Ggra7906.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra7906.t1
Unique Name	Ggra7906.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	638

Homology

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BLAST of Ggra7906.t1 vs. uniprot
Match: A0A2V3J504 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J504_9FLOR)

HSP 1 Score: 497 bits (1279), Expect = 2.490e-165
Identity = 320/527 (60.72%), Postives = 359/527 (68.12%), Query Frame = 0

Query:  153 QRRPKQRRYRASPAQLTHLLAKFEHNPSPSSAELQQLSAAIDMPFQSAVLWFKNRRARVPHKKAEKAXXXXXXXXXXXXXXXXXXXXXXATCMAEL----------------------------------AFRCASSQLAPSHS------LSVPPCVATAR--AVRVADARAPPVALAERELRDGANANNALLRSPPPSGAAGGEEPCTPVTQRRPRARFVPPTPRLFSQREYAVGDGVEVMESDKGICRSWYSAVVLCRAPAHISLGASAGGGGAXASGAHGAGRMVVHHSGEKSDAEGCDNEKDDGDESPRTVRSPVASPTPAVARIWYVVRYEHR-VDEHGNKLQEEVLAKRIRPKAPELDTWRPDIGDAIEVLKDGGWFIGVIQTLVIRKGYLVSFENGQVEWTRRHLLRPYQIWRGGDNWVVKKKAPLMVVRKSVGLSVTHPVCGKRKATGSGGGSGETKGRKRAKSTTDAVVEGSGPDGLPEGWRVGCMTGANGAT--VYVAPDGQRLRSLKEAQRYVKLM 634
            QRRPKQRRYRASPAQLTHLLAKF+ NPSPSSAELQQL++AIDMPFQSAVLWFKNRRARVPHKKAEKAXXXXXXXXXXXXXXXXXXXXXX                                         A R  +  L   H+      LS   C A  R  AV   DAR+      +  L  G + +   +R+        G EP TP+T RRPRARFVPPTPR+FSQREYA GD +EVM++ KGICRSWYSAVV+ RAP  ISLG +A                VV    ++ +    D ++ DGDESPRTVRSPVASPTPA ARI YVV+YE+  + ++G  +QEEVLAKRIRP APE + WRPDIGDA+EVL++GGWF+GVIQTLVIRKGY VSFENG VEW RRHLLRPYQIWRGG++WVVKKK PL VVRKSVGLSVTHPVCGK++  G G G         AKS    VV+GSGPDGLPEGWRVG MT   G    VYVAPDG RLRSLKEAQRYVKLM
Sbjct:  169 QRRPKQRRYRASPAQLTHLLAKFDTNPSPSSAELQQLASAIDMPFQSAVLWFKNRRARVPHKKAEKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAVSSIPDNTVPGAGRVVNKPLPQGHAGVTARELSPRRCAALGRSGAVGATDARS------KLTLTGGYSQS---VRN-----VGQGNEPSTPLTPRRPRARFVPPTPRVFSQREYANGDRIEVMDTSKGICRSWYSAVVISRAPGEISLGDAA----------------VVSVCVDEEE----DKQEADGDESPRTVRSPVASPTPAAARICYVVQYEYGGMGKNGEGIQEEVLAKRIRPAAPEQEDWRPDIGDAVEVLREGGWFVGVIQTLVIRKGYQVSFENGDVEWVRRHLLRPYQIWRGGEHWVVKKKPPLAVVRKSVGLSVTHPVCGKKRRAG-GEGXXXXXXXXXAKSV---VVDGSGPDGLPEGWRVGSMTSGGGGAQMVYVAPDGNRLRSLKEAQRYVKLM 657

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BLAST of Ggra7906.t1 vs. uniprot
Match: R7QBN4 (MBD domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBN4_CHOCR)

HSP 1 Score: 317 bits (813), Expect = 1.670e-99
Identity = 187/340 (55.00%), Postives = 221/340 (65.00%), Query Frame = 0

Query:  314 GEEPCTPVTQRRPRARFVPPTPRLFSQREYAVGDGVEVMESDKGICRSWYSAVVLCRA-PAHISLGASAGGGGAXASGAHGAGRMVVHHSGEKSDAEGCDNEKDDGD--ESPRTVRSPVASPTPAVARIWYVVRYEHRVDEHGNK-LQEEVLAKRIRPKAPELDT-----WRPDIGDAIEVLKDGGWFIGVIQTLVIRKGYLVSFENGQVEWTRRHLLRPYQIWRGGDNWVVKKKAPLMVVRKSVGLSVTHPVCGKRKAT----GSGGGSGETKGRKRAKSTTDAVVE-GSGPDGLPEGWRVGCMTGANGATV-----YVAPDGQRLRSLKEAQRYVKLM 634
            G E     T RRPR   +PPTPR+FSQ EY  GD VEV+E +KGICR+WYSA ++ R  P  +SLGASA    A A G    G        +K D     NE D+GD  +SPRTVRSP ASPTP +A++ Y VR+EHR +E G K L+ EVLA +IRP AP +       WRP +G+A+EVLKDG WF+ V Q  V+RKGY+VSFE+G VEW RR  LRPYQIWRGG  WV K KAPL V RK VGLSVTHP  GKRK +    GS  G    + R R+K +  A VE GSGPDGLPEGWRV  +       V     Y+APDG RLRSLKEAQRYV++M
Sbjct:   33 GAEFVQSTTLRRPRT--LPPTPRVFSQNEYRAGDKVEVLEMEKGICRAWYSATIVGRGGPKELSLGASA----AVACGFFSPGYGDKLEGSKKLDFTEDMNEDDNGDGGDSPRTVRSPAASPTPPIAKVLYRVRFEHRYEEQGGKPLETEVLASKIRPAAPFMTDEAPLDWRPVVGEAVEVLKDGTWFVAVTQNFVVRKGYMVSFESGDVEWVRRPRLRPYQIWRGGQRWVTKTKAPLAVSRKGVGLSVTHPPGGKRKRSDSDLGSNDGQDGRETRARSKRSRSADVETGSGPDGLPEGWRVDQIRCPETMEVKKKVYYMAPDGCRLRSLKEAQRYVRMM 366

