Ggra7721.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra7721.t1
Unique NameGgra7721.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length218
Homology
BLAST of Ggra7721.t1 vs. uniprot
Match: A0A2V3IX19 (SRP_SPB domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX19_9FLOR)

HSP 1 Score: 253 bits (647), Expect = 4.470e-83
Identity = 122/180 (67.78%), Postives = 151/180 (83.89%), Query Frame = 0
Query:   38 VKSAYDEARGATEEKKAQKVFELQLSYLRSKDMITPQVFHSLLQDMKAAAGLSGLREHLPWVQNNPALGEFKEQEKIISAMTPTEKKDAFSIKISDKKRLARETDAAMESVEALVTQITQMRRIQKWLWKREKDNSPLPANAAELERMIAVTGGVKRGKEYNQWPNPGVPVKQRKRRGLW 217
            +KSAY EA+ + EEK+++K+F++Q+ YLR K+M+TP VF S LQ MK AAGLSG++EHLPWVQNNPALGEFK+QE II+AMTP+EKKDAFSI ISDKKR+ R  DA ME+VEALVTQITQMRRIQKW+WKREK+  P+P +A ELERMI  +GGVK  +E++++PNPGVP K R RR  W
Sbjct:    1 MKSAYGEAQTSAEEKRSKKMFQIQMGYLRGKEMMTPNVFLSALQKMKQAAGLSGVKEHLPWVQNNPALGEFKQQESIIAAMTPSEKKDAFSITISDKKRIMRAADAPMEAVEALVTQITQMRRIQKWMWKREKEGLPIPRSADELERMIVASGGVKGAREHHKYPNPGVPEKGRTRRWAW 180          
BLAST of Ggra7721.t1 vs. uniprot
Match: R7Q4P9 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4P9_CHOCR)

HSP 1 Score: 156 bits (395), Expect = 9.520e-42
Identity = 81/185 (43.78%), Postives = 118/185 (63.78%), Query Frame = 0
Query:   23 RAFRSTVINNGIVDNVKSAYDEARGATEEKKAQKVFELQLSYLRSKDMITPQVFHSLLQDMKAAAGLSGLREHLPWVQNNPALGEFKEQEKIISAMTPTEKKDAFSIKISDKKRLARETDAAMESVEALVTQITQMRRIQKWLWKREKDNSPLPANAAELERMIAVTG-GVKRGKEYNQWPNPGV 206
            R  RS+V + G++DN++SAYD+A   +E K+  KVFE Q+  L +   I    F  L+Q+MK A+GL G++EHLPWV+NNPA GEFK+QE+++ A TP E+ + F I IS  KR+AR+ +  +  VE LV Q+  M  IQKW+ KR+     LP ++ E++ M+   G G+ R     Q  NPG+
Sbjct:  279 RNIRSSVPSLGVMDNMRSAYDKALQGSESKRESKVFEAQMKLLTADKRIDANSFLDLVQEMKMASGLGGVKEHLPWVRNNPATGEFKKQEEMLRAFTPAERANVFGIGISGLKRVARQANTDLHQVEGLVGQVKSMISIQKWMKKRKDSGEKLPESSREMQDMLLRPGSGISRKAGKGQKLNPGI 463          
The following BLAST results are available for this feature:
BLAST of Ggra7721.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IX194.470e-8367.78SRP_SPB domain-containing protein n=1 Tax=Gracilar... [more]
R7Q4P99.520e-4243.78Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004125Signal recognition particle, SRP54 subunit, M-domainPFAMPF02978SRP_SPBcoord: 76..160
e-value: 2.3E-7
score: 31.3
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilyGENE3D1.10.260.30coord: 46..165
e-value: 3.2E-12
score: 48.7
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilySUPERFAMILY47446Signal peptide-binding domaincoord: 40..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..217

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:151304..151957 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7721.t1Ggra7721.t1Gracilaria gracilis GNS1m malemRNAtig00000088_pilon 151304..151957 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra7721.t1 ID=Ggra7721.t1|Name=Ggra7721.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=218bp
MATLRSATRTFRAAYAGLRLDQRAFRSTVINNGIVDNVKSAYDEARGATE
EKKAQKVFELQLSYLRSKDMITPQVFHSLLQDMKAAAGLSGLREHLPWVQ
NNPALGEFKEQEKIISAMTPTEKKDAFSIKISDKKRLARETDAAMESVEA
LVTQITQMRRIQKWLWKREKDNSPLPANAAELERMIAVTGGVKRGKEYNQ
WPNPGVPVKQRKRRGLW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004125Signal_recog_particle_SRP54_M
IPR036891Signal_recog_part_SRP54_M_sf