Ggra7769.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7769.t1
Unique Name	Ggra7769.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	496

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000088_pilon	contig	tig00000088_pilon:421748..423235 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7769	Ggra7769	Gracilaria gracilis GNS1m male	gene	tig00000088_pilon 421748..423235 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7769.t1.start1	Ggra7769.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000088_pilon 421748..421750 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7769.t1.CDS1	Ggra7769.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000088_pilon 421748..423235 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7769.t1.exon1	Ggra7769.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000088_pilon 421748..423235 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7769.t1.stop1	Ggra7769.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000088_pilon 423233..423235 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7769.t1	Ggra7769.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000088_pilon 421748..423235 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000088_pilon:421748..423235+
coding sequence from alignment at tig00000088_pilon:421748..423235+

mRNA sequence

>Ggra7769.t1 ID=Ggra7769.t1|Name=Ggra7769.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=496bp
MANRPTYLPPLSPSARSHPHHHTDVPTLQSYPVKLSADVVNALLNGEGAC
IEFTHDEQGKIYIPNREDITFTTRAITADNADTSRAALYSRRANNLRLVG
PINHEMEIDRFPNQRSIAPKKRPVSSRNPTKREVKTSDGSEHASAPKPRA
RKATEKRPRAPPRQPAANATNANNTPAFRIPRSVPAPLAPSLRSAPASPT
ENGRHSAPKRSAPAARNSMGSLGVRRISPPSSTQLPKPVSRQTPTKARQS
PHSSSRGPSPNVHSPSSPRVSSRAKLDDPEDVRRHLVHSLALGDMTMKAI
RCRHEARNMDMASPVLDGALGEVAEKTGSTYRLKKRSWREVYDDYTDYNG
TEKRMMTQNRFKVGGVDGKLGMEVMNDDLLNNDVSDFVKLIDRSAAESKD
VEDDDKLRENYVKGYKLYCELVDRLAVVATKFRRLQDKWVTSGETGKPHV
SLLIQSANKAHSERFFRFHRVLPKIHGYLKQVRQAVERHGQQWVA*

spliced messenger RNA

>Ggra7769.t1 ID=Ggra7769.t1|Name=Ggra7769.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00000088_pilon:421748..423235+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAACCGGCCCACGTATTTGCCGCCACTTTCACCGTCGGCCAGATC
TCACCCGCACCATCACACCGACGTCCCCACACTACAGAGCTACCCAGTCA
AGCTCTCCGCCGACGTGGTCAATGCTCTGCTCAACGGAGAGGGGGCCTGC
ATCGAGTTCACTCACGATGAGCAGGGCAAGATTTATATCCCCAACCGTGA
GGATATTACCTTCACCACACGCGCCATCACAGCCGACAACGCCGACACCT
CGCGCGCAGCCCTCTATTCACGGAGAGCCAACAACTTGCGACTGGTTGGA
CCCATCAATCATGAGATGGAAATCGACCGCTTCCCCAACCAGCGCTCGAT
TGCTCCGAAGAAGCGCCCCGTCTCCTCGCGCAACCCCACAAAGCGCGAGG
TGAAGACGTCGGACGGCTCGGAGCACGCATCGGCCCCCAAGCCGCGTGCG
CGAAAAGCTACCGAGAAGCGTCCGCGAGCGCCTCCGCGTCAACCGGCTGC
GAACGCCACCAACGCCAACAACACGCCCGCCTTCCGGATACCGCGTAGCG
TTCCCGCTCCGCTGGCGCCGTCGTTGCGATCTGCGCCTGCGTCGCCCACG
GAGAATGGTCGCCATTCTGCGCCGAAACGCTCTGCCCCCGCCGCTCGCAA
TTCGATGGGGTCGCTTGGTGTGCGACGCATCTCACCGCCTTCGAGCACGC
AATTGCCGAAGCCGGTGTCACGACAGACGCCCACGAAAGCACGTCAGTCA
CCGCACTCGAGTTCGAGAGGGCCTTCGCCCAATGTGCACTCTCCGAGCAG
CCCGCGTGTGAGCAGCCGCGCCAAGTTGGACGATCCGGAAGACGTCCGTC
GTCATTTGGTGCACTCGTTGGCGCTGGGCGATATGACGATGAAGGCTATA
CGCTGTCGTCATGAGGCGCGCAACATGGACATGGCAAGCCCCGTGCTGGA
TGGTGCGCTCGGCGAAGTGGCGGAGAAGACCGGTAGCACATACCGGTTGA
AGAAGCGGTCGTGGCGGGAAGTCTACGATGACTATACCGACTACAACGGC
ACGGAAAAGAGAATGATGACGCAAAATCGCTTCAAAGTCGGTGGCGTCGA
CGGCAAGCTGGGCATGGAGGTCATGAATGATGACCTGTTGAACAATGACG
TGAGTGATTTTGTGAAGCTGATAGACAGGTCTGCAGCCGAGTCAAAGGAT
GTGGAGGACGACGACAAGCTGCGCGAGAACTACGTTAAAGGGTACAAGCT
TTACTGCGAGCTGGTGGATAGACTCGCCGTTGTCGCGACCAAGTTCCGAC
GGCTGCAAGACAAGTGGGTAACAAGCGGTGAAACCGGGAAACCGCACGTG
AGTTTGTTGATTCAATCCGCGAACAAGGCACATAGCGAGCGGTTCTTTCG
GTTTCACCGCGTTCTGCCAAAGATACATGGATACCTGAAACAGGTTCGAC
AGGCAGTAGAAAGGCATGGGCAGCAGTGGGTGGCGTAG

