Ggra6539.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6539.t1
Unique NameGgra6539.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length481
Homology
BLAST of Ggra6539.t1 vs. uniprot
Match: A0A2V3IEU7 (5'-AMP-activated protein kinase subunit gamma-2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEU7_9FLOR)

HSP 1 Score: 345 bits (884), Expect = 3.670e-113
Identity = 195/311 (62.70%), Postives = 232/311 (74.60%), Query Frame = 0
Query:  175 MAAAARDDVMDVEA-------VARDADALLLDARAELHSHLRAHAVHRLVPPQSRVLIVDAAVPALCAFRALRDNDVRAAAVLHDGALCAMLTLATALHAACEPLLLARPLAAFVSRSAVLPLVSVSADAPQLHAARLLSQTASPPLAVMHGSEPLHWLFAERLLALLEPRFRDAPFLQCTIRTLRIGRYSDITTADVSMRVHDAARIMVARGLDSLPVTANGVVCGVLDGELVGAAXXXXXXXXXXADVPSVAAAQIAAFMRPAAVCSRDDTLHAVLSKLGHGCRRVFVADQQRVV-GVIGLRHLLRFFL 477
            MA    +D M+VEA        A   DALL+ AR++LH +L +HAVH LVP  SRVLIVDA +    AFRAL +NDVRAAAVLH+G+LC MLTL +ALH AC+  LL+RPL  FV +SAV P +SVSADA QLHAARLLSQT SPPLAVMHGSE LHWLFAERLLALLEPRFRDAPFL+ +I +L++GRY+D+ TAD+ MRV DAAR+M++RGLDSLPVTA G V GVLDGE+VGAA                   ++ AFM+  AVC+R++ L +V+ KL  G RRVFVAD+QRVV GVIGL HLLRFFL
Sbjct:    1 MATETSEDAMEVEAHYSVPTSPAPHIDALLVTARSQLHQYLSSHAVHELVPAHSRVLIVDANICTQHAFRALGENDVRAAAVLHNGSLCGMLTLTSALHVACDSQLLSRPLYTFVQQSAVQPFISVSADAAQLHAARLLSQTGSPPLAVMHGSEALHWLFAERLLALLEPRFRDAPFLRYSIGSLQLGRYTDLVTADMRMRVEDAARVMISRGLDSLPVTAGGRVVGVLDGEVVGAAAAAGGIGG-----------EVCAFMQQGAVCAREEALGSVIGKLRDGWRRVFVADEQRVVIGVIGLGHLLRFFL 300          
BLAST of Ggra6539.t1 vs. uniprot
Match: A0A2V3IEU2 (Protein LSM14-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IEU2_9FLOR)

HSP 1 Score: 134 bits (338), Expect = 3.860e-31
Identity = 75/108 (69.44%), Postives = 76/108 (70.37%), Query Frame = 0
Query:    1 MATQQPQXXXXXXHAAPSXXPSXXXXXXXXXXXXSVPYVGSRISLISKSAIRYVGTLYTIDTGASTVALKDVRSFGTEGRSRAGGPVQPSDRVFSYIVFHGADIRDLH 108
            MATQQP        AA S   S              PYVGSRISLISKSAIRYVGTLYTIDT ASTVALKDVRS+GTEGR R GGPVQPS  VFSYIVFHG DIRDLH
Sbjct:    1 MATQQPPRPPAAAPAARSSPASQP------------PYVGSRISLISKSAIRYVGTLYTIDTNASTVALKDVRSYGTEGRPREGGPVQPSTHVFSYIVFHGPDIRDLH 96          
BLAST of Ggra6539.t1 vs. uniprot
Match: protein LSM14 homolog A-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F07F70 (protein LSM14 homolog A-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F07F70)

