Ggra7906.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7906.t1
Unique Name	Ggra7906.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	638

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000073_pilon	contig	tig00000073_pilon:407255..409168 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	161934.XP_010671797.1
PFAMs	Agenet
Max annot lvl	35493\|Streptophyta
Evalue	0.000109
EggNOG OGs	28N0V@1\|root,2QUJR@2759\|Eukaryota,37REJ@33090\|Viridiplantae,3GDFW@35493\|Streptophyta
Description	agenet domain-containing protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7906	Ggra7906	Gracilaria gracilis GNS1m male	gene	tig00000073_pilon 407255..409168 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7906.t1.stop1	Ggra7906.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000073_pilon 407255..407257 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7906.t1.CDS1	Ggra7906.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000073_pilon 407255..409168 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7906.t1.exon1	Ggra7906.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000073_pilon 407255..409168 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7906.t1.start1	Ggra7906.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000073_pilon 409166..409168 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7906.t1	Ggra7906.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000073_pilon 407255..409168 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000073_pilon:407255..409168-
coding sequence from alignment at tig00000073_pilon:407255..409168-

mRNA sequence

>Ggra7906.t1 ID=Ggra7906.t1|Name=Ggra7906.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=638bp
MLGSPHKPFVANNSLLPPPARHPTMSSPPRPHPPVSPTFNPPVLPPLPSL
HLAQPPPRPTPTPPSPSTTAAALSLGALATAASLATASPIRPTPPAMQQL
STPAPTATATATTSSAASSATPTASAAATAAAAAAAAASAAAAAAAATAA
AAQRRPKQRRYRASPAQLTHLLAKFEHNPSPSSAELQQLSAAIDMPFQSA
VLWFKNRRARVPHKKAEKAAAAARRRAAAAAAKQKQEEVAAATCMAELAF
RCASSQLAPSHSLSVPPCVATARAVRVADARAPPVALAERELRDGANANN
ALLRSPPPSGAAGGEEPCTPVTQRRPRARFVPPTPRLFSQREYAVGDGVE
VMESDKGICRSWYSAVVLCRAPAHISLGASAGGGGAAASGAHGAGRMVVH
HSGEKSDAEGCDNEKDDGDESPRTVRSPVASPTPAVARIWYVVRYEHRVD
EHGNKLQEEVLAKRIRPKAPELDTWRPDIGDAIEVLKDGGWFIGVIQTLV
IRKGYLVSFENGQVEWTRRHLLRPYQIWRGGDNWVVKKKAPLMVVRKSVG
LSVTHPVCGKRKATGSGGGSGETKGRKRAKSTTDAVVEGSGPDGLPEGWR
VGCMTGANGATVYVAPDGQRLRSLKEAQRYVKLMRAV*

