Ggra6539.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6539.t1
Unique NameGgra6539.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length481
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:212200..214637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX37420
Preferred nameLSM14A
PFAMsFDF,LSM14
Max annot lvl2759|Eukaryota
KEGG koko:K18749
GOsGO:0000226,GO:0000242,GO:0000932,GO:0001817,GO:0001819,GO:0001959,GO:0001961,GO:0002218,GO:0002221,GO:0002252,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002753,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003725,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006417,GO:0006446,GO:0006950,GO:0006952,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0008150,GO:0009605,GO:0009607,GO:0009615,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010646,GO:0010647,GO:0015630,GO:0016043,GO:0017148,GO:0017151,GO:0019222,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0030029,GO:0030036,GO:0030522,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031347,GO:0031349,GO:0031369,GO:0031370,GO:0032268,GO:0032269,GO:0032991,GO:0033962,GO:0034063,GO:0034248,GO:0034249,GO:0034622,GO:0035556,GO:0035770,GO:0036464,GO:0039528,GO:0039529,GO:0043186,GO:0043207,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044764,GO:0045088,GO:0045089,GO:0045169,GO:0045495,GO:0045947,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051233,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060293,GO:0060338,GO:0060340,GO:0060759,GO:0060760,GO:0065003,GO:0065007,GO:0070925,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0097159,GO:0098542,GO:0098586,GO:1901363,GO:1904688,GO:1904689,GO:1990124,GO:1990904,GO:2000112,GO:2000113,GO:2000765,GO:2000766
Evalue4.3e-24
EggNOG OGsKOG1073@1|root,KOG1073@2759|Eukaryota
Descriptioncytoplasmic mRNA processing body assembly
COG categoryS
BRITEko00000,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6539Ggra6539Gracilaria gracilis GNS1m malegenetig00000081_pilon 212200..214637 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6539.t1Ggra6539.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 212200..214637 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6539.t1.stop1Ggra6539.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 212200..212202 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6539.t1.CDS1Ggra6539.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 212200..212915 -
Ggra6539.t1.CDS2Ggra6539.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000081_pilon 213058..213317 -
Ggra6539.t1.CDS3Ggra6539.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000081_pilon 213664..213807 -
Ggra6539.t1.CDS4Ggra6539.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000081_pilon 214315..214637 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6539.t1.exon1Ggra6539.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 212200..212915 -
