Ggra7896.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7896.t1
Unique Name	Ggra7896.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	581

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000073_pilon	contig	tig00000073_pilon:273095..274837 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	44689.DDB0233661
Max annot lvl	554915\|Amoebozoa
Evalue	2.72e-14
EggNOG OGs	COG5347@1\|root,KOG0702@2759\|Eukaryota,3XDTT@554915\|Amoebozoa
Description	GTPase activator activity
COG category	U

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7896	Ggra7896	Gracilaria gracilis GNS1m male	gene	tig00000073_pilon 273095..274837 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7896.t1.start1	Ggra7896.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000073_pilon 273095..273097 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7896.t1.CDS1	Ggra7896.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000073_pilon 273095..274837 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7896.t1.exon1	Ggra7896.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000073_pilon 273095..274837 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7896.t1.stop1	Ggra7896.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000073_pilon 274835..274837 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7896.t1	Ggra7896.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000073_pilon 273095..274837 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000073_pilon:273095..274837+
coding sequence from alignment at tig00000073_pilon:273095..274837+

mRNA sequence

>Ggra7896.t1 ID=Ggra7896.t1|Name=Ggra7896.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=581bp
MSSRYVSRAAQDAEHALRDVQGRLEGNQFCADCGVPQPDFINLTIGTFIC
EVCADFHRTSSNRKLKDVFGGDLTLEDVRRMDSVGNDVANRKFLAVWDSR
EFPEPDRRDRDALREFLWLKYEGIFKKTQASNPPPQPEPPRYYENKGYEA
PPERSRRERPMRREHELFRDGPAPPGRAKGYWSSRFGDQRPPPPPPQHMA
MPPSEQLRRPREDYYGRPMSAPPYPDRYRTNAPQDRFQPPQPTPVVPYGF
PRSSRARYREEAYEDYASNASSRDRERRHSERSSTKPSSQDSYSDLEEER
GSRKKKSTKERSKGRRKKSELVDSDEYENDEYEEDDREERYSKKGSKKSK
KKSSKDGRSKRKEEEYEENGAYDDEDFSSDEEERGRKSKKKTSKRESDLA
KGGKGGPAETSEFDLMSEWMGDGKKEENPRPANPAAAGANAVQNIPQAMQ
QAYQTAQIPMMPPMSMYGSVMPMPGGGFMPMMPPPGMMPPPMGMPGMPPM
APMPPGMMGGMPPMQNAPGIPQGGGVSGVPGLINGMHNLNMNSRPQPMGP
SSVQPPPPPPPLGMPAGPPPGPPPDPPAMS*