spliced messenger RNA

>Ggra7906.t1 ID=Ggra7906.t1|Name=Ggra7906.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1914bp|location=Sequence derived from alignment at tig00000073_pilon:407255..409168- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGGATCACCTCACAAACCGTTTGTTGCCAACAACTCGCTTCTCCC
ACCCCCCGCCCGCCATCCCACCATGAGCTCTCCGCCGCGCCCTCATCCGC
CCGTATCGCCCACCTTCAACCCGCCCGTGTTGCCGCCGTTGCCGTCGCTG
CATCTTGCACAACCGCCGCCGCGCCCCACCCCTACCCCGCCATCGCCCTC
CACAACCGCCGCTGCGCTATCGCTTGGCGCGCTTGCCACCGCCGCTTCTC
TCGCCACTGCGTCGCCTATCAGGCCCACCCCTCCTGCCATGCAGCAGCTT
TCCACCCCCGCCCCCACCGCCACCGCAACCGCCACCACCTCCTCCGCCGC
CTCCTCCGCCACGCCCACCGCCTCCGCCGCCGCTACCGCTGCCGCTGCTG
CTGCTGCTGCTGCCTCCGCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCC
GCCGCGCAACGCCGCCCCAAGCAACGTCGCTACCGCGCGTCGCCCGCGCA
GCTCACACACCTGCTGGCCAAGTTTGAGCACAACCCGTCGCCGTCGTCCG
CCGAGCTGCAGCAACTGTCCGCCGCCATCGACATGCCCTTCCAGTCCGCC
GTGCTGTGGTTCAAGAACCGGCGCGCAAGAGTGCCGCACAAGAAGGCCGA
GAAGGCCGCCGCCGCCGCCAGACGCCGCGCCGCCGCCGCCGCCGCCAAGC
AGAAGCAAGAGGAAGTGGCCGCTGCTACCTGCATGGCCGAGCTCGCTTTC
AGGTGCGCCTCCTCGCAATTGGCGCCGTCGCACTCGTTGAGCGTGCCGCC
TTGCGTCGCCACCGCGCGCGCTGTGCGCGTGGCTGACGCGCGCGCGCCGC
CTGTCGCGCTGGCGGAGCGCGAGCTTCGCGACGGTGCCAACGCCAACAAC
GCGCTGTTGAGGTCGCCGCCTCCGAGTGGTGCGGCTGGCGGCGAGGAGCC
GTGCACGCCCGTGACGCAGCGACGGCCGCGCGCGCGCTTCGTGCCGCCCA
CGCCGAGACTGTTTTCGCAGAGAGAGTATGCTGTGGGCGATGGGGTGGAG
GTGATGGAGAGTGACAAGGGCATCTGTCGCTCGTGGTACTCGGCTGTGGT
ATTGTGTAGGGCGCCGGCGCACATTTCGCTGGGCGCCAGTGCGGGCGGTG
GCGGCGCGGCTGCCAGCGGTGCGCATGGCGCTGGTCGCATGGTGGTGCAT
CACAGTGGTGAGAAGAGTGACGCTGAAGGCTGTGACAATGAGAAGGATGA
TGGAGATGAGTCTCCGCGTACGGTACGATCGCCCGTTGCATCGCCCACAC
CGGCTGTGGCGCGTATTTGGTACGTGGTGAGGTATGAACATCGCGTGGAT
GAACATGGGAACAAGCTGCAGGAAGAGGTGCTCGCTAAGCGTATTCGACC
AAAGGCTCCTGAACTGGATACGTGGCGACCGGATATTGGGGACGCTATCG
AGGTGCTCAAGGACGGCGGGTGGTTTATTGGTGTGATTCAAACGCTGGTA
ATTCGAAAAGGGTATCTAGTGAGCTTCGAAAACGGACAGGTTGAATGGAC
GCGGCGCCACCTGCTGCGCCCGTACCAAATCTGGCGCGGCGGCGATAACT
GGGTGGTGAAGAAGAAGGCGCCGCTGATGGTGGTGCGCAAGAGCGTGGGA
CTGAGTGTGACGCACCCGGTGTGCGGCAAGAGGAAGGCGACAGGTAGTGG
CGGCGGTAGTGGGGAGACAAAGGGCAGGAAACGAGCGAAAAGCACAACGG
ACGCAGTGGTGGAAGGCTCGGGACCAGACGGGCTGCCGGAGGGATGGCGA
GTGGGCTGTATGACGGGAGCGAATGGGGCAACGGTGTACGTGGCGCCCGA
TGGGCAGCGACTAAGATCTCTCAAGGAGGCGCAGCGCTACGTGAAGCTGA
TGCGCGCAGTGTAA

protein sequence of Ggra7906.t1

>Ggra7906.t1 ID=Ggra7906.t1|Name=Ggra7906.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=638bp
MLGSPHKPFVANNSLLPPPARHPTMSSPPRPHPPVSPTFNPPVLPPLPSL
HLAQPPPRPTPTPPSPSTTAAALSLGALATAASLATASPIRPTPPAMQQL
STPAPTATATATTSSAASSATPTASAAATAAAAAAAAASAAAAAAAATAA
AAQRRPKQRRYRASPAQLTHLLAKFEHNPSPSSAELQQLSAAIDMPFQSA
VLWFKNRRARVPHKKAEKAAAAARRRAAAAAAKQKQEEVAAATCMAELAF
RCASSQLAPSHSLSVPPCVATARAVRVADARAPPVALAERELRDGANANN
ALLRSPPPSGAAGGEEPCTPVTQRRPRARFVPPTPRLFSQREYAVGDGVE
VMESDKGICRSWYSAVVLCRAPAHISLGASAGGGGAAASGAHGAGRMVVH
HSGEKSDAEGCDNEKDDGDESPRTVRSPVASPTPAVARIWYVVRYEHRVD
EHGNKLQEEVLAKRIRPKAPELDTWRPDIGDAIEVLKDGGWFIGVIQTLV
IRKGYLVSFENGQVEWTRRHLLRPYQIWRGGDNWVVKKKAPLMVVRKSVG
LSVTHPVCGKRKATGSGGGSGETKGRKRAKSTTDAVVEGSGPDGLPEGWR
VGCMTGANGATVYVAPDGQRLRSLKEAQRYVKLMRAV*

