKWVTSGETGKPHV
SLLIQSANKAHSERFFRFHRVLPKIHGYLKQVRQAVERHGQQWVA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019464ELL_N
IPR042065E3_ELL-like
IPR036390WH_DNA-bd_sf