spliced messenger RNA

>Ggra7896.t1 ID=Ggra7896.t1|Name=Ggra7896.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1743bp|location=Sequence derived from alignment at tig00000073_pilon:273095..274837+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCGCGCTATGTCTCGCGTGCTGCACAGGACGCCGAGCATGCGCT
CAGGGATGTGCAAGGCAGGTTAGAGGGGAATCAATTCTGCGCCGACTGTG
GTGTGCCCCAACCTGATTTTATCAATCTAACCATTGGCACTTTCATCTGT
GAAGTCTGCGCTGATTTTCATCGTACTTCTTCCAACAGAAAGTTGAAAGA
TGTTTTCGGCGGTGACCTCACCCTTGAGGATGTCCGTCGCATGGACTCAG
TCGGTAACGACGTGGCCAACCGAAAGTTCTTGGCAGTGTGGGACAGTCGA
GAGTTCCCAGAGCCGGACAGAAGAGACCGAGACGCTCTACGAGAGTTTCT
ATGGCTAAAGTACGAGGGTATTTTTAAGAAGACTCAAGCTTCGAATCCCC
CACCTCAACCAGAACCACCACGCTATTATGAGAACAAAGGCTACGAAGCG
CCACCTGAACGTTCTAGGAGAGAGCGACCGATGCGCCGAGAACACGAACT
TTTCCGCGACGGTCCAGCGCCTCCAGGTCGAGCGAAAGGGTACTGGTCTT
CTCGATTTGGCGATCAGAGACCTCCCCCACCACCACCGCAGCATATGGCG
ATGCCTCCCTCAGAGCAACTACGGCGACCTAGAGAAGATTACTACGGAAG
ACCAATGAGTGCTCCCCCGTACCCGGATCGATATCGCACAAATGCACCAC
AAGATCGTTTTCAACCACCTCAACCAACCCCTGTCGTCCCTTATGGATTT
CCGCGAAGTTCGCGTGCAAGGTATCGTGAGGAAGCATATGAAGATTACGC
TAGTAATGCAAGTAGTCGTGATCGCGAACGTCGTCATTCCGAAAGAAGCT
CAACAAAGCCAAGCTCTCAGGATTCGTACAGCGACTTAGAAGAGGAACGT
GGAAGTAGAAAGAAGAAATCTACAAAGGAACGCTCAAAAGGAAGGAGAAA
GAAGAGTGAGTTGGTGGACAGCGATGAATATGAAAATGATGAGTACGAGG
AAGACGACCGGGAAGAAAGATATAGTAAGAAAGGGTCAAAGAAATCAAAG
AAGAAGTCTTCAAAGGATGGACGGAGTAAGCGAAAGGAAGAAGAATACGA
GGAGAACGGTGCCTACGATGATGAAGACTTTTCCTCAGATGAGGAGGAGC
GTGGTCGAAAGTCTAAGAAGAAAACGTCAAAACGCGAATCGGATTTAGCT
AAAGGTGGTAAGGGAGGACCTGCTGAAACTTCAGAGTTTGATCTTATGTC
AGAATGGATGGGAGACGGCAAGAAGGAAGAGAACCCACGACCAGCGAACC
CTGCGGCAGCCGGAGCGAATGCAGTGCAGAACATTCCACAAGCCATGCAA
CAAGCGTATCAAACTGCTCAAATACCAATGATGCCGCCAATGTCTATGTA
TGGCAGTGTTATGCCAATGCCAGGAGGTGGCTTTATGCCAATGATGCCCC
CACCTGGCATGATGCCGCCACCGATGGGAATGCCGGGTATGCCGCCAATG
GCTCCGATGCCTCCCGGCATGATGGGAGGCATGCCTCCCATGCAAAACGC
ACCGGGCATCCCGCAAGGTGGCGGCGTATCAGGTGTCCCTGGTTTGATTA
ATGGAATGCACAACTTGAACATGAATTCGAGACCGCAGCCTATGGGACCG
TCATCGGTTCAACCTCCTCCGCCCCCGCCTCCGTTGGGCATGCCGGCAGG
CCCGCCACCTGGTCCTCCTCCAGATCCCCCGGCGATGTCTTAG

protein sequence of Ggra7896.t1

>Ggra7896.t1 ID=Ggra7896.t1|Name=Ggra7896.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=581bp
MSSRYVSRAAQDAEHALRDVQGRLEGNQFCADCGVPQPDFINLTIGTFIC
EVCADFHRTSSNRKLKDVFGGDLTLEDVRRMDSVGNDVANRKFLAVWDSR
EFPEPDRRDRDALREFLWLKYEGIFKKTQASNPPPQPEPPRYYENKGYEA
PPERSRRERPMRREHELFRDGPAPPGRAKGYWSSRFGDQRPPPPPPQHMA
MPPSEQLRRPREDYYGRPMSAPPYPDRYRTNAPQDRFQPPQPTPVVPYGF
PRSSRARYREEAYEDYASNASSRDRERRHSERSSTKPSSQDSYSDLEEER
GSRKKKSTKERSKGRRKKSELVDSDEYENDEYEEDDREERYSKKGSKKSK
KKSSKDGRSKRKEEEYEENGAYDDEDFSSDEEERGRKSKKKTSKRESDLA
KGGKGGPAETSEFDLMSEWMGDGKKEENPRPANPAAAGANAVQNIPQAMQ
QAYQTAQIPMMPPMSMYGSVMPMPGGGFMPMMPPPGMMPPPMGMPGMPPM
APMPPGMMGGMPPMQNAPGIPQGGGVSGVPGLINGMHNLNMNSRPQPMGP
SSVQPPPPPPPLGMPAGPPPGPPPDPPAMS*