mRNA from alignment at tig00000073_pilon:407255..409168-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7906.t1 ID=Ggra7906.t1|Name=Ggra7906.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1914bp|location=Sequence derived from alignment at tig00000073_pilon:407255..409168- (Gracilaria gracilis GNS1m male)
ATGCTCGGATCACCTCACAAACCGTTTGTTGCCAACAACTCGCTTCTCCC
ACCCCCCGCCCGCCATCCCACCATGAGCTCTCCGCCGCGCCCTCATCCGC
CCGTATCGCCCACCTTCAACCCGCCCGTGTTGCCGCCGTTGCCGTCGCTG
CATCTTGCACAACCGCCGCCGCGCCCCACCCCTACCCCGCCATCGCCCTC
CACAACCGCCGCTGCGCTATCGCTTGGCGCGCTTGCCACCGCCGCTTCTC
TCGCCACTGCGTCGCCTATCAGGCCCACCCCTCCTGCCATGCAGCAGCTT
TCCACCCCCGCCCCCACCGCCACCGCAACCGCCACCACCTCCTCCGCCGC
CTCCTCCGCCACGCCCACCGCCTCCGCCGCCGCTACCGCTGCCGCTGCTG
CTGCTGCTGCTGCCTCCGCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCC
GCCGCGCAACGCCGCCCCAAGCAACGTCGCTACCGCGCGTCGCCCGCGCA
GCTCACACACCTGCTGGCCAAGTTTGAGCACAACCCGTCGCCGTCGTCCG
CCGAGCTGCAGCAACTGTCCGCCGCCATCGACATGCCCTTCCAGTCCGCC
GTGCTGTGGTTCAAGAACCGGCGCGCAAGAGTGCCGCACAAGAAGGCCGA
GAAGGCCGCCGCCGCCGCCAGACGCCGCGCCGCCGCCGCCGCCGCCAAGC
AGAAGCAAGAGGAAGTGGCCGCTGCTACCTGCATGGCCGAGCTCGCTTTC
AGGTGCGCCTCCTCGCAATTGGCGCCGTCGCACTCGTTGAGCGTGCCGCC
TTGCGTCGCCACCGCGCGCGCTGTGCGCGTGGCTGACGCGCGCGCGCCGC
CTGTCGCGCTGGCGGAGCGCGAGCTTCGCGACGGTGCCAACGCCAACAAC
GCGCTGTTGAGGTCGCCGCCTCCGAGTGGTGCGGCTGGCGGCGAGGAGCC
GTGCACGCCCGTGACGCAGCGACGGCCGCGCGCGCGCTTCGTGCCGCCCA
CGCCGAGACTGTTTTCGCAGAGAGAGTATGCTGTGGGCGATGGGGTGGAG
GTGATGGAGAGTGACAAGGGCATCTGTCGCTCGTGGTACTCGGCTGTGGT
ATTGTGTAGGGCGCCGGCGCACATTTCGCTGGGCGCCAGTGCGGGCGGTG
GCGGCGCGGCTGCCAGCGGTGCGCATGGCGCTGGTCGCATGGTGGTGCAT
CACAGTGGTGAGAAGAGTGACGCTGAAGGCTGTGACAATGAGAAGGATGA
TGGAGATGAGTCTCCGCGTACGGTACGATCGCCCGTTGCATCGCCCACAC
CGGCTGTGGCGCGTATTTGGTACGTGGTGAGGTATGAACATCGCGTGGAT
GAACATGGGAACAAGCTGCAGGAAGAGGTGCTCGCTAAGCGTATTCGACC
AAAGGCTCCTGAACTGGATACGTGGCGACCGGATATTGGGGACGCTATCG
AGGTGCTCAAGGACGGCGGGTGGTTTATTGGTGTGATTCAAACGCTGGTA
ATTCGAAAAGGGTATCTAGTGAGCTTCGAAAACGGACAGGTTGAATGGAC
GCGGCGCCACCTGCTGCGCCCGTACCAAATCTGGCGCGGCGGCGATAACT
GGGTGGTGAAGAAGAAGGCGCCGCTGATGGTGGTGCGCAAGAGCGTGGGA
CTGAGTGTGACGCACCCGGTGTGCGGCAAGAGGAAGGCGACAGGTAGTGG
CGGCGGTAGTGGGGAGACAAAGGGCAGGAAACGAGCGAAAAGCACAACGG
ACGCAGTGGTGGAAGGCTCGGGACCAGACGGGCTGCCGGAGGGATGGCGA
GTGGGCTGTATGACGGGAGCGAATGGGGCAACGGTGTACGTGGCGCCCGA
TGGGCAGCGACTAAGATCTCTCAAGGAGGCGCAGCGCTACGTGAAGCTGA
TGCGCGCAGTGTAA

