Ggra5104.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5104.t1
Unique NameGgra5104.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length225
Homology
BLAST of Ggra5104.t1 vs. uniprot
Match: A0A2V3J6V5 (Transcription elongation factor TFIIS n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6V5_9FLOR)

HSP 1 Score: 331 bits (848), Expect = 7.900e-113
Identity = 171/228 (75.00%), Postives = 192/228 (84.21%), Query Frame = 0
Query:    1 MADIKKKLSATKTIDKKARTPTTPRTQIIAEDAEKPPSS-SPKSVGAT---ENSKEYDVKHPTGDKMRDKVRNLLAGALFKKDEHHVKSEDEANVIAYAIENAMFEKFEGSGQAYKQKYRSLSFNLKDPKNGKLRSAVLLRDILPSELIDMSSTDLANDDLRKRRAEVREKMTRDAMPYTQQEASTDRFKCGKCKERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 224
            MAD+KKKLSATKTIDKK R PTTP+    A      P   SP +V      ++  +YDVKHPTGDKMRDKVR+LLA ALFKKDE HV S+D+A ++A AIE+AMF KF+G+GQ+YKQKYRS+SFNLKDPKNGKLRS VL R I P EL+DMSST+LAND+LRKRRAEV+EKMTRDAMPYTQQ ASTDRFKCGKCK+RKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF
Sbjct:    1 MADVKKKLSATKTIDKKTRPPTTPKILSSAXXXXXXPLDVSPSTVSVPPPPDHDSQYDVKHPTGDKMRDKVRSLLADALFKKDEKHVSSKDDAQLVANAIEHAMFIKFDGNGQSYKQKYRSISFNLKDPKNGKLRSLVLTRQINPQELLDMSSTELANDELRKRRAEVQEKMTRDAMPYTQQAASTDRFKCGKCKQRKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 228          
BLAST of Ggra5104.t1 vs. uniprot
Match: R7QEZ4 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEZ4_CHOCR)

HSP 1 Score: 266 bits (681), Expect = 2.440e-87
Identity = 137/230 (59.57%), Postives = 176/230 (76.52%), Query Frame = 0
Query:    4 IKKKLSATKTIDKKART----PTTPRTQIIAEDA-----EKPPSSSPKSVGATENSKEYDVKHPTGDKMRDKVRNLLAGALFKKDEHHVKSEDEANVIAYAIENAMFEKFEGSGQAYKQKYRSLSFNLKDPKNGKLRSAVLLRDILPSELIDMSSTDLANDDLRKRRAEVREKMTRDAMPYTQQEASTDRFKCGKCKERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 224
            ++KKLSA+K I+KKAR+    P   R  + A+ A     E+   S+     ++E   EYDV HPT +K+RDK+R+LL  ALFKKDE  VK  ++A ++A AIE A+++K +G+G  YK KYR++SFN+KDPKN KLR A+L R + PSEL++MS+ DLAND+LRK R EVR KMTRDAMP+++QEASTD FKCGKCK+RKCTYYQMQTRSADEPLTTFV+CV+C NRWRF
Sbjct:    5 LEKKLSASKVINKKARSGDVSPHVSRDALKADAAAAATGERKDDSTQNETNSSEFDAEYDVPHPTNEKIRDKIRSLLTDALFKKDEDFVKDRNDAQIVANAIEAALYDKMDGNGAPYKNKYRNISFNIKDPKNAKLRMALLYRHLPPSELLNMSNHDLANDELRKNREEVRAKMTRDAMPFSKQEASTDMFKCGKCKQRKCTYYQMQTRSADEPLTTFVSCVHCGNRWRF 234          
BLAST of Ggra5104.t1 vs. uniprot
Match: A0A7S2ZFF0 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZFF0_9RHOD)