protein sequence of Ggra7769.t1

>Ggra7769.t1 ID=Ggra7769.t1|Name=Ggra7769.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=496bp
MANRPTYLPPLSPSARSHPHHHTDVPTLQSYPVKLSADVVNALLNGEGAC
IEFTHDEQGKIYIPNREDITFTTRAITADNADTSRAALYSRRANNLRLVG
PINHEMEIDRFPNQRSIAPKKRPVSSRNPTKREVKTSDGSEHASAPKPRA
RKATEKRPRAPPRQPAANATNANNTPAFRIPRSVPAPLAPSLRSAPASPT
ENGRHSAPKRSAPAARNSMGSLGVRRISPPSSTQLPKPVSRQTPTKARQS
PHSSSRGPSPNVHSPSSPRVSSRAKLDDPEDVRRHLVHSLALGDMTMKAI
RCRHEARNMDMASPVLDGALGEVAEKTGSTYRLKKRSWREVYDDYTDYNG
TEKRMMTQNRFKVGGVDGKLGMEVMNDDLLNNDVSDFVKLIDRSAAESKD
VEDDDKLRENYVKGYKLYCELVDRLAVVATKFRRLQDKWVTSGETGKPHV
SLLIQSANKAHSERFFRFHRVLPKIHGYLKQVRQAVERHGQQWVA*

mRNA from alignment at tig00000088_pilon:421748..423235+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7769.t1 ID=Ggra7769.t1|Name=Ggra7769.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1488bp|location=Sequence derived from alignment at tig00000088_pilon:421748..423235+ (Gracilaria gracilis GNS1m male)
ATGGCCAACCGGCCCACGTATTTGCCGCCACTTTCACCGTCGGCCAGATC
TCACCCGCACCATCACACCGACGTCCCCACACTACAGAGCTACCCAGTCA
AGCTCTCCGCCGACGTGGTCAATGCTCTGCTCAACGGAGAGGGGGCCTGC
ATCGAGTTCACTCACGATGAGCAGGGCAAGATTTATATCCCCAACCGTGA
GGATATTACCTTCACCACACGCGCCATCACAGCCGACAACGCCGACACCT
CGCGCGCAGCCCTCTATTCACGGAGAGCCAACAACTTGCGACTGGTTGGA
CCCATCAATCATGAGATGGAAATCGACCGCTTCCCCAACCAGCGCTCGAT
TGCTCCGAAGAAGCGCCCCGTCTCCTCGCGCAACCCCACAAAGCGCGAGG
TGAAGACGTCGGACGGCTCGGAGCACGCATCGGCCCCCAAGCCGCGTGCG
CGAAAAGCTACCGAGAAGCGTCCGCGAGCGCCTCCGCGTCAACCGGCTGC
GAACGCCACCAACGCCAACAACACGCCCGCCTTCCGGATACCGCGTAGCG
TTCCCGCTCCGCTGGCGCCGTCGTTGCGATCTGCGCCTGCGTCGCCCACG
GAGAATGGTCGCCATTCTGCGCCGAAACGCTCTGCCCCCGCCGCTCGCAA
TTCGATGGGGTCGCTTGGTGTGCGACGCATCTCACCGCCTTCGAGCACGC
AATTGCCGAAGCCGGTGTCACGACAGACGCCCACGAAAGCACGTCAGTCA
CCGCACTCGAGTTCGAGAGGGCCTTCGCCCAATGTGCACTCTCCGAGCAG
CCCGCGTGTGAGCAGCCGCGCCAAGTTGGACGATCCGGAAGACGTCCGTC
GTCATTTGGTGCACTCGTTGGCGCTGGGCGATATGACGATGAAGGCTATA
CGCTGTCGTCATGAGGCGCGCAACATGGACATGGCAAGCCCCGTGCTGGA
TGGTGCGCTCGGCGAAGTGGCGGAGAAGACCGGTAGCACATACCGGTTGA
AGAAGCGGTCGTGGCGGGAAGTCTACGATGACTATACCGACTACAACGGC
ACGGAAAAGAGAATGATGACGCAAAATCGCTTCAAAGTCGGTGGCGTCGA
CGGCAAGCTGGGCATGGAGGTCATGAATGATGACCTGTTGAACAATGACG
TGAGTGATTTTGTGAAGCTGATAGACAGGTCTGCAGCCGAGTCAAAGGAT
GTGGAGGACGACGACAAGCTGCGCGAGAACTACGTTAAAGGGTACAAGCT
TTACTGCGAGCTGGTGGATAGACTCGCCGTTGTCGCGACCAAGTTCCGAC
GGCTGCAAGACAAGTGGGTAACAAGCGGTGAAACCGGGAAACCGCACGTG
AGTTTGTTGATTCAATCCGCGAACAAGGCACATAGCGAGCGGTTCTTTCG
GTTTCACCGCGTTCTGCCAAAGATACATGGATACCTGAAACAGGTTCGAC
AGGCAGTAGAAAGGCATGGGCAGCAGTGGGTGGCGTAG

