Ggra9242.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9242.t1
Unique NameGgra9242.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length178
Homology
BLAST of Ggra9242.t1 vs. uniprot
Match: A0A2V3IE70 (NifU-like protein 2, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IE70_9FLOR)

HSP 1 Score: 299 bits (765), Expect = 3.870e-101
Identity = 150/177 (84.75%), Postives = 167/177 (94.35%), Query Frame = 0
Query:    1 MVDTEPKISPVPTESTPADSADVLELSWENVDRVLDEMRPYLMSDGGNVSIADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEPEGPPLNEEAIEKTLDEVRPFLNVAGGTIELLSLHADSAVPTATLKMTGSGAAINSVKVEITHRLKRNYVKLANVVFQ 177
            MVDTEPK+SPVPTES+P+ ++D+LEL+  NV+ VLDEMRPYLMSDGGNVSIA+IDGATVKLQLEGACG+CPSSTMTMKMGLERRLRE+IPEIE+VIQAEPEGPPL EE IE TLDEVRPFLNVAGGTI+L+ L+ DSAVPTA LKMTGSGAAINSVKVEITHRLKRN+VKLANVVF+
Sbjct:   43 MVDTEPKVSPVPTESSPSQTSDILELTEANVEMVLDEMRPYLMSDGGNVSIAEIDGATVKLQLEGACGTCPSSTMTMKMGLERRLRERIPEIEEVIQAEPEGPPLTEEGIENTLDEVRPFLNVAGGTIQLIDLNVDSAVPTARLKMTGSGAAINSVKVEITHRLKRNWVKLANVVFE 219          
BLAST of Ggra9242.t1 vs. uniprot
Match: R7QJT2 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJT2_CHOCR)

HSP 1 Score: 228 bits (580), Expect = 3.470e-74
Identity = 116/135 (85.93%), Postives = 126/135 (93.33%), Query Frame = 0
Query:   43 MSDGGNVSIADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEPEGPPLNEEAIEKTLDEVRPFLNVAGGTIELLSLHADSAVPTATLKMTGSGAAINSVKVEITHRLKRNYVKLANVVFQ 177
            MSDGGNVS++DIDGATVKLQLEGACGSCPSSTMTMKMGLERRLRE+IPEIE V+Q EP+G PL+EE IE TLDEVRPFLNVAGGTIEL+ L  DSAVPTA L+MTGSGAAINSVKVEITHRLKRN+VKLANVVF+
Sbjct:    1 MSDGGNVSVSDIDGATVKLQLEGACGSCPSSTMTMKMGLERRLRERIPEIEAVVQVEPDGIPLSEEGIEGTLDEVRPFLNVAGGTIELIELLKDSAVPTARLRMTGSGAAINSVKVEITHRLKRNWVKLANVVFE 135          
BLAST of Ggra9242.t1 vs. uniprot
Match: A0A5J4YML6 (NifU-like protein 2, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YML6_PORPP)

HSP 1 Score: 221 bits (564), Expect = 1.650e-70
Identity = 114/158 (72.15%), Postives = 133/158 (84.18%), Query Frame = 0
Query:   20 SADVLELSWENVDRVLDEMRPYLMSDGGNVSIADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEPEGPPLNEEAIEKTLDEVRPFLNVAGGTIELLSLHA-DSAVPTATLKMTGSGAAINSVKVEITHRLKRNYVKLANVVF 176
            + + L L+WENV+ VLDEMRPYL SDGG+V IADIDGATV+L+L GACG+CPSSTMTMKMGLERRL EKIPEIE V+Q EP+GP L EE ++K L EVRPFLNVAGG+IEL+S+   DSA PT  L MTG+GAAINSVKVEIT RL+RN+ KL+ VVF
Sbjct:   65 TTEKLPLTWENVELVLDEMRPYLKSDGGDVKIADIDGATVRLELVGACGTCPSSTMTMKMGLERRLLEKIPEIEAVVQVEPQGPELVEENVDKVLAEVRPFLNVAGGSIELVSISGIDSAQPTLRLNMTGTGAAINSVKVEITQRLRRNFPKLSQVVF 222          
BLAST of Ggra9242.t1 vs. uniprot
Match: A0A1X6PJ05 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PJ05_PORUM)