Ggra6539.t1.exon2Ggra6539.t1.exon2Gracilaria gracilis GNS1m maleexontig00000081_pilon 213058..213317 -
Ggra6539.t1.exon3Ggra6539.t1.exon3Gracilaria gracilis GNS1m maleexontig00000081_pilon 213664..213807 -
Ggra6539.t1.exon4Ggra6539.t1.exon4Gracilaria gracilis GNS1m maleexontig00000081_pilon 214315..214637 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6539.t1.intron1Ggra6539.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000081_pilon 212916..213057 -
Ggra6539.t1.intron2Ggra6539.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000081_pilon 213318..213663 -
Ggra6539.t1.intron3Ggra6539.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000081_pilon 213808..214314 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6539.t1.start1Ggra6539.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 214635..214637 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6539.t1 ID=Ggra6539.t1|Name=Ggra6539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=481bp
MATQQPQQPQQPSHAAPSAPPSSAPPSSSSSSSSSVPYVGSRISLISKSA
IRYVGTLYTIDTGASTVALKDVRSFGTEGRSRAGGPVQPSDRVFSYIVFH
GADIRDLHNERMERPEQAPVAPLYDRNKSFFDELVPEKEMRGERNAAQRR
QTDVETAPPTKHVFPLRPSAAAATMAAAARDDVMDVEAVARDADALLLDA
RAELHSHLRAHAVHRLVPPQSRVLIVDAAVPALCAFRALRDNDVRAAAVL
HDGALCAMLTLATALHAACEPLLLARPLAAFVSRSAVLPLVSVSADAPQL
HAARLLSQTASPPLAVMHGSEPLHWLFAERLLALLEPRFRDAPFLQCTIR
TLRIGRYSDITTADVSMRVHDAARIMVARGLDSLPVTANGVVCGVLDGEL
VGAAVVAAAAAAGAADVPSVAAAQIAAFMRPAAVCSRDDTLHAVLSKLGH
GCRRVFVADQQRVVGVIGLRHLLRFFLPHF*
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spliced messenger RNA

>Ggra6539.t1 ID=Ggra6539.t1|Name=Ggra6539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1443bp|location=Sequence derived from alignment at tig00000081_pilon:212200..214637- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACCCAACAGCCGCAACAGCCGCAGCAGCCGTCGCACGCAGCGCC
GTCGGCGCCGCCGTCGTCGGCGCCGCCGTCCTCGTCCTCGTCGTCGTCGT
CGTCCGTGCCGTACGTGGGATCGCGCATCTCGCTCATCTCCAAGTCGGCC
ATTCGCTACGTCGGCACTCTGTACACCATCGACACCGGCGCGTCGACGGT
GGCGCTCAAGGACGTGCGCTCGTTCGGCACGGAGGGTCGCTCGCGCGCCG
GCGGCCCCGTGCAGCCTTCCGACCGCGTCTTCTCGTACATTGTGTTCCAC
GGCGCCGACATCCGCGACCTGCACAACGAGCGCATGGAGCGGCCGGAGCA
GGCGCCCGTGGCGCCGCTGTACGACCGCAACAAGAGCTTCTTCGACGAGC
TGGTGCCGGAGAAGGAGATGCGCGGCGAGCGCAACGCGGCGCAGCGCCGC
CAGACGGACGTGGAGACCGCGCCGCCCACAAAGCACGTCTTCCCCCTCCG
CCCCTCCGCCGCCGCCGCGACGATGGCGGCCGCGGCGCGCGATGACGTAA
TGGACGTTGAGGCGGTGGCGCGCGACGCCGACGCGCTGCTGCTGGACGCG
CGCGCCGAGCTGCACAGCCACCTACGCGCGCACGCCGTGCACCGTCTGGT
GCCGCCGCAGTCGCGCGTGCTCATCGTCGACGCCGCCGTGCCCGCGCTGT
GCGCCTTTCGCGCCCTGCGCGACAACGATGTCCGCGCCGCTGCCGTGCTG
CACGACGGCGCGCTGTGCGCCATGCTCACGCTCGCCACCGCGCTGCACGC
CGCGTGCGAGCCGCTGCTGCTGGCGCGCCCGCTGGCCGCCTTCGTGTCGC
GTTCGGCCGTACTGCCGCTGGTGTCCGTGTCGGCCGACGCGCCGCAGCTG
CACGCCGCGCGCCTGCTGTCGCAGACCGCGTCGCCGCCACTGGCCGTCAT
GCACGGCTCCGAGCCGCTGCACTGGCTGTTTGCTGAGCGCCTGCTGGCGC
TGCTGGAGCCGCGCTTCCGCGACGCCCCTTTCCTGCAATGCACCATTCGC
