Ggra9182.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9182.t1
Unique NameGgra9182.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length231
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:315785..316477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMC072CT
Preferred nameTMED10
PFAMsEMP24_GP25L
Max annot lvl2759|Eukaryota
KEGG koko:K20347,ko:K20352,ko:K20878
KEGG TC1.I.1.1.3,9.B.188,9.B.188.1.2
GOsGO:0000139,GO:0000149,GO:0000322,GO:0000323,GO:0000324,GO:0001655,GO:0001822,GO:0002790,GO:0003002,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0005886,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007030,GO:0007154,GO:0007267,GO:0007275,GO:0007389,GO:0008104,GO:0008150,GO:0008565,GO:0009306,GO:0009953,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0019222,GO:0019905,GO:0022607,GO:0023052,GO:0023061,GO:0030133,GO:0030134,GO:0030135,GO:0030136,GO:0030137,GO:0030140,GO:0030141,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030667,GO:0031090,GO:0031224,GO:0031323,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033036,GO:0033116,GO:0034248,GO:0034613,GO:0034622,GO:0035459,GO:0035964,GO:0042175,GO:0042221,GO:0042588,GO:0042589,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043279,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044877,GO:0045055,GO:0045184,GO:0046662,GO:0046903,GO:0046907,GO:0048042,GO:0048193,GO:0048194,GO:0048199,GO:0048200,GO:0048205,GO:0048207,GO:0048208,GO:0048513,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050795,GO:0050896,GO:0051171,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051259,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060255,GO:0061024,GO:0061355,GO:0065003,GO:0065007,GO:0070727,GO:0070765,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072001,GO:0080090,GO:0090114,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098797,GO:0098805,GO:0098827,GO:0099503,GO:0198738,GO:1901698,GO:1902003,GO:1902991,GO:2000241
Evalue4.94e-06
EggNOG OGsKOG1691@1|root,KOG1691@2759|Eukaryota
EC2.7.11.1
Descriptionprotein transport
COG categoryT
BRITEko00000,ko01000,ko01001,ko02000,ko03036,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9182Ggra9182Gracilaria gracilis GNS1m malegenetig00000075_pilon 315785..316477 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9182.t1.stop1Ggra9182.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 315785..315787 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9182.t1.CDS1Ggra9182.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 315785..316477 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9182.t1.exon1Ggra9182.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 315785..316477 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9182.t1.start1Ggra9182.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 316475..316477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9182.t1Ggra9182.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 315785..316477 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9182.t1 ID=Ggra9182.t1|Name=Ggra9182.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=231bp
MGAHSFIALFMLLLLCCRCDALRFYIHDRERRCFQFEAPYGARVLGHRSI
ANGKGQAQLSLDIKSTTGTRVYESHSGDPKDAMFSFVTPPYHSSDEHYEQ
YDYEMDDQMATFDACVMLTYDQTMHAAQHGKRAVTFWVQLDHRAVKSDVH
ATTEGVTRITHSLSQMHSTLNMLLADLAALKMREQRLVKRTQRMALSLRN
FAVLSIMVLMTVSYFQFKHYKKLFTAKKII*
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spliced messenger RNA

>Ggra9182.t1 ID=Ggra9182.t1|Name=Ggra9182.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=693bp|location=Sequence derived from alignment at tig00000075_pilon:315785..316477- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGCGCACTCTTTCATAGCGTTGTTTATGCTACTGCTGTTATGCTG
CCGTTGTGATGCACTGAGGTTCTACATCCACGACCGTGAGAGAAGGTGCT
TTCAATTTGAGGCGCCGTATGGAGCACGCGTGCTTGGCCATCGATCGATT
GCCAACGGAAAGGGACAGGCGCAACTATCGCTAGACATCAAGAGCACTAC
GGGCACGCGCGTCTACGAGTCACACAGTGGCGATCCGAAAGATGCCATGT
TTTCCTTCGTGACGCCGCCGTACCATTCTTCCGACGAGCACTACGAACAG
TATGACTACGAAATGGATGACCAGATGGCCACATTCGACGCGTGTGTAAT
GCTCACATACGACCAAACAATGCATGCGGCGCAACACGGCAAGCGTGCCG
TCACGTTTTGGGTTCAGCTGGATCATAGAGCCGTCAAGTCAGACGTGCAT
GCTACCACAGAAGGAGTGACGCGTATCACCCATTCGTTGAGCCAGATGCA
CTCAACTCTGAACATGCTTCTGGCGGACTTGGCCGCTTTGAAAATGCGTG
AACAACGTCTGGTGAAACGCACGCAAAGAATGGCTCTTAGTCTCAGAAAC
TTTGCGGTACTTTCCATCATGGTGTTGATGACTGTGTCGTACTTTCAGTT
CAAGCATTACAAGAAGTTGTTCACCGCCAAGAAAATCATTTAG
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protein sequence of Ggra9182.t1

