Ggra7721.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7721.t1
Unique NameGgra7721.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length218
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:151304..151957 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1348635.BBJY01000002_gene3614
Preferred nameffh
PFAMsSRP54,SRP54_N,SRP_SPB
Max annot lvl135623|Vibrionales
KEGG koko:K03106
KEGG TC3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
Evalue0.00085
EggNOG OGsCOG0541@1|root,COG0541@2|Bacteria,1MVIA@1224|Proteobacteria,1RMU9@1236|Gammaproteobacteria,1XTFD@135623|Vibrionales
EC3.6.5.4
DescriptionInvolved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko02044
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7721Ggra7721Gracilaria gracilis GNS1m malegenetig00000088_pilon 151304..151957 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7721.t1.stop1Ggra7721.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000088_pilon 151304..151306 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7721.t1.CDS1Ggra7721.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000088_pilon 151304..151957 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7721.t1.exon1Ggra7721.t1.exon1Gracilaria gracilis GNS1m maleexontig00000088_pilon 151304..151957 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7721.t1.start1Ggra7721.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000088_pilon 151955..151957 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7721.t1Ggra7721.t1Gracilaria gracilis GNS1m malepolypeptidetig00000088_pilon 151304..151957 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7721.t1 ID=Ggra7721.t1|Name=Ggra7721.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=218bp
MATLRSATRTFRAAYAGLRLDQRAFRSTVINNGIVDNVKSAYDEARGATE
EKKAQKVFELQLSYLRSKDMITPQVFHSLLQDMKAAAGLSGLREHLPWVQ
NNPALGEFKEQEKIISAMTPTEKKDAFSIKISDKKRLARETDAAMESVEA
LVTQITQMRRIQKWLWKREKDNSPLPANAAELERMIAVTGGVKRGKEYNQ
WPNPGVPVKQRKRRGLW*
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spliced messenger RNA

>Ggra7721.t1 ID=Ggra7721.t1|Name=Ggra7721.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=654bp|location=Sequence derived from alignment at tig00000088_pilon:151304..151957- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACGTTAAGATCAGCGACAAGAACTTTCCGAGCAGCATATGCAGG
TTTGCGCTTGGATCAACGTGCATTTCGCTCAACAGTCATTAACAATGGTA
TCGTAGACAACGTTAAATCTGCGTATGATGAGGCCAGAGGCGCCACTGAG
GAGAAGAAAGCGCAGAAGGTTTTCGAGTTACAACTTTCATACCTTCGTTC
AAAAGATATGATAACACCACAAGTATTTCATTCTCTATTGCAGGATATGA
AAGCTGCGGCTGGATTGTCAGGCCTAAGAGAGCATTTGCCATGGGTTCAA
AACAACCCTGCACTCGGTGAGTTTAAAGAGCAGGAGAAGATCATTTCGGC
AATGACTCCAACTGAAAAGAAGGATGCCTTCTCGATTAAGATCAGTGATA
AGAAACGTCTGGCAAGGGAGACCGATGCCGCTATGGAATCCGTGGAAGCA
CTGGTCACACAGATAACCCAGATGAGAAGAATTCAGAAGTGGCTTTGGAA
GAGGGAAAAGGATAATTCGCCGCTTCCAGCGAACGCTGCCGAACTAGAGC
GTATGATAGCTGTGACAGGTGGGGTTAAACGGGGAAAGGAATACAACCAA
TGGCCGAATCCAGGTGTGCCCGTGAAGCAACGAAAGCGGAGAGGGTTATG
GTGA
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protein sequence of Ggra7721.t1