ACGCTGCGCATCGGCCGCTACTCGGATATCACCACCGCCGACGTGTCCAT
GCGCGTGCATGACGCCGCGCGCATCATGGTGGCTAGGGGGCTTGACTCGC
TGCCCGTCACCGCCAACGGCGTCGTGTGCGGCGTGCTGGACGGCGAGCTT
GTGGGCGCCGCCGTCGTGGCTGCTGCTGCTGCTGCTGGCGCCGCCGATGT
GCCGTCGGTCGCCGCCGCGCAAATCGCCGCCTTCATGCGCCCCGCCGCCG
TGTGCAGTAGGGATGATACGCTGCACGCCGTGCTTTCAAAGCTTGGCCAC
GGCTGTCGCCGCGTGTTTGTGGCTGATCAGCAGCGCGTCGTCGGTGTCAT
TGGCCTGCGTCACTTGCTGCGCTTCTTCTTGCCGCACTTTTAA
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protein sequence of Ggra6539.t1

>Ggra6539.t1 ID=Ggra6539.t1|Name=Ggra6539.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=481bp
MATQQPQQPQQPSHAAPSAPPSSAPPSSSSSSSSSVPYVGSRISLISKSA
IRYVGTLYTIDTGASTVALKDVRSFGTEGRSRAGGPVQPSDRVFSYIVFH
GADIRDLHNERMERPEQAPVAPLYDRNKSFFDELVPEKEMRGERNAAQRR
QTDVETAPPTKHVFPLRPSAAAATMAAAARDDVMDVEAVARDADALLLDA
RAELHSHLRAHAVHRLVPPQSRVLIVDAAVPALCAFRALRDNDVRAAAVL
HDGALCAMLTLATALHAACEPLLLARPLAAFVSRSAVLPLVSVSADAPQL
HAARLLSQTASPPLAVMHGSEPLHWLFAERLLALLEPRFRDAPFLQCTIR
TLRIGRYSDITTADVSMRVHDAARIMVARGLDSLPVTANGVVCGVLDGEL
VGAAVVAAAAAAGAADVPSVAAAQIAAFMRPAAVCSRDDTLHAVLSKLGH
GCRRVFVADQQRVVGVIGLRHLLRFFLPHF*
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mRNA from alignment at tig00000081_pilon:212200..214637-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6539.t1 ID=Ggra6539.t1|Name=Ggra6539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2438bp|location=Sequence derived from alignment at tig00000081_pilon:212200..214637- (Gracilaria gracilis GNS1m male)
ATGGCCACCCAACAGCCGCAACAGCCGCAGCAGCCGTCGCACGCAGCGCC
GTCGGCGCCGCCGTCGTCGGCGCCGCCGTCCTCGTCCTCGTCGTCGTCGT
CGTCCGTGCCGTACGTGGGATCGCGCATCTCGCTCATCTCCAAGTCGGCC
ATTCGCTACGTCGGCACTCTGTACACCATCGACACCGGCGCGTCGACGGT
GGCGCTCAAGGACGTGCGCTCGTTCGGCACGGAGGGTCGCTCGCGCGCCG
GCGGCCCCGTGCAGCCTTCCGACCGCGTCTTCTCGTACATTGTGTTCCAC
GGCGCCGACATCCGCGACCTGCAGTTCCTGGACCCGCCGCCCACGCCCGC
GTCCGGCTCCGCGCCGGCTCCGCCGCCTGTGGCTGCTGCCGCCGCGTCGC
AGCAGCAGCAGCCGGCGCTACCGCCCGCGCCGAAACCATCTGTGGCGCGC
GCGCCGCCGCCGGTGCGGACCCCCGCTGCAGCGCGCGCGCCGCCGCCGCC
GCAACCGGCGGGCGGGAAGCGAGGCGCGGCGCTGCGCGGGCCAACGCCGC
GTGCGTGGGGACCGCCGCCCACCGTGCGCGCGCGCGAAGCGCCCGGCAAC
GCACCCAAGCGTGGCGGCGTCGCGCAGACGCGCCCAGCGGCACAGCCAGC
TGCGCCAAAGCAGCGCGACGACGCGCGACGCGCGCCCCCAGGCAGCAACG
ACGAGCGGGCGCGCGCAGGCGAGGGGCGCAGCGGCGTGCGGCGCGGGCGG
GGACGGCGACGGGGCGGCGGTGGCAGCAGCAACGCGGCGGCGCTGCGCAT
CCCCGACGAGGACTTTGACTTTGAGCGCAGCAACGAGCGCATGGAGCGGC
CGGAGCAGGCGCCCGTGGCGCCGCTGTACGACCGCAACAAGAGCTTCTTC
GACGAGCTGGTGCCGGAGAAGGAGATGCGCGGCGAGCGCAACGCGGCGCA
GCGCCGCCAGACGGACGTGGAGACGTTCGGCGATGCGGCGGTGGCCAGTG
CGGCGCGGCGCGGCGCGCGTACTCGCTCGCGCGCGCGCAGGGGCCGCGGA
CGCGCGCGTACGCGCCAGCAGCCACCGCGCGAGGCGGCGCGGTAGACGCG
CTCGCGCGTACGCAGGTGGCGGGCGGTAGCCGCCTCTCGCGGCTACTGCA
GCTCAAATAACGCCATGCACGGCGTTATTTTGTGTACGGCCGCCGTCGCA
GGGGCGCCGAAGCGTAAAGCGCGTCTTCCTTCCGCCGATACTGAGGCGCT
CAACCGCAAAGCGCCGAACCGCAAAGCGCCGACCGCAAAGCGCCGACCGC
AAAGCGCGCTGACCGCAAAGCGCGCCGCCCACAAAGCACGTCTTCCCCCT
CCGCCCCTCCGCCGCCGCCGCGACGATGGCGGCCGCGGCGCGCGATGACG
TAATGGACGTTGAGGCGGTGGCGCGCGACGCCGACGCGCTGCTGCTGGAC