HSP 1 Score: 101 bits (251), Expect = 7.250e-21
Identity = 57/101 (56.44%), Postives = 67/101 (66.34%), Query Frame = 0
Query:   36 VPYVGSRISLISKSAIRYVGTLYTIDTGASTVALKDVRSFGTEGRSRAGGPVQPSDRVFSYIVFHGADIRDLHNERMERPEQAPVAPLYDRNKSFFDELVP 136
            VPY+GS+ISLISK+ IRY G LYTIDT  STVAL  VRSFGTE R     PV P D VF YI+F GADI+DLH    E P+  P APL  ++ +   +  P
Sbjct:    5 VPYIGSKISLISKAEIRYEGILYTIDTKESTVALAKVRSFGTEDRP-TDRPVAPRDEVFEYIIFRGADIKDLHV--CEPPK--PSAPLPPQDPAIVQQSAP 100          
BLAST of Ggra6539.t1 vs. uniprot
Match: A0A2N1MR72 (LSM14 domain-containing protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N1MR72_9GLOM)

HSP 1 Score: 96.3 bits (238), Expect = 2.130e-20
Identity = 48/92 (52.17%), Postives = 63/92 (68.48%), Query Frame = 0
Query:   36 VPYVGSRISLISKSAIRYVGTLYTIDTGASTVALKDVRSFGTEGRSRAGGPVQPSDRVFSYIVFHGADIRDLH-----NERMERPEQAPVAP 122
            V Y+GS+ISLISKS IRYVG L++I++  STVAL+ VRS+GTEGR      + PSD +F YIVF G+D++DLH      ++   P Q P  P
Sbjct:    4 VGYIGSKISLISKSDIRYVGILHSINSADSTVALEQVRSYGTEGRRGPAEEIPPSDNIFEYIVFRGSDVKDLHVCEAPAQQQSLPPQVPNDP 95          
BLAST of Ggra6539.t1 vs. uniprot
Match: A0A3M7Q2B1 (LSM14-like protein (Fragment) n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7Q2B1_BRAPC)

HSP 1 Score: 96.3 bits (238), Expect = 5.190e-20
Identity = 51/95 (53.68%), Postives = 61/95 (64.21%), Query Frame = 0
Query:   35 SVPYVGSRISLISKSAIRYVGTLYTIDTGASTVALKDVRSFGTEGRSRAGGPVQPSDRVFSYIVFHGADIRDLH----NERMERPEQAPVAPLYD 125
            + PY+GS+ISL+SK+ IRY G LYTIDT  STVAL  VRSFGTE R     PV P D VF YI+F G+DI DLH        ++P Q P   + D
Sbjct:    3 TTPYLGSKISLVSKAKIRYEGILYTIDTNESTVALAKVRSFGTEDRP-TDRPVPPRDEVFEYIIFRGSDIEDLHVCEPYPAAKQPNQLPSGLMQD 96          
BLAST of Ggra6539.t1 vs. uniprot
Match: A0A8C9VTY7 (LSM14 domain-containing protein n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9VTY7_SCLFO)

HSP 1 Score: 94.7 bits (234), Expect = 5.270e-20
Identity = 50/87 (57.47%), Postives = 61/87 (70.11%), Query Frame = 0
Query:   37 PYVGSRISLISKSAIRYVGTLYTIDTGASTVALKDVRSFGTEGRSRAGGPVQPSDRVFSYIVFHGADIRDLHNERMERPEQAPVAPL 123
            PY+GSRISLISK+ IRY G LYTIDT  +TVAL  VRSFGTEGR  A  PV P D ++ YI+F G+DI+D+     E P+   + PL
Sbjct:    6 PYIGSRISLISKAQIRYEGILYTIDTDNATVALAKVRSFGTEGR-HAERPVPPRDEIYEYIIFRGSDIKDI--TVCEPPKGMDLNPL 89          
BLAST of Ggra6539.t1 vs. uniprot
Match: A0A8C9WED9 (LSM14 domain-containing protein n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9WED9_SCLFO)

