Ggra9242.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9242.t1
Unique NameGgra9242.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length178
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000075_piloncontigtig00000075_pilon:564769..565302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703035.1
Preferred nameNIFU1
PFAMsNifU
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K04567
KEGG ReactionR03658
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006091,GO:0006790,GO:0006950,GO:0006952,GO:0006996,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009657,GO:0009658,GO:0009987,GO:0015979,GO:0016020,GO:0016043,GO:0016226,GO:0019684,GO:0022607,GO:0031163,GO:0032947,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048564,GO:0050896,GO:0051186,GO:0065003,GO:0071840,GO:0071944
Evalue1.83e-60
EggNOG OGsCOG0694@1|root,KOG2358@2759|Eukaryota
EC6.1.1.6
DescriptionNFU1 iron-sulfur cluster scaffold
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9242Ggra9242Gracilaria gracilis GNS1m malegenetig00000075_pilon 564769..565302 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9242.t1.start1Ggra9242.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000075_pilon 564769..564771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9242.t1.CDS1Ggra9242.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000075_pilon 564769..565302 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9242.t1.exon1Ggra9242.t1.exon1Gracilaria gracilis GNS1m maleexontig00000075_pilon 564769..565302 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9242.t1.stop1Ggra9242.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000075_pilon 565300..565302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9242.t1Ggra9242.t1Gracilaria gracilis GNS1m malepolypeptidetig00000075_pilon 564769..565302 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9242.t1 ID=Ggra9242.t1|Name=Ggra9242.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=178bp
MVDTEPKISPVPTESTPADSADVLELSWENVDRVLDEMRPYLMSDGGNVS
IADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEP
EGPPLNEEAIEKTLDEVRPFLNVAGGTIELLSLHADSAVPTATLKMTGSG
AAINSVKVEITHRLKRNYVKLANVVFQ*
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spliced messenger RNA

>Ggra9242.t1 ID=Ggra9242.t1|Name=Ggra9242.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00000075_pilon:564769..565302+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGACACGGAGCCGAAGATCTCGCCTGTGCCGACTGAGTCCACGCC
GGCAGACTCGGCTGACGTGCTGGAGCTCTCGTGGGAGAACGTCGACAGGG
TGCTGGATGAGATGCGCCCGTACCTCATGTCGGACGGAGGCAACGTGTCC
ATTGCCGATATCGATGGCGCCACCGTCAAGCTGCAACTGGAGGGCGCTTG
TGGCTCGTGTCCGTCCAGTACCATGACCATGAAGATGGGGCTTGAGCGTC
GTTTGCGCGAGAAGATTCCTGAGATTGAACAGGTCATTCAGGCAGAGCCG
GAAGGGCCACCGCTCAACGAAGAGGCCATTGAGAAGACGCTTGACGAAGT
CAGACCGTTTCTCAACGTTGCTGGCGGTACCATTGAATTGCTTTCTCTGC
ACGCCGACTCTGCCGTACCCACAGCAACACTCAAGATGACGGGTTCAGGC
GCAGCTATCAATTCGGTCAAGGTTGAGATCACGCATCGTCTAAAACGCAA
TTATGTCAAGCTAGCAAATGTAGTGTTCCAATAA
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protein sequence of Ggra9242.t1

>Ggra9242.t1 ID=Ggra9242.t1|Name=Ggra9242.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=178bp
MVDTEPKISPVPTESTPADSADVLELSWENVDRVLDEMRPYLMSDGGNVS
IADIDGATVKLQLEGACGSCPSSTMTMKMGLERRLREKIPEIEQVIQAEP
EGPPLNEEAIEKTLDEVRPFLNVAGGTIELLSLHADSAVPTATLKMTGSG
AAINSVKVEITHRLKRNYVKLANVVFQ*
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mRNA from alignment at tig00000075_pilon:564769..565302+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9242.t1 ID=Ggra9242.t1|Name=Ggra9242.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=534bp|location=Sequence derived from alignment at tig00000075_pilon:564769..565302+ (Gracilaria gracilis GNS1m male)
ATGGTGGACACGGAGCCGAAGATCTCGCCTGTGCCGACTGAGTCCACGCC
GGCAGACTCGGCTGACGTGCTGGAGCTCTCGTGGGAGAACGTCGACAGGG
TGCTGGATGAGATGCGCCCGTACCTCATGTCGGACGGAGGCAACGTGTCC
ATTGCCGATATCGATGGCGCCACCGTCAAGCTGCAACTGGAGGGCGCTTG
TGGCTCGTGTCCGTCCAGTACCATGACCATGAAGATGGGGCTTGAGCGTC
GTTTGCGCGAGAAGATTCCTGAGATTGAACAGGTCATTCAGGCAGAGCCG
GAAGGGCCACCGCTCAACGAAGAGGCCATTGAGAAGACGCTTGACGAAGT
CAGACCGTTTCTCAACGTTGCTGGCGGTACCATTGAATTGCTTTCTCTGC
ACGCCGACTCTGCCGTACCCACAGCAACACTCAAGATGACGGGTTCAGGC
GCAGCTATCAATTCGGTCAAGGTTGAGATCACGCATCGTCTAAAACGCAA
TTATGTCAAGCTAGCAAATGTAGTGTTCCAATAA
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Coding sequence (CDS) from alignment at tig00000075_pilon:564769..565302+

>Ggra9242.t1 ID=Ggra9242.t1|Name=Ggra9242.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=534bp|location=Sequence derived from alignment at tig00000075_pilon:564769..565302+ (Gracilaria gracilis GNS1m male)
ATGGTGGACACGGAGCCGAAGATCTCGCCTGTGCCGACTGAGTCCACGCC
GGCAGACTCGGCTGACGTGCTGGAGCTCTCGTGGGAGAACGTCGACAGGG
TGCTGGATGAGATGCGCCCGTACCTCATGTCGGACGGAGGCAACGTGTCC
ATTGCCGATATCGATGGCGCCACCGTCAAGCTGCAACTGGAGGGCGCTTG
TGGCTCGTGTCCGTCCAGTACCATGACCATGAAGATGGGGCTTGAGCGTC
GTTTGCGCGAGAAGATTCCTGAGATTGAACAGGTCATTCAGGCAGAGCCG
GAAGGGCCACCGCTCAACGAAGAGGCCATTGAGAAGACGCTTGACGAAGT
CAGACCGTTTCTCAACGTTGCTGGCGGTACCATTGAATTGCTTTCTCTGC
ACGCCGACTCTGCCGTACCCACAGCAACACTCAAGATGACGGGTTCAGGC
GCAGCTATCAATTCGGTCAAGGTTGAGATCACGCATCGTCTAAAACGCAA
TTATGTCAAGCTAGCAAATGTAGTGTTCCAATAA
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