Coding sequence (CDS) from alignment at tig00000073_pilon:407255..409168-

>Ggra7906.t1 ID=Ggra7906.t1|Name=Ggra7906.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1914bp|location=Sequence derived from alignment at tig00000073_pilon:407255..409168- (Gracilaria gracilis GNS1m male)
ATGCTCGGATCACCTCACAAACCGTTTGTTGCCAACAACTCGCTTCTCCC
ACCCCCCGCCCGCCATCCCACCATGAGCTCTCCGCCGCGCCCTCATCCGC
CCGTATCGCCCACCTTCAACCCGCCCGTGTTGCCGCCGTTGCCGTCGCTG
CATCTTGCACAACCGCCGCCGCGCCCCACCCCTACCCCGCCATCGCCCTC
CACAACCGCCGCTGCGCTATCGCTTGGCGCGCTTGCCACCGCCGCTTCTC
TCGCCACTGCGTCGCCTATCAGGCCCACCCCTCCTGCCATGCAGCAGCTT
TCCACCCCCGCCCCCACCGCCACCGCAACCGCCACCACCTCCTCCGCCGC
CTCCTCCGCCACGCCCACCGCCTCCGCCGCCGCTACCGCTGCCGCTGCTG
CTGCTGCTGCTGCCTCCGCCGCCGCCGCCGCCGCCGCCGCCACCGCCGCC
GCCGCGCAACGCCGCCCCAAGCAACGTCGCTACCGCGCGTCGCCCGCGCA
GCTCACACACCTGCTGGCCAAGTTTGAGCACAACCCGTCGCCGTCGTCCG
CCGAGCTGCAGCAACTGTCCGCCGCCATCGACATGCCCTTCCAGTCCGCC
GTGCTGTGGTTCAAGAACCGGCGCGCAAGAGTGCCGCACAAGAAGGCCGA
GAAGGCCGCCGCCGCCGCCAGACGCCGCGCCGCCGCCGCCGCCGCCAAGC
AGAAGCAAGAGGAAGTGGCCGCTGCTACCTGCATGGCCGAGCTCGCTTTC
AGGTGCGCCTCCTCGCAATTGGCGCCGTCGCACTCGTTGAGCGTGCCGCC
TTGCGTCGCCACCGCGCGCGCTGTGCGCGTGGCTGACGCGCGCGCGCCGC
CTGTCGCGCTGGCGGAGCGCGAGCTTCGCGACGGTGCCAACGCCAACAAC
GCGCTGTTGAGGTCGCCGCCTCCGAGTGGTGCGGCTGGCGGCGAGGAGCC
GTGCACGCCCGTGACGCAGCGACGGCCGCGCGCGCGCTTCGTGCCGCCCA
CGCCGAGACTGTTTTCGCAGAGAGAGTATGCTGTGGGCGATGGGGTGGAG
GTGATGGAGAGTGACAAGGGCATCTGTCGCTCGTGGTACTCGGCTGTGGT
ATTGTGTAGGGCGCCGGCGCACATTTCGCTGGGCGCCAGTGCGGGCGGTG
GCGGCGCGGCTGCCAGCGGTGCGCATGGCGCTGGTCGCATGGTGGTGCAT
CACAGTGGTGAGAAGAGTGACGCTGAAGGCTGTGACAATGAGAAGGATGA
TGGAGATGAGTCTCCGCGTACGGTACGATCGCCCGTTGCATCGCCCACAC
CGGCTGTGGCGCGTATTTGGTACGTGGTGAGGTATGAACATCGCGTGGAT
GAACATGGGAACAAGCTGCAGGAAGAGGTGCTCGCTAAGCGTATTCGACC
AAAGGCTCCTGAACTGGATACGTGGCGACCGGATATTGGGGACGCTATCG
AGGTGCTCAAGGACGGCGGGTGGTTTATTGGTGTGATTCAAACGCTGGTA
ATTCGAAAAGGGTATCTAGTGAGCTTCGAAAACGGACAGGTTGAATGGAC
GCGGCGCCACCTGCTGCGCCCGTACCAAATCTGGCGCGGCGGCGATAACT
GGGTGGTGAAGAAGAAGGCGCCGCTGATGGTGGTGCGCAAGAGCGTGGGA
CTGAGTGTGACGCACCCGGTGTGCGGCAAGAGGAAGGCGACAGGTAGTGG
CGGCGGTAGTGGGGAGACAAAGGGCAGGAAACGAGCGAAAAGCACAACGG
ACGCAGTGGTGGAAGGCTCGGGACCAGACGGGCTGCCGGAGGGATGGCGA
GTGGGCTGTATGACGGGAGCGAATGGGGCAACGGTGTACGTGGCGCCCGA
TGGGCAGCGACTAAGATCTCTCAAGGAGGCGCAGCGCTACGTGAAGCTGA
TGCGCGCAGTGTAA