Ggra6571.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6571.t1
Unique NameGgra6571.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length159
Homology
BLAST of Ggra6571.t1 vs. uniprot
Match: A0A2V3IVC7 (Mediator of RNA polymerase II transcription subunit 10 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVC7_9FLOR)

HSP 1 Score: 183 bits (464), Expect = 1.540e-56
Identity = 100/162 (61.73%), Postives = 122/162 (75.31%), Query Frame = 0
Query:    1 MDDDSDVILVETRTAQPSAQPASSAATPLDALEVELQSTCAVLTSFAQDVIQFTYDSQNGLFDRVNEFVNCLKRVDEKGKAVDAVIPFDVLEAIDKGRNPEYVTLSLLESCQESNSVSHGKVSVMRQFKQHLENAMRDMPEQTP----QPNGNDAQPSTNPG 158
            M++DS V+LV+   A  + +PA S   PL++LE ELQSTCA LT+FAQDVI F+YDSQN LFDRVN+FV CL  VDEK + VDA+IP+DVLEAIDKGRNP +VT SLLESC E+N++S GKV VMRQF++ L NA   +P  T     +PNGND QP T PG
Sbjct:    1 MENDSHVVLVQPAAAD-TPRPAPS---PLESLENELQSTCASLTAFAQDVINFSYDSQNSLFDRVNDFVKCLHAVDEKCQHVDAMIPYDVLEAIDKGRNPGHVTFSLLESCAEANNISRGKVDVMRQFREQLRNAATQLPADTDHQLTEPNGNDTQPHTAPG 158          
BLAST of Ggra6571.t1 vs. uniprot
Match: A0A7S0RTU2 (Mediator of RNA polymerase II transcription subunit 10 n=2 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RTU2_9CHLO)

HSP 1 Score: 68.6 bits (166), Expect = 1.120e-11
Identity = 31/91 (34.07%), Postives = 54/91 (59.34%), Query Frame = 0
Query:   48 QDVIQFTYDSQNGLFDRVNEFVNCLKRVDEKGKAVDAVIPFDVLEAIDKGRNPEYVTLSLLESCQESNSVSHGKVSVMRQFKQHLENAMRD 138
            Q V  F+ DSQ  LF+R+N FV+ L  + E   +    +P ++L  +D+G NP+  ++S  E C E N  + G+V+V+++F   L +A ++
Sbjct:   34 QQVQDFSEDSQQLLFERMNNFVDSLTHLRESASSTTIEVPVELLAVVDRGENPDLFSVSRFEQCIERNQATKGRVTVLKEFSDSLLDAAKE 124          
BLAST of Ggra6571.t1 vs. uniprot
Match: A0A8I6REF9 (Uncharacterized protein n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6REF9_CIMLE)

HSP 1 Score: 57.8 bits (138), Expect = 9.850e-8
Identity = 33/105 (31.43%), Postives = 50/105 (47.62%), Query Frame = 0
Query:   29 LDALEVELQSTCAVLTSFAQDVIQFTYDSQNGLFDRVNEFVNCLKRVDE-KGKAVDAVIPFDVLEAIDKGRNPEYVTLSLLESCQESNSVSHGKVSVMRQFKQHL 132
            L+ LE +L+     +      V  F    QN L  ++   VN L+ VD  K +  D ++P +V + ID GRNP+  T   +E     N    GK+   R+FK +L
Sbjct:    5 LENLETQLEMFIENVRQIKIIVSDFQPQGQNVLNQKIQSMVNGLQEVDRLKSQVQDVLVPLEVFDYIDNGRNPQIYTKDCIEKALTKNEQVKGKIDAYRRFKSYL 109          
BLAST of Ggra6571.t1 vs. uniprot
Match: A0A8J6L5F1 (Mediator of RNA polymerase II transcription subunit 10 n=3 Tax=Muroidea TaxID=337687 RepID=A0A8J6L5F1_MICOH)