HSP 1 Score: 217 bits (553), Expect = 1.790e-69
Identity = 109/163 (66.87%), Postives = 131/163 (80.37%), Query Frame = 0
Query:   15 STPADSADVLELSWENVDRVLDEMRPYLMSDGGNVSIADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEPEGPPLNEEAIEKTLDEVRPFLNVAGGTIELLSLHADSAVPTATLKMTGSGAAINSVKVEITHRLKRNYVKLANVVFQ 177
            S+    + VL L+  NV+ VLDE+RPYLM+DGGNVS+A+IDGATV+L LEGACGSCPSS MTMKMG+ERRL E IPEIE+V Q EP GPPL  E +E  L+EVRPFLNVAGG IEL+ +  DSA+P   LKM G+GAAINSVK+EIT RLKRN+ K++ VVF+
Sbjct:   16 SSSTSPSSVLPLTLANVETVLDELRPYLMADGGNVSVAEIDGATVRLALEGACGSCPSSMMTMKMGIERRLLEAIPEIEEVCQVEPAGPPLTPEGVEGVLNEVRPFLNVAGGGIELVKMTPDSALPVVRLKMQGTGAAINSVKIEITQRLKRNFPKISQVVFE 178          
BLAST of Ggra9242.t1 vs. uniprot
Match: A0A7S0NZT0 (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NZT0_9EUKA)

HSP 1 Score: 212 bits (540), Expect = 2.060e-66
Identity = 105/173 (60.69%), Postives = 134/173 (77.46%), Query Frame = 0
Query:    5 EPKISPVPTESTPADSADVLELSWENVDRVLDEMRPYLMSDGGNVSIADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEPEGPPLNEEAIEKTLDEVRPFLNVAGGTIELLSLHADSAVPTATLKMTGSGAAINSVKVEITHRLKRNYVKLANVVFQ 177
            EP +SP    +  A  +  L L+ ENV+RVLDEMRPYLM+DGGNV++A+IDG  V+L+L+GACG+CPSSTMTMKMGLER LREKIPEI +V Q  P+GP L EE +E  L+E+RPFL +AGG++EL+SL     +PTA L ++GSGA INSV+VEI  RLKRN+  LANV ++
Sbjct:   84 EPVVSPFEVSTVDAPVSGPLPLTLENVERVLDEMRPYLMADGGNVAVAEIDGGIVRLELQGACGTCPSSTMTMKMGLERGLREKIPEIVEVEQVAPDGPQLTEEGVETVLEEIRPFLKMAGGSVELVSLEPTGVLPTACLSISGSGATINSVRVEIAQRLKRNFPSLANVTWE 256          
BLAST of Ggra9242.t1 vs. uniprot
Match: A0A7S1TIV8 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TIV8_9RHOD)

HSP 1 Score: 205 bits (521), Expect = 1.230e-64
Identity = 101/158 (63.92%), Postives = 130/158 (82.28%), Query Frame = 0
Query:   20 SADVLELSWENVDRVLDEMRPYLMSDGGNVSIADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEPEGPPLNEEAIEKTLDEVRPFLNVAGGTIELLSLHA-DSAVPTATLKMTGSGAAINSVKVEITHRLKRNYVKLANVVF 176
            + + L L+WENV+ VLDE+RPYL+SDGGNVSIADIDGA+VKL LEGACG+CPSS MTM+MG+ER+L+E+IPEIE V +  P+GP +NEE IEK L+EVRPFL +AGGT+ L+S++  ++  PT  L+MTG+GAAI SV +EI  RLKRN+ KL+ V F
Sbjct:   14 TTETLPLTWENVETVLDEVRPYLISDGGNVSIADIDGASVKLTLEGACGTCPSSVMTMRMGIERKLKERIPEIESVEEMIPQGPEINEENIEKVLEEVRPFLRIAGGTLNLVSINGLETPQPTIRLRMTGAGAAIQSVVMEIQQRLKRNFPKLSQVFF 171          
BLAST of Ggra9242.t1 vs. uniprot
Match: A0A7S0LHP7 (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LHP7_9EUKA)