HSP 1 Score: 94.4 bits (233), Expect = 6.460e-20
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = 0
Query:   37 PYVGSRISLISKSAIRYVGTLYTIDTGASTVALKDVRSFGTEGRSRAGGPVQPSDRVFSYIVFHGADIRDL 107
            PY+GSRISLISK+ IRY G LYTIDT  +TVAL  VRSFGTEGR  A  PV P D ++ YI+F G+DI+D+
Sbjct:    6 PYIGSRISLISKAQIRYEGILYTIDTDNATVALAKVRSFGTEGR-HAERPVPPRDEIYEYIIFRGSDIKDI 75          
BLAST of Ggra6539.t1 vs. uniprot
Match: A0A671QHP5 (LSM family member 14B n=1 Tax=Sinocyclocheilus anshuiensis TaxID=1608454 RepID=A0A671QHP5_9TELE)

HSP 1 Score: 94.0 bits (232), Expect = 7.500e-20
Identity = 47/71 (66.20%), Postives = 54/71 (76.06%), Query Frame = 0
Query:   37 PYVGSRISLISKSAIRYVGTLYTIDTGASTVALKDVRSFGTEGRSRAGGPVQPSDRVFSYIVFHGADIRDL 107
            PY+GS+ISLISK+ IRY G LYTIDT  STVAL  VRSFGTEGR     PV P D VF YI+F G+DI+D+
Sbjct:    6 PYIGSKISLISKAQIRYEGILYTIDTENSTVALAKVRSFGTEGRP-TDRPVPPRDEVFEYIIFRGSDIKDI 75          
BLAST of Ggra6539.t1 vs. uniprot
Match: A0A4W4DS42 (LSM14 domain-containing protein n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4DS42_ELEEL)

HSP 1 Score: 94.4 bits (233), Expect = 7.880e-20
Identity = 47/71 (66.20%), Postives = 54/71 (76.06%), Query Frame = 0
Query:   37 PYVGSRISLISKSAIRYVGTLYTIDTGASTVALKDVRSFGTEGRSRAGGPVQPSDRVFSYIVFHGADIRDL 107
            PY+GS+ISLISK+ IRY G LYTIDT  STVAL  VRSFGTEGR     PV P D VF YI+F G+DI+D+
Sbjct:    6 PYIGSKISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEGRP-TDRPVPPRDEVFDYIIFRGSDIKDI 75          
BLAST of Ggra6539.t1 vs. uniprot
Match: A0A4W4DS09 (LSM14 domain-containing protein n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4DS09_ELEEL)