HSP 1 Score: 57.0 bits (136), Expect = 5.350e-7
Identity = 39/119 (32.77%), Postives = 58/119 (48.74%), Query Frame = 0
Query:   15 AQPSAQPASSAATPLDALEVELQSTCAVLTSFAQDVIQFTYDSQNGLFDRVNEFVNCLKRVDE-KGKAVDAVIPFDVLEAIDKGRNPEYVTLSLLESCQESNSVSHGKVSVMRQFKQHL 132
            A+  A+PA   A   D LE  L+     +      V  F   SQ GL  ++N  V  L+ +D+ + +  D ++P +V E ID+GRNP+  T   LE     N    GK+  M++FK  L
Sbjct:   56 AEGRAEPAM--AEKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLSQKLNFIVTGLQDIDKCRQQLHDIMVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLL 172          
BLAST of Ggra6571.t1 vs. uniprot
Match: A0A0J9XGR2 (Mediator of RNA polymerase II transcription subunit 10 n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9XGR2_GEOCN)

HSP 1 Score: 55.8 bits (133), Expect = 1.120e-6
Identity = 34/129 (26.36%), Postives = 61/129 (47.29%), Query Frame = 0
Query:   12 TRTAQPSAQPASSAATPLDALEVELQSTCAVLTSFAQDVIQF--TYDSQNGLFDRVNEFVNCLKRVDEKGKAVDAVIPFDVLEAIDKGRNPEYVTLSLLESCQESNSVSHGKVSVMRQFKQHLENAMRD 138
            T TA  +    +  A  L   E +L+            V  F  T +++ GL +RVN  +  +  ++  G  +D  +P DV+  ++KGRNP+  T   +E   + N   +GK+  M+ F+  L N +++
Sbjct:    5 TSTAAATVSDFNQEAASLQETEAQLRQVIETFIELGIIVHDFQGTVEAKEGLVERVNVLMKQMDDLNFMGYKLDHRLPVDVVNYVEKGRNPDVYTREFVELLAKQNQYINGKMRAMKDFQDILGNTVKE 133          
BLAST of Ggra6571.t1 vs. uniprot
Match: R4FLE9 (Mediator of RNA polymerase II transcription subunit 10 n=3 Tax=Triatominae TaxID=70999 RepID=R4FLE9_RHOPR)

HSP 1 Score: 53.5 bits (127), Expect = 3.990e-6
Identity = 31/105 (29.52%), Postives = 49/105 (46.67%), Query Frame = 0
Query:   29 LDALEVELQSTCAVLTSFAQDVIQFTYDSQNGLFDRVNEFVNCLKRVDE-KGKAVDAVIPFDVLEAIDKGRNPEYVTLSLLESCQESNSVSHGKVSVMRQFKQHL 132
            L+ LE +L+     +      V  F    QN L  ++   V  L+ VD+ K +  + ++P +V + ID GRNP+  T   +E     N    GK+    +FK HL
Sbjct:    6 LENLETQLEMFIENVRQIKIIVSDFQPQGQNVLNQKIQALVTGLQEVDKLKSQVQEVMVPLEVFDYIDNGRNPQLYTKDCIEKALTKNEQVKGKIDAYSRFKAHL 110          
The following BLAST results are available for this feature:
BLAST of Ggra6571.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IVC71.540e-5661.73Mediator of RNA polymerase II transcription subuni... [more]
A0A7S0RTU21.120e-1134.07Mediator of RNA polymerase II transcription subuni... [more]
A0A8I6REF99.850e-831.43Uncharacterized protein n=1 Tax=Cimex lectularius ... [more]
A0A8J6L5F15.350e-732.77Mediator of RNA polymerase II transcription subuni... [more]
A0A0J9XGR21.120e-626.36Mediator of RNA polymerase II transcription subuni... [more]
R4FLE93.990e-629.52Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019145Mediator complex, subunit Med10PFAMPF09748Med10coord: 36..141
e-value: 1.3E-16
score: 60.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..158
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..158
NoneNo IPR availablePANTHERPTHR13345:SF9MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10A-RELATEDcoord: 13..135
NoneNo IPR availablePANTHERPTHR13345MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10coord: 13..135

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:305401..306131 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6571.t1Ggra6571.t1Gracilaria gracilis GNS1m malemRNAtig00000081_pilon 305401..306131 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6571.t1 ID=Ggra6571.t1|Name=Ggra6571.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=159bp
MDDDSDVILVETRTAQPSAQPASSAATPLDALEVELQSTCAVLTSFAQDV
IQFTYDSQNGLFDRVNEFVNCLKRVDEKGKAVDAVIPFDVLEAIDKGRNP
EYVTLSLLESCQESNSVSHGKVSVMRQFKQHLENAMRDMPEQTPQPNGND
AQPSTNPG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019145Mediator_Med10