>Ggra7721.t1 ID=Ggra7721.t1|Name=Ggra7721.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=218bp
MATLRSATRTFRAAYAGLRLDQRAFRSTVINNGIVDNVKSAYDEARGATE
EKKAQKVFELQLSYLRSKDMITPQVFHSLLQDMKAAAGLSGLREHLPWVQ
NNPALGEFKEQEKIISAMTPTEKKDAFSIKISDKKRLARETDAAMESVEA
LVTQITQMRRIQKWLWKREKDNSPLPANAAELERMIAVTGGVKRGKEYNQ
WPNPGVPVKQRKRRGLW*
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mRNA from alignment at tig00000088_pilon:151304..151957-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7721.t1 ID=Ggra7721.t1|Name=Ggra7721.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=654bp|location=Sequence derived from alignment at tig00000088_pilon:151304..151957- (Gracilaria gracilis GNS1m male)
ATGGCCACGTTAAGATCAGCGACAAGAACTTTCCGAGCAGCATATGCAGG
TTTGCGCTTGGATCAACGTGCATTTCGCTCAACAGTCATTAACAATGGTA
TCGTAGACAACGTTAAATCTGCGTATGATGAGGCCAGAGGCGCCACTGAG
GAGAAGAAAGCGCAGAAGGTTTTCGAGTTACAACTTTCATACCTTCGTTC
AAAAGATATGATAACACCACAAGTATTTCATTCTCTATTGCAGGATATGA
AAGCTGCGGCTGGATTGTCAGGCCTAAGAGAGCATTTGCCATGGGTTCAA
AACAACCCTGCACTCGGTGAGTTTAAAGAGCAGGAGAAGATCATTTCGGC
AATGACTCCAACTGAAAAGAAGGATGCCTTCTCGATTAAGATCAGTGATA
AGAAACGTCTGGCAAGGGAGACCGATGCCGCTATGGAATCCGTGGAAGCA
CTGGTCACACAGATAACCCAGATGAGAAGAATTCAGAAGTGGCTTTGGAA
GAGGGAAAAGGATAATTCGCCGCTTCCAGCGAACGCTGCCGAACTAGAGC
GTATGATAGCTGTGACAGGTGGGGTTAAACGGGGAAAGGAATACAACCAA
TGGCCGAATCCAGGTGTGCCCGTGAAGCAACGAAAGCGGAGAGGGTTATG
GTGA
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Coding sequence (CDS) from alignment at tig00000088_pilon:151304..151957-

>Ggra7721.t1 ID=Ggra7721.t1|Name=Ggra7721.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=654bp|location=Sequence derived from alignment at tig00000088_pilon:151304..151957- (Gracilaria gracilis GNS1m male)
ATGGCCACGTTAAGATCAGCGACAAGAACTTTCCGAGCAGCATATGCAGG
TTTGCGCTTGGATCAACGTGCATTTCGCTCAACAGTCATTAACAATGGTA
TCGTAGACAACGTTAAATCTGCGTATGATGAGGCCAGAGGCGCCACTGAG
GAGAAGAAAGCGCAGAAGGTTTTCGAGTTACAACTTTCATACCTTCGTTC
AAAAGATATGATAACACCACAAGTATTTCATTCTCTATTGCAGGATATGA
AAGCTGCGGCTGGATTGTCAGGCCTAAGAGAGCATTTGCCATGGGTTCAA
AACAACCCTGCACTCGGTGAGTTTAAAGAGCAGGAGAAGATCATTTCGGC
AATGACTCCAACTGAAAAGAAGGATGCCTTCTCGATTAAGATCAGTGATA
AGAAACGTCTGGCAAGGGAGACCGATGCCGCTATGGAATCCGTGGAAGCA
CTGGTCACACAGATAACCCAGATGAGAAGAATTCAGAAGTGGCTTTGGAA
GAGGGAAAAGGATAATTCGCCGCTTCCAGCGAACGCTGCCGAACTAGAGC
GTATGATAGCTGTGACAGGTGGGGTTAAACGGGGAAAGGAATACAACCAA
TGGCCGAATCCAGGTGTGCCCGTGAAGCAACGAAAGCGGAGAGGGTTATG
GTGA
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