HSP 1 Score: 94.4 bits (233), Expect = 9.610e-20
Identity = 47/71 (66.20%), Postives = 54/71 (76.06%), Query Frame = 0
Query:   37 PYVGSRISLISKSAIRYVGTLYTIDTGASTVALKDVRSFGTEGRSRAGGPVQPSDRVFSYIVFHGADIRDL 107
            PY+GS+ISLISK+ IRY G LYTIDT  STVAL  VRSFGTEGR     PV P D VF YI+F G+DI+D+
Sbjct:    6 PYIGSKISLISKAQIRYEGILYTIDTDNSTVALAKVRSFGTEGRP-TDRPVPPRDEVFDYIIFRGSDIKDI 75          
The following BLAST results are available for this feature:
BLAST of Ggra6539.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IEU73.670e-11362.705'-AMP-activated protein kinase subunit gamma-2 n=... [more]
A0A2V3IEU23.860e-3169.44Protein LSM14-like n=1 Tax=Gracilariopsis chorda T... [more]
protein LSM14 homolog A-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F07F707.250e-2156.44protein LSM14 homolog A-like n=1 Tax=Saccoglossus ... [more]
A0A2N1MR722.130e-2052.17LSM14 domain-containing protein n=1 Tax=Rhizophagu... [more]
A0A3M7Q2B15.190e-2053.68LSM14-like protein (Fragment) n=1 Tax=Brachionus p... [more]
A0A8C9VTY75.270e-2057.47LSM14 domain-containing protein n=1 Tax=Scleropage... [more]
A0A8C9WED96.460e-2064.79LSM14 domain-containing protein n=1 Tax=Scleropage... [more]
A0A671QHP57.500e-2066.20LSM family member 14B n=1 Tax=Sinocyclocheilus ans... [more]
A0A4W4DS427.880e-2066.20LSM14 domain-containing protein n=1 Tax=Electropho... [more]
A0A4W4DS099.610e-2066.20LSM14 domain-containing protein n=1 Tax=Electropho... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025609Lsm14-like, N-terminalSMARTSM01271LSM14_2coord: 32..128
e-value: 1.9E-31
score: 120.4
IPR025609Lsm14-like, N-terminalPFAMPF12701LSM14coord: 37..108
e-value: 2.2E-25
score: 88.5
IPR025609Lsm14-like, N-terminalCDDcd01736LSm14_Ncoord: 37..107
e-value: 2.31607E-32
score: 116.148
IPR000644CBS domainSMARTSM00116cbs_1coord: 289..336
e-value: 92.0
score: 1.1
coord: 222..269
e-value: 76.0
score: 1.8
coord: 431..477
e-value: 0.062
score: 22.4
coord: 359..406
e-value: 0.73
score: 18.9
IPR000644CBS domainPFAMPF00571CBScoord: 428..476
e-value: 7.9E-7
score: 29.4
NoneNo IPR availableGENE3D3.10.580.10coord: 188..335
e-value: 6.5E-6
score: 27.9
NoneNo IPR availableGENE3D3.10.580.10coord: 340..478
e-value: 2.5E-15
score: 58.6
NoneNo IPR availableGENE3D2.30.30.100coord: 29..113
e-value: 1.8E-28
score: 100.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availablePANTHERPTHR13586:SF0TRAILER HITCH, ISOFORM Hcoord: 37..117
NoneNo IPR availablePANTHERPTHR13586SCD6 PROTEIN-RELATEDcoord: 37..117
NoneNo IPR availableCDDcd02205CBS_pair_SFcoord: 358..474
e-value: 3.25023E-6
score: 44.1576
NoneNo IPR availableSUPERFAMILY54631CBS-domain paircoord: 207..335
NoneNo IPR availableSUPERFAMILY54631CBS-domain paircoord: 352..477
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 37..108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:212200..214637 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6539.t1Ggra6539.t1Gracilaria gracilis GNS1m malemRNAtig00000081_pilon 212200..214637 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6539.t1 ID=Ggra6539.t1|Name=Ggra6539.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=481bp
MATQQPQQPQQPSHAAPSAPPSSAPPSSSSSSSSSVPYVGSRISLISKSA
IRYVGTLYTIDTGASTVALKDVRSFGTEGRSRAGGPVQPSDRVFSYIVFH
GADIRDLHNERMERPEQAPVAPLYDRNKSFFDELVPEKEMRGERNAAQRR
QTDVETAPPTKHVFPLRPSAAAATMAAAARDDVMDVEAVARDADALLLDA
RAELHSHLRAHAVHRLVPPQSRVLIVDAAVPALCAFRALRDNDVRAAAVL
HDGALCAMLTLATALHAACEPLLLARPLAAFVSRSAVLPLVSVSADAPQL
HAARLLSQTASPPLAVMHGSEPLHWLFAERLLALLEPRFRDAPFLQCTIR
TLRIGRYSDITTADVSMRVHDAARIMVARGLDSLPVTANGVVCGVLDGEL
VGAAVVAAAAAAGAADVPSVAAAQIAAFMRPAAVCSRDDTLHAVLSKLGH
GCRRVFVADQQRVVGVIGLRHLLRFFLPHF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025609Lsm14-like_N
IPR000644CBS_dom
IPR010920LSM_dom_sf