HSP 1 Score: 202 bits (515), Expect = 3.090e-63
Identity = 106/173 (61.27%), Postives = 133/173 (76.88%), Query Frame = 0
Query:    5 EPKISPVPTESTPADSADV---LELSWENVDRVLDEMRPYLMSDGGNVSIADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEPEGPPLNEEAIEKTLDEVRPFLNVAGGTIELLSLHADSAVPTATLKMTGSGAAINSVKVEITHRLKRNYVKLANV 174
            EP +SP   EST + +  V   L L+ ENV+ VLDEMRPYLM+DGGNV++A+I    V+L+L+GACG+CPSSTMTMKMGLER LREKIPEI +V Q  P+GP L EE +E  L+E+RPFL +AGG+++L+SL A   +PTA L +TGSGA INSV+VEI  RLKRN+  LANV
Sbjct:   38 EPLVSPF--ESTTSSAGPVTGPLPLTLENVELVLDEMRPYLMADGGNVAVAEIADGIVRLELQGACGTCPSSTMTMKMGLERGLREKIPEIVEVEQVAPDGPQLTEEGVEGVLEEIRPFLKMAGGSVDLVSLEATGVLPTACLSITGSGATINSVRVEIAQRLKRNFPSLANV 208          
BLAST of Ggra9242.t1 vs. uniprot
Match: A0A7S4B135 (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B135_CHRCT)

HSP 1 Score: 203 bits (517), Expect = 5.890e-63
Identity = 99/154 (64.29%), Postives = 126/154 (81.82%), Query Frame = 0
Query:   24 LELSWENVDRVLDEMRPYLMSDGGNVSIADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEPEGPPLNEEAIEKTLDEVRPFLNVAGGTIELLSLHADSAVPTATLKMTGSGAAINSVKVEITHRLKRNYVKLANVVFQ 177
            L L+ ENV+ VLDEMRPYLM+DGGNV++ADIDG  V+L+L+GACG+CPSSTMTMKMGLER LREKIPEI +V Q  P+GP L EE+IE+ L+E+RPFL +AGGT+EL SL     +PT +L+++GSGA INSV+ EI  RLKRN+  LA+V ++
Sbjct:  101 LALTLENVELVLDEMRPYLMADGGNVAVADIDGGVVRLELQGACGTCPSSTMTMKMGLERGLREKIPEIVEVEQVAPDGPQLTEESIEEVLEEIRPFLKMAGGTVELASLEPAGVMPTCSLRISGSGATINSVRAEIAQRLKRNFPTLASVTWE 254          
BLAST of Ggra9242.t1 vs. uniprot
Match: M2WRR0 (Iron-sulfur cluster scaffold protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WRR0_GALSU)

HSP 1 Score: 198 bits (504), Expect = 1.120e-61
Identity = 100/158 (63.29%), Postives = 130/158 (82.28%), Query Frame = 0
Query:   18 ADSADVLELSWENVDRVLDEMRPYLMSDGGNVSIADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEPEGPPLNEEAIEKTLDEVRPFLNVAGGTIELLSLHA-DSAVPTATLKMTGSGAAINSVKVEITHRLKRNYVKLANV 174
            ADSA  L L+ ENV++VL+E+RPYL++DGGNVS+  IDGATV+L LEGACGSCPSST+T++MG+E RL+EKIPEIE V+Q E  GP LNE+ I+  LDEVRPFL +AGG I+L+ ++  DS  P+ +LKM+G GAA++SV++EI HRLKRN+ KL NV
Sbjct:   43 ADSA--LPLTKENVEQVLEELRPYLIADGGNVSLTGIDGATVRLTLEGACGSCPSSTVTLRMGIETRLKEKIPEIEAVVQEETMGPELNEQNIDSVLDEVRPFLKIAGGKIDLVGIYGTDSPSPSVSLKMSGGGAAVDSVRLEIIHRLKRNFPKLVNV 198          
BLAST of Ggra9242.t1 vs. uniprot
Match: A0A7S1G1H4 (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G1H4_9STRA)