mRNA from alignment at tig00000073_pilon:273095..274837+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7896.t1 ID=Ggra7896.t1|Name=Ggra7896.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1743bp|location=Sequence derived from alignment at tig00000073_pilon:273095..274837+ (Gracilaria gracilis GNS1m male)
ATGTCATCGCGCTATGTCTCGCGTGCTGCACAGGACGCCGAGCATGCGCT
CAGGGATGTGCAAGGCAGGTTAGAGGGGAATCAATTCTGCGCCGACTGTG
GTGTGCCCCAACCTGATTTTATCAATCTAACCATTGGCACTTTCATCTGT
GAAGTCTGCGCTGATTTTCATCGTACTTCTTCCAACAGAAAGTTGAAAGA
TGTTTTCGGCGGTGACCTCACCCTTGAGGATGTCCGTCGCATGGACTCAG
TCGGTAACGACGTGGCCAACCGAAAGTTCTTGGCAGTGTGGGACAGTCGA
GAGTTCCCAGAGCCGGACAGAAGAGACCGAGACGCTCTACGAGAGTTTCT
ATGGCTAAAGTACGAGGGTATTTTTAAGAAGACTCAAGCTTCGAATCCCC
CACCTCAACCAGAACCACCACGCTATTATGAGAACAAAGGCTACGAAGCG
CCACCTGAACGTTCTAGGAGAGAGCGACCGATGCGCCGAGAACACGAACT
TTTCCGCGACGGTCCAGCGCCTCCAGGTCGAGCGAAAGGGTACTGGTCTT
CTCGATTTGGCGATCAGAGACCTCCCCCACCACCACCGCAGCATATGGCG
ATGCCTCCCTCAGAGCAACTACGGCGACCTAGAGAAGATTACTACGGAAG
ACCAATGAGTGCTCCCCCGTACCCGGATCGATATCGCACAAATGCACCAC
AAGATCGTTTTCAACCACCTCAACCAACCCCTGTCGTCCCTTATGGATTT
CCGCGAAGTTCGCGTGCAAGGTATCGTGAGGAAGCATATGAAGATTACGC
TAGTAATGCAAGTAGTCGTGATCGCGAACGTCGTCATTCCGAAAGAAGCT
CAACAAAGCCAAGCTCTCAGGATTCGTACAGCGACTTAGAAGAGGAACGT
GGAAGTAGAAAGAAGAAATCTACAAAGGAACGCTCAAAAGGAAGGAGAAA
GAAGAGTGAGTTGGTGGACAGCGATGAATATGAAAATGATGAGTACGAGG
AAGACGACCGGGAAGAAAGATATAGTAAGAAAGGGTCAAAGAAATCAAAG
AAGAAGTCTTCAAAGGATGGACGGAGTAAGCGAAAGGAAGAAGAATACGA
GGAGAACGGTGCCTACGATGATGAAGACTTTTCCTCAGATGAGGAGGAGC
GTGGTCGAAAGTCTAAGAAGAAAACGTCAAAACGCGAATCGGATTTAGCT
AAAGGTGGTAAGGGAGGACCTGCTGAAACTTCAGAGTTTGATCTTATGTC
AGAATGGATGGGAGACGGCAAGAAGGAAGAGAACCCACGACCAGCGAACC
CTGCGGCAGCCGGAGCGAATGCAGTGCAGAACATTCCACAAGCCATGCAA
CAAGCGTATCAAACTGCTCAAATACCAATGATGCCGCCAATGTCTATGTA
TGGCAGTGTTATGCCAATGCCAGGAGGTGGCTTTATGCCAATGATGCCCC
CACCTGGCATGATGCCGCCACCGATGGGAATGCCGGGTATGCCGCCAATG
GCTCCGATGCCTCCCGGCATGATGGGAGGCATGCCTCCCATGCAAAACGC
ACCGGGCATCCCGCAAGGTGGCGGCGTATCAGGTGTCCCTGGTTTGATTA
ATGGAATGCACAACTTGAACATGAATTCGAGACCGCAGCCTATGGGACCG
TCATCGGTTCAACCTCCTCCGCCCCCGCCTCCGTTGGGCATGCCGGCAGG
CCCGCCACCTGGTCCTCCTCCAGATCCCCCGGCGATGTCTTAG

