Ggra6571.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6571.t1
Unique NameGgra6571.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length159
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:305401..306131 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42099.EPrPV00000022826
PFAMsMed10
Max annot lvl121069|Pythiales
Evalue2.16e-10
EggNOG OGs2CB04@1|root,2S39K@2759|Eukaryota,1MDHG@121069|Pythiales
DescriptionMediator complex subunit 10. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6571Ggra6571Gracilaria gracilis GNS1m malegenetig00000081_pilon 305401..306131 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6571.t1Ggra6571.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 305401..306131 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6571.t1.stop1Ggra6571.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 305401..305403 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6571.t1.CDS1Ggra6571.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 305401..305491 -
Ggra6571.t1.CDS2Ggra6571.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000081_pilon 305579..305641 -
Ggra6571.t1.CDS3Ggra6571.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000081_pilon 305724..305852 -
Ggra6571.t1.CDS4Ggra6571.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000081_pilon 305938..306131 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6571.t1.exon1Ggra6571.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 305401..305491 -
Ggra6571.t1.exon2Ggra6571.t1.exon2Gracilaria gracilis GNS1m maleexontig00000081_pilon 305579..305641 -
Ggra6571.t1.exon3Ggra6571.t1.exon3Gracilaria gracilis GNS1m maleexontig00000081_pilon 305724..305852 -
Ggra6571.t1.exon4Ggra6571.t1.exon4Gracilaria gracilis GNS1m maleexontig00000081_pilon 305938..306131 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6571.t1.intron1Ggra6571.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000081_pilon 305492..305578 -
Ggra6571.t1.intron2Ggra6571.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000081_pilon 305642..305723 -
Ggra6571.t1.intron3Ggra6571.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000081_pilon 305853..305937 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6571.t1.start1Ggra6571.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 306129..306131 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6571.t1 ID=Ggra6571.t1|Name=Ggra6571.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=159bp
MDDDSDVILVETRTAQPSAQPASSAATPLDALEVELQSTCAVLTSFAQDV
IQFTYDSQNGLFDRVNEFVNCLKRVDEKGKAVDAVIPFDVLEAIDKGRNP
EYVTLSLLESCQESNSVSHGKVSVMRQFKQHLENAMRDMPEQTPQPNGND
AQPSTNPG*
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spliced messenger RNA

>Ggra6571.t1 ID=Ggra6571.t1|Name=Ggra6571.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=477bp|location=Sequence derived from alignment at tig00000081_pilon:305401..306131- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGACGATTCGGACGTTATTCTGGTGGAGACTAGAACTGCGCAGCC
TAGTGCTCAGCCGGCTTCTTCTGCTGCCACTCCGTTGGATGCACTTGAGG
TAGAACTACAGTCAACATGCGCTGTGCTTACGTCCTTTGCGCAGGATGTC
ATTCAGTTTACATATGACTCCCAGAACGGATTGTTTGATCGTGTAAATGA
GTTTGTGAATTGCCTGAAAAGAGTCGATGAGAAAGGTAAAGCTGTTGATG
CTGTTATTCCTTTTGATGTCCTTGAAGCCATTGATAAGGGACGCAACCCA
GAATACGTCACTCTCTCTTTGTTAGAATCATGCCAAGAGTCGAACAGTGT
TTCACACGGAAAGGTTTCGGTTATGCGACAGTTCAAACAACATCTTGAGA
ATGCGATGCGAGATATGCCAGAACAAACACCTCAACCAAATGGAAATGAT
GCTCAACCTTCGACAAATCCCGGATAG
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protein sequence of Ggra6571.t1

>Ggra6571.t1 ID=Ggra6571.t1|Name=Ggra6571.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=159bp
MDDDSDVILVETRTAQPSAQPASSAATPLDALEVELQSTCAVLTSFAQDV
IQFTYDSQNGLFDRVNEFVNCLKRVDEKGKAVDAVIPFDVLEAIDKGRNP
EYVTLSLLESCQESNSVSHGKVSVMRQFKQHLENAMRDMPEQTPQPNGND
AQPSTNPG*
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mRNA from alignment at tig00000081_pilon:305401..306131-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6571.t1 ID=Ggra6571.t1|Name=Ggra6571.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=731bp|location=Sequence derived from alignment at tig00000081_pilon:305401..306131- (Gracilaria gracilis GNS1m male)
ATGGATGACGATTCGGACGTTATTCTGGTGGAGACTAGAACTGCGCAGCC
TAGTGCTCAGCCGGCTTCTTCTGCTGCCACTCCGTTGGATGCACTTGAGG
TAGAACTACAGTCAACATGCGCTGTGCTTACGTCCTTTGCGCAGGATGTC
ATTCAGTTTACATATGACTCCCAGAACGGATTGTTTGATCGTGTGTAAGT
TATCTATGACCGGTAGATCTTCGTCGCTGCTTACCGTGTTCTGTCCAGGG
CTTTGTTCTCACTTCTTCCTTGTTCATAGAAATGAGTTTGTGAATTGCCT
GAAAAGAGTCGATGAGAAAGGTAAAGCTGTTGATGCTGTTATTCCTTTTG
ATGTCCTTGAAGCCATTGATAAGGGACGCAACCCAGAATACGTCACTCTC
TCTTTGTTGTATGTTATTTCACTCTGCTTCTCTTGTATGCCTTCTTTCTT
GTTTGGTCATTCTAACTCACATGTCGTCCAATCTCTACAGAGAATCATGC
CAAGAGTCGAACAGTGTTTCACACGGAAAGGTTTCGGTTATGCGACAGTT
CAAGTACGTCTTGCAGAATGTATCTCGCCAATTTCAGCGCGTTCGTTTCA
TTCGCTCTTTCCTCTAACACAGTTCCTTTGCTCTATGAAGACAACATCTT
GAGAATGCGATGCGAGATATGCCAGAACAAACACCTCAACCAAATGGAAA
TGATGCTCAACCTTCGACAAATCCCGGATAG
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Coding sequence (CDS) from alignment at tig00000081_pilon:305401..306131-

>Ggra6571.t1 ID=Ggra6571.t1|Name=Ggra6571.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=477bp|location=Sequence derived from alignment at tig00000081_pilon:305401..306131- (Gracilaria gracilis GNS1m male)
ATGGATGACGATTCGGACGTTATTCTGGTGGAGACTAGAACTGCGCAGCC
TAGTGCTCAGCCGGCTTCTTCTGCTGCCACTCCGTTGGATGCACTTGAGG
TAGAACTACAGTCAACATGCGCTGTGCTTACGTCCTTTGCGCAGGATGTC
ATTCAGTTTACATATGACTCCCAGAACGGATTGTTTGATCGTGTAAATGA
GTTTGTGAATTGCCTGAAAAGAGTCGATGAGAAAGGTAAAGCTGTTGATG
CTGTTATTCCTTTTGATGTCCTTGAAGCCATTGATAAGGGACGCAACCCA
GAATACGTCACTCTCTCTTTGTTAGAATCATGCCAAGAGTCGAACAGTGT
TTCACACGGAAAGGTTTCGGTTATGCGACAGTTCAAACAACATCTTGAGA
ATGCGATGCGAGATATGCCAGAACAAACACCTCAACCAAATGGAAATGAT
GCTCAACCTTCGACAAATCCCGGATAG
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