HSP 1 Score: 196 bits (497), Expect = 5.240e-60
Identity = 102/169 (60.36%), Postives = 134/169 (79.29%), Query Frame = 0
Query:    9 SPVPTESTP-ADSA------DVLELSWENVDRVLDEMRPYLMSDGGNVSIADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEPEGPPLNEEAIEKTLDEVRPFLNVAGGTIELLSLHADSAV-PTATLKMTGSGAAINSVKVEITHRLKRNYV 169
            S VP+E  P AD +       +L+L+ ENV+ VLDEMRP+L +DGG+VSI DIDG  VKLQLEGACG+CPSST TMKMGLERRL+E+IPEI++V+QA PEGPPLNE+ I   LD VRPFLNVAGG+I++ S+  + +V P  TL+MTG+ A++NSVK+EI  R++R+++
Sbjct:   58 SGVPSEEAPPADPSFLRTDLPILDLTLENVEIVLDEMRPFLQADGGDVSIDDIDGPVVKLQLEGACGTCPSSTQTMKMGLERRLKERIPEIQEVVQAMPEGPPLNEDQINVVLDGVRPFLNVAGGSIDIASISGEMSVQPVITLEMTGASASLNSVKLEIEQRIQRHFM 226          
The following BLAST results are available for this feature:
BLAST of Ggra9242.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IE703.870e-10184.75NifU-like protein 2, chloroplastic n=1 Tax=Gracila... [more]
R7QJT23.470e-7485.93Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A5J4YML61.650e-7072.15NifU-like protein 2, chloroplastic n=1 Tax=Porphyr... [more]
A0A1X6PJ051.790e-6966.87Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0NZT02.060e-6660.69Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S1TIV81.230e-6463.92Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S0LHP73.090e-6361.27Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S4B1355.890e-6364.29Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
M2WRR01.120e-6163.29Iron-sulfur cluster scaffold protein n=1 Tax=Galdi... [more]
A0A7S1G1H45.240e-6060.36Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034904Fe-S cluster assembly domain superfamilyGENE3D3.30.300.130coord: 104..176
e-value: 3.0E-12
score: 48.5
IPR034904Fe-S cluster assembly domain superfamilyGENE3D3.30.300.130coord: 23..101
e-value: 1.2E-29
score: 104.1
IPR034904Fe-S cluster assembly domain superfamilySUPERFAMILY117916Fe-S cluster assembly (FSCA) domain-likecoord: 28..99
IPR034904Fe-S cluster assembly domain superfamilySUPERFAMILY117916Fe-S cluster assembly (FSCA) domain-likecoord: 105..175
IPR001075NIF system FeS cluster assembly, NifU, C-terminalPFAMPF01106NifUcoord: 110..160
e-value: 2.4E-5
score: 24.4
coord: 31..95
e-value: 4.7E-26
score: 90.7
NoneNo IPR availablePANTHERPTHR11178IRON-SULFUR CLUSTER SCAFFOLD PROTEIN NFU-RELATEDcoord: 21..174
NoneNo IPR availablePANTHERPTHR11178:SF25NIFU-LIKE PROTEIN 3, CHLOROPLASTICcoord: 21..174

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:564769..565302 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9242.t1Ggra9242.t1Gracilaria gracilis GNS1m malemRNAtig00000075_pilon 564769..565302 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9242.t1 ID=Ggra9242.t1|Name=Ggra9242.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=178bp
MVDTEPKISPVPTESTPADSADVLELSWENVDRVLDEMRPYLMSDGGNVS
IADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEP
EGPPLNEEAIEKTLDEVRPFLNVAGGTIELLSLHADSAVPTATLKMTGSG
AAINSVKVEITHRLKRNYVKLANVVFQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR034904FSCA_dom_sf
IPR001075NIF_FeS_clus_asmbl_NifU_C