Coding sequence (CDS) from alignment at tig00000088_pilon:421748..423235+

>Ggra7769.t1 ID=Ggra7769.t1|Name=Ggra7769.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1488bp|location=Sequence derived from alignment at tig00000088_pilon:421748..423235+ (Gracilaria gracilis GNS1m male)
ATGGCCAACCGGCCCACGTATTTGCCGCCACTTTCACCGTCGGCCAGATC
TCACCCGCACCATCACACCGACGTCCCCACACTACAGAGCTACCCAGTCA
AGCTCTCCGCCGACGTGGTCAATGCTCTGCTCAACGGAGAGGGGGCCTGC
ATCGAGTTCACTCACGATGAGCAGGGCAAGATTTATATCCCCAACCGTGA
GGATATTACCTTCACCACACGCGCCATCACAGCCGACAACGCCGACACCT
CGCGCGCAGCCCTCTATTCACGGAGAGCCAACAACTTGCGACTGGTTGGA
CCCATCAATCATGAGATGGAAATCGACCGCTTCCCCAACCAGCGCTCGAT
TGCTCCGAAGAAGCGCCCCGTCTCCTCGCGCAACCCCACAAAGCGCGAGG
TGAAGACGTCGGACGGCTCGGAGCACGCATCGGCCCCCAAGCCGCGTGCG
CGAAAAGCTACCGAGAAGCGTCCGCGAGCGCCTCCGCGTCAACCGGCTGC
GAACGCCACCAACGCCAACAACACGCCCGCCTTCCGGATACCGCGTAGCG
TTCCCGCTCCGCTGGCGCCGTCGTTGCGATCTGCGCCTGCGTCGCCCACG
GAGAATGGTCGCCATTCTGCGCCGAAACGCTCTGCCCCCGCCGCTCGCAA
TTCGATGGGGTCGCTTGGTGTGCGACGCATCTCACCGCCTTCGAGCACGC
AATTGCCGAAGCCGGTGTCACGACAGACGCCCACGAAAGCACGTCAGTCA
CCGCACTCGAGTTCGAGAGGGCCTTCGCCCAATGTGCACTCTCCGAGCAG
CCCGCGTGTGAGCAGCCGCGCCAAGTTGGACGATCCGGAAGACGTCCGTC
GTCATTTGGTGCACTCGTTGGCGCTGGGCGATATGACGATGAAGGCTATA
CGCTGTCGTCATGAGGCGCGCAACATGGACATGGCAAGCCCCGTGCTGGA
TGGTGCGCTCGGCGAAGTGGCGGAGAAGACCGGTAGCACATACCGGTTGA
AGAAGCGGTCGTGGCGGGAAGTCTACGATGACTATACCGACTACAACGGC
ACGGAAAAGAGAATGATGACGCAAAATCGCTTCAAAGTCGGTGGCGTCGA
CGGCAAGCTGGGCATGGAGGTCATGAATGATGACCTGTTGAACAATGACG
TGAGTGATTTTGTGAAGCTGATAGACAGGTCTGCAGCCGAGTCAAAGGAT
GTGGAGGACGACGACAAGCTGCGCGAGAACTACGTTAAAGGGTACAAGCT
TTACTGCGAGCTGGTGGATAGACTCGCCGTTGTCGCGACCAAGTTCCGAC
GGCTGCAAGACAAGTGGGTAACAAGCGGTGAAACCGGGAAACCGCACGTG
AGTTTGTTGATTCAATCCGCGAACAAGGCACATAGCGAGCGGTTCTTTCG
GTTTCACCGCGTTCTGCCAAAGATACATGGATACCTGAAACAGGTTCGAC
AGGCAGTAGAAAGGCATGGGCAGCAGTGGGTGGCGTAG