>Ggra9182.t1 ID=Ggra9182.t1|Name=Ggra9182.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=231bp
MGAHSFIALFMLLLLCCRCDALRFYIHDRERRCFQFEAPYGARVLGHRSI
ANGKGQAQLSLDIKSTTGTRVYESHSGDPKDAMFSFVTPPYHSSDEHYEQ
YDYEMDDQMATFDACVMLTYDQTMHAAQHGKRAVTFWVQLDHRAVKSDVH
ATTEGVTRITHSLSQMHSTLNMLLADLAALKMREQRLVKRTQRMALSLRN
FAVLSIMVLMTVSYFQFKHYKKLFTAKKII*
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mRNA from alignment at tig00000075_pilon:315785..316477-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9182.t1 ID=Ggra9182.t1|Name=Ggra9182.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=693bp|location=Sequence derived from alignment at tig00000075_pilon:315785..316477- (Gracilaria gracilis GNS1m male)
ATGGGTGCGCACTCTTTCATAGCGTTGTTTATGCTACTGCTGTTATGCTG
CCGTTGTGATGCACTGAGGTTCTACATCCACGACCGTGAGAGAAGGTGCT
TTCAATTTGAGGCGCCGTATGGAGCACGCGTGCTTGGCCATCGATCGATT
GCCAACGGAAAGGGACAGGCGCAACTATCGCTAGACATCAAGAGCACTAC
GGGCACGCGCGTCTACGAGTCACACAGTGGCGATCCGAAAGATGCCATGT
TTTCCTTCGTGACGCCGCCGTACCATTCTTCCGACGAGCACTACGAACAG
TATGACTACGAAATGGATGACCAGATGGCCACATTCGACGCGTGTGTAAT
GCTCACATACGACCAAACAATGCATGCGGCGCAACACGGCAAGCGTGCCG
TCACGTTTTGGGTTCAGCTGGATCATAGAGCCGTCAAGTCAGACGTGCAT
GCTACCACAGAAGGAGTGACGCGTATCACCCATTCGTTGAGCCAGATGCA
CTCAACTCTGAACATGCTTCTGGCGGACTTGGCCGCTTTGAAAATGCGTG
AACAACGTCTGGTGAAACGCACGCAAAGAATGGCTCTTAGTCTCAGAAAC
TTTGCGGTACTTTCCATCATGGTGTTGATGACTGTGTCGTACTTTCAGTT
CAAGCATTACAAGAAGTTGTTCACCGCCAAGAAAATCATTTAG
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Coding sequence (CDS) from alignment at tig00000075_pilon:315785..316477-

>Ggra9182.t1 ID=Ggra9182.t1|Name=Ggra9182.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=693bp|location=Sequence derived from alignment at tig00000075_pilon:315785..316477- (Gracilaria gracilis GNS1m male)
ATGGGTGCGCACTCTTTCATAGCGTTGTTTATGCTACTGCTGTTATGCTG
CCGTTGTGATGCACTGAGGTTCTACATCCACGACCGTGAGAGAAGGTGCT
TTCAATTTGAGGCGCCGTATGGAGCACGCGTGCTTGGCCATCGATCGATT
GCCAACGGAAAGGGACAGGCGCAACTATCGCTAGACATCAAGAGCACTAC
GGGCACGCGCGTCTACGAGTCACACAGTGGCGATCCGAAAGATGCCATGT
TTTCCTTCGTGACGCCGCCGTACCATTCTTCCGACGAGCACTACGAACAG
TATGACTACGAAATGGATGACCAGATGGCCACATTCGACGCGTGTGTAAT
GCTCACATACGACCAAACAATGCATGCGGCGCAACACGGCAAGCGTGCCG
TCACGTTTTGGGTTCAGCTGGATCATAGAGCCGTCAAGTCAGACGTGCAT
GCTACCACAGAAGGAGTGACGCGTATCACCCATTCGTTGAGCCAGATGCA
CTCAACTCTGAACATGCTTCTGGCGGACTTGGCCGCTTTGAAAATGCGTG
AACAACGTCTGGTGAAACGCACGCAAAGAATGGCTCTTAGTCTCAGAAAC
TTTGCGGTACTTTCCATCATGGTGTTGATGACTGTGTCGTACTTTCAGTT
CAAGCATTACAAGAAGTTGTTCACCGCCAAGAAAATCATTTAG
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