GCGCGCGCCGAGCTGCACAGCCACCTACGCGCGCACGCCGTGCACCGTCT
GGTGCCGCCGCAGTCGCGCGTGCTCATCGTCGACGCCGCCGTGCCCGCGC
TGTGCGCCTTTCGCGCCCTGCGCGACAACGGTACGTTCGCGCCCGCGCCC
TCCGCCCGTCCGCGCCGCCGCCGCTGCTGCTGACGCCGCCCGCTGACGCC
GCTGCTGCCCGCTGTCCGCTGCCGCTGCTGCTGCTGCTGCTGCCGCCGCT
GCCGCCTGCGCCTCTGCCGTAGATGTCCGCGCCGCTGCCGTGCTGCACGA
CGGCGCGCTGTGCGCCATGCTCACGCTCGCCACCGCGCTGCACGCCGCGT
GCGAGCCGCTGCTGCTGGCGCGCCCGCTGGCCGCCTTCGTGTCGCGTTCG
GCCGTACTGCCGCTGGTGTCCGTGTCGGCCGACGCGCCGCAGCTGCACGC
CGCGCGCCTGCTGTCGCAGACCGCGTCGCCGCCACTGGCCGTCATGCACG
GCTCCGAGCCGCTGCACTGGCTGTTTGCTGAGCGCCTGCTGGCGCTGCTG
GAGCCGCGCTTCCGCGACGCCCCTTTCCTGCAATGCACCATTCGCACGCT
GCGCATCGGCCGCTACTCGGATATCACCACCGCCGACGTGTCCATGCGCG
TGCATGACGCCGCGCGCATCATGGTGGCTAGGGGGCTTGACTCGCTGCCC
GTCACCGCCAACGGCGTCGTGTGCGGCGTGCTGGACGGCGAGCTTGTGGG
CGCCGCCGTCGTGGCTGCTGCTGCTGCTGCTGGCGCCGCCGATGTGCCGT
CGGTCGCCGCCGCGCAAATCGCCGCCTTCATGCGCCCCGCCGCCGTGTGC
AGTAGGGATGATACGCTGCACGCCGTGCTTTCAAAGCTTGGCCACGGCTG
TCGCCGCGTGTTTGTGGCTGATCAGCAGCGCGTCGTCGGTGTCATTGGCC
TGCGTCACTTGCTGCGCTTCTTCTTGCCGCACTTTTAA
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Coding sequence (CDS) from alignment at tig00000081_pilon:212200..214637-

>Ggra6539.t1 ID=Ggra6539.t1|Name=Ggra6539.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1443bp|location=Sequence derived from alignment at tig00000081_pilon:212200..214637- (Gracilaria gracilis GNS1m male)
ATGGCCACCCAACAGCCGCAACAGCCGCAGCAGCCGTCGCACGCAGCGCC
GTCGGCGCCGCCGTCGTCGGCGCCGCCGTCCTCGTCCTCGTCGTCGTCGT
CGTCCGTGCCGTACGTGGGATCGCGCATCTCGCTCATCTCCAAGTCGGCC
ATTCGCTACGTCGGCACTCTGTACACCATCGACACCGGCGCGTCGACGGT
GGCGCTCAAGGACGTGCGCTCGTTCGGCACGGAGGGTCGCTCGCGCGCCG
GCGGCCCCGTGCAGCCTTCCGACCGCGTCTTCTCGTACATTGTGTTCCAC
GGCGCCGACATCCGCGACCTGCACAACGAGCGCATGGAGCGGCCGGAGCA
GGCGCCCGTGGCGCCGCTGTACGACCGCAACAAGAGCTTCTTCGACGAGC
TGGTGCCGGAGAAGGAGATGCGCGGCGAGCGCAACGCGGCGCAGCGCCGC
CAGACGGACGTGGAGACCGCGCCGCCCACAAAGCACGTCTTCCCCCTCCG
CCCCTCCGCCGCCGCCGCGACGATGGCGGCCGCGGCGCGCGATGACGTAA
TGGACGTTGAGGCGGTGGCGCGCGACGCCGACGCGCTGCTGCTGGACGCG
CGCGCCGAGCTGCACAGCCACCTACGCGCGCACGCCGTGCACCGTCTGGT
GCCGCCGCAGTCGCGCGTGCTCATCGTCGACGCCGCCGTGCCCGCGCTGT
GCGCCTTTCGCGCCCTGCGCGACAACGATGTCCGCGCCGCTGCCGTGCTG
CACGACGGCGCGCTGTGCGCCATGCTCACGCTCGCCACCGCGCTGCACGC
CGCGTGCGAGCCGCTGCTGCTGGCGCGCCCGCTGGCCGCCTTCGTGTCGC
GTTCGGCCGTACTGCCGCTGGTGTCCGTGTCGGCCGACGCGCCGCAGCTG
CACGCCGCGCGCCTGCTGTCGCAGACCGCGTCGCCGCCACTGGCCGTCAT
GCACGGCTCCGAGCCGCTGCACTGGCTGTTTGCTGAGCGCCTGCTGGCGC
TGCTGGAGCCGCGCTTCCGCGACGCCCCTTTCCTGCAATGCACCATTCGC
ACGCTGCGCATCGGCCGCTACTCGGATATCACCACCGCCGACGTGTCCAT
GCGCGTGCATGACGCCGCGCGCATCATGGTGGCTAGGGGGCTTGACTCGC
TGCCCGTCACCGCCAACGGCGTCGTGTGCGGCGTGCTGGACGGCGAGCTT
GTGGGCGCCGCCGTCGTGGCTGCTGCTGCTGCTGCTGGCGCCGCCGATGT
GCCGTCGGTCGCCGCCGCGCAAATCGCCGCCTTCATGCGCCCCGCCGCCG
TGTGCAGTAGGGATGATACGCTGCACGCCGTGCTTTCAAAGCTTGGCCAC
GGCTGTCGCCGCGTGTTTGTGGCTGATCAGCAGCGCGTCGTCGGTGTCAT
TGGCCTGCGTCACTTGCTGCGCTTCTTCTTGCCGCACTTTTAA
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