Coding sequence (CDS) from alignment at tig00000073_pilon:273095..274837+

>Ggra7896.t1 ID=Ggra7896.t1|Name=Ggra7896.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1743bp|location=Sequence derived from alignment at tig00000073_pilon:273095..274837+ (Gracilaria gracilis GNS1m male)
ATGTCATCGCGCTATGTCTCGCGTGCTGCACAGGACGCCGAGCATGCGCT
CAGGGATGTGCAAGGCAGGTTAGAGGGGAATCAATTCTGCGCCGACTGTG
GTGTGCCCCAACCTGATTTTATCAATCTAACCATTGGCACTTTCATCTGT
GAAGTCTGCGCTGATTTTCATCGTACTTCTTCCAACAGAAAGTTGAAAGA
TGTTTTCGGCGGTGACCTCACCCTTGAGGATGTCCGTCGCATGGACTCAG
TCGGTAACGACGTGGCCAACCGAAAGTTCTTGGCAGTGTGGGACAGTCGA
GAGTTCCCAGAGCCGGACAGAAGAGACCGAGACGCTCTACGAGAGTTTCT
ATGGCTAAAGTACGAGGGTATTTTTAAGAAGACTCAAGCTTCGAATCCCC
CACCTCAACCAGAACCACCACGCTATTATGAGAACAAAGGCTACGAAGCG
CCACCTGAACGTTCTAGGAGAGAGCGACCGATGCGCCGAGAACACGAACT
TTTCCGCGACGGTCCAGCGCCTCCAGGTCGAGCGAAAGGGTACTGGTCTT
CTCGATTTGGCGATCAGAGACCTCCCCCACCACCACCGCAGCATATGGCG
ATGCCTCCCTCAGAGCAACTACGGCGACCTAGAGAAGATTACTACGGAAG
ACCAATGAGTGCTCCCCCGTACCCGGATCGATATCGCACAAATGCACCAC
AAGATCGTTTTCAACCACCTCAACCAACCCCTGTCGTCCCTTATGGATTT
CCGCGAAGTTCGCGTGCAAGGTATCGTGAGGAAGCATATGAAGATTACGC
TAGTAATGCAAGTAGTCGTGATCGCGAACGTCGTCATTCCGAAAGAAGCT
CAACAAAGCCAAGCTCTCAGGATTCGTACAGCGACTTAGAAGAGGAACGT
GGAAGTAGAAAGAAGAAATCTACAAAGGAACGCTCAAAAGGAAGGAGAAA
GAAGAGTGAGTTGGTGGACAGCGATGAATATGAAAATGATGAGTACGAGG
AAGACGACCGGGAAGAAAGATATAGTAAGAAAGGGTCAAAGAAATCAAAG
AAGAAGTCTTCAAAGGATGGACGGAGTAAGCGAAAGGAAGAAGAATACGA
GGAGAACGGTGCCTACGATGATGAAGACTTTTCCTCAGATGAGGAGGAGC
GTGGTCGAAAGTCTAAGAAGAAAACGTCAAAACGCGAATCGGATTTAGCT
AAAGGTGGTAAGGGAGGACCTGCTGAAACTTCAGAGTTTGATCTTATGTC
AGAATGGATGGGAGACGGCAAGAAGGAAGAGAACCCACGACCAGCGAACC
CTGCGGCAGCCGGAGCGAATGCAGTGCAGAACATTCCACAAGCCATGCAA
CAAGCGTATCAAACTGCTCAAATACCAATGATGCCGCCAATGTCTATGTA
TGGCAGTGTTATGCCAATGCCAGGAGGTGGCTTTATGCCAATGATGCCCC
CACCTGGCATGATGCCGCCACCGATGGGAATGCCGGGTATGCCGCCAATG
GCTCCGATGCCTCCCGGCATGATGGGAGGCATGCCTCCCATGCAAAACGC
ACCGGGCATCCCGCAAGGTGGCGGCGTATCAGGTGTCCCTGGTTTGATTA
ATGGAATGCACAACTTGAACATGAATTCGAGACCGCAGCCTATGGGACCG
TCATCGGTTCAACCTCCTCCGCCCCCGCCTCCGTTGGGCATGCCGGCAGG
CCCGCCACCTGGTCCTCCTCCAGATCCCCCGGCGATGTCTTAG