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BLAST of Ggra7906.t1 vs. uniprot
Match: A0A1X6PEW2 (Homeobox domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PEW2_PORUM)

HSP 1 Score: 95.5 bits (236), Expect = 1.380e-16
Identity = 53/142 (37.32%), Postives = 70/142 (49.30%), Query Frame = 0

Query:  428 PVASPTPAVARIWYVVRYEHRVDE---HGNKLQ--EEVLAKRIRPKAPELDT-----WRPDIGDAIEVLKDGGWFIGVIQTLVIRKGYLVSFENGQVEWTRRHLLRPYQIWRGGDNWVVKKKAPLMVVRKSVGLSVTHPVCG 559
            P AS TP  ARI Y V     V +    G      E V A R+RP  P         W P+IG A+E      W +GV++    RKG+LVS +  +  W  R  LRP+ IWRGGD WV+K K P+ + R++   +    V G
Sbjct: 1011 PTASSTPQAARISYRVXXTVAVGDGVTDGTNADGGEIVPASRLRPAPPAAAAHLGRRWAPEIGHAVEARTGASWLVGVVRGAAPRKGFLVSTDGREAGWVSRVALRPFLIWRGGDEWVLKTKPPMALARRAAAAAPVPDVAG 1152

The following BLAST results are available for this feature:

BLAST of Ggra7906.t1 vs. uniprot

BLAST of Ggra7906.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A2V3J504	2.490e-165	60.72	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
R7QBN4	1.670e-99	55.00	MBD domain-containing protein n=1 Tax=Chondrus cri...	[more]
A0A1X6PEW2	1.380e-16	37.32	Homeobox domain-containing protein n=1 Tax=Porphyr...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 213..233
None	No IPR available	GENE3D	1.10.10.60		coord: 150..218 e-value: 2.7E-12 score: 48.2
None	No IPR available	GENE3D	3.30.890.10		coord: 566..635 e-value: 6.3E-6 score: 28.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 398..423
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 560..591
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 398..429
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 297..328
None	No IPR available	PANTHER	PTHR31917	AGENET DOMAIN-CONTAINING PROTEIN-RELATED	coord: 345..575
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 156..218 e-value: 1.1E-8 score: 44.9
IPR001356	Homeobox domain	PFAM	PF00046	Homeodomain	coord: 157..210 e-value: 1.4E-9 score: 37.6
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 154..214 score: 13.134811
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 157..210 e-value: 2.12424E-10 score: 54.5569
IPR001739	Methyl-CpG DNA binding	PROSITE	PS50982	MBD	coord: 585..637 score: 10.700129
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 592..632
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 149..211

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000073_pilon	contig	tig00000073_pilon:407255..409168 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7906.t1	Ggra7906.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000073_pilon 407255..409168 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra7906.t1 ID=Ggra7906.t1|Name=Ggra7906.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=638bp
MLGSPHKPFVANNSLLPPPARHPTMSSPPRPHPPVSPTFNPPVLPPLPSL
HLAQPPPRPTPTPPSPSTTAAALSLGALATAASLATASPIRPTPPAMQQL
STPAPTATATATTSSAASSATPTASAAATAAAAAAAAASAAAAAAAATAA
AAQRRPKQRRYRASPAQLTHLLAKFEHNPSPSSAELQQLSAAIDMPFQSA
VLWFKNRRARVPHKKAEKAAAAARRRAAAAAAKQKQEEVAAATCMAELAF
RCASSQLAPSHSLSVPPCVATARAVRVADARAPPVALAERELRDGANANN
ALLRSPPPSGAAGGEEPCTPVTQRRPRARFVPPTPRLFSQREYAVGDGVE
VMESDKGICRSWYSAVVLCRAPAHISLGASAGGGGAAASGAHGAGRMVVH
HSGEKSDAEGCDNEKDDGDESPRTVRSPVASPTPAVARIWYVVRYEHRVD
EHGNKLQEEVLAKRIRPKAPELDTWRPDIGDAIEVLKDGGWFIGVIQTLV
IRKGYLVSFENGQVEWTRRHLLRPYQIWRGGDNWVVKKKAPLMVVRKSVG
LSVTHPVCGKRKATGSGGGSGETKGRKRAKSTTDAVVEGSGPDGLPEGWR
VGCMTGANGATVYVAPDGQRLRSLKEAQRYVKLMRAV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001356	Homeobox_dom
IPR001739	Methyl_CpG_DNA-bd
IPR016177	DNA-bd_dom_sf
IPR009057	Homeobox-like_sf