HSP 1 Score: 171 bits (433), Expect = 3.570e-50
Identity = 86/165 (52.12%), Postives = 119/165 (72.12%), Query Frame = 0
Query:   61 DKMRDKVRNLLAGALFKKDEHHVKSEDEANVIAYAIENAMFEKFEGSGQAYKQKYRSLSFNLKDPKNGKLRSAVLLRDILPSELIDMSSTDLANDDLRKRRAEVREKMTRDAMPY--TQQEASTDRFKCGKCKERKCTYYQMQTRSADEPLTTFVTCVNCNNRWR 223
            D +R +V+ +LA AL+K+ E HV+S ++A  IA  +E  M+  F G+ QAYK K+R+L+FNLKD KN +LRS V+   + P  LI MSS +LAN + R+   ++ +   R+A  Y  ++  A+TD FKCGKCK+RKCTYYQ+QTRSADEPLT+FVTC+ CNNRW+
Sbjct:   39 DPVRKRVKEMLANALYKESEGHVESLEKAMEIAVKLELEMYTVFHGTNQAYKDKFRTLNFNLKDEKNERLRSLVVSGAVGPERLITMSSQELANPERRESNTKIEKNNMREAQLYNPSKHAATTDLFKCGKCKQRKCTYYQLQTRSADEPLTSFVTCMVCNNRWK 203          
BLAST of Ggra5104.t1 vs. uniprot
Match: C1NA42 (Transcription elongation factor n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1NA42_MICPC)

HSP 1 Score: 172 bits (435), Expect = 5.450e-49
Identity = 90/168 (53.57%), Postives = 119/168 (70.83%), Query Frame = 0
Query:   60 GDKMRDKVRNLLAGALFKK---DEHHVKSEDEANVIAYAIENAMFEKFEGSGQAYKQKYRSLSFNLKDPKNGKLRSAVLLRDILPSELIDMSSTDLANDDLRKRRAEVREKMTRDAMPYTQQEASTDRFKCGKCKERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 224
            GD +RD+ R LLA A+ +     + +   ED A   A AIENAM  ++  +G+ YK K+R LSFNLKDPKN  LR +V    I P+ L+D+S  +L +D+ R   A++RE  T +A+   ++EASTD FKCGKCK+RKCTYYQ+QTRSADEP+TTFVTCVNC+NRW+F
Sbjct:  158 GDPLRDRTRELLAEAIAQAIGAPDVYASVEDVAQT-AIAIENAMHAQWSDTGKEYKAKFRQLSFNLKDPKNPDLRRSVADGLISPAVLLDLSPEELGSDERRNSNAKIREHATNEAVRGQKKEASTDAFKCGKCKQRKCTYYQLQTRSADEPMTTFVTCVNCDNRWKF 324          
BLAST of Ggra5104.t1 vs. uniprot
Match: A0A1X6P3X2 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P3X2_PORUM)

HSP 1 Score: 161 bits (408), Expect = 6.030e-47
Identity = 87/162 (53.70%), Postives = 109/162 (67.28%), Query Frame = 0
Query:   63 MRDKVRNLLAGALFKKDEHHVKSEDEANVIAYAIENAMFEKFEGS-GQAYKQKYRSLSFNLKDPKNGKLRSAVLLRDILPSELIDMSSTDLANDDLRKRRAEVREKMTRDAMPYTQQEASTDRFKCGKCKERKCTYYQMQTRSADEPLTTFVTCVNCNNRWR 223
            MRDKVR+L+A AL+K  +  V     A   A A+E AMF       G AYK KYR LSFNLKD KN  LRS VL  D+ P+ L+ MS+ +LAN++ +  R EV E M R+A P     A+TD F+CGKCK+R+ TY+QMQTRSADEP+TTFV C+ C NRW+
Sbjct:    1 MRDKVRSLIASALYKDTDGLVADLAGAEPAAAAVEAAMFTATGTDVGGAYKSKYRQLSFNLKDAKNVALRSRVLRGDLTPAVLVGMSNEELANEETKAYRKEVAETMLREAQPGGNARATTDMFRCGKCKQRRTTYHQMQTRSADEPMTTFVCCLECGNRWK 162          
BLAST of Ggra5104.t1 vs. uniprot
Match: transcription elongation factor TFIIS-like n=3 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CF9CAD6 (transcription elongation factor TFIIS-like n=3 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CF9CAD6)

HSP 1 Score: 162 bits (409), Expect = 8.550e-45
Identity = 82/170 (48.24%), Postives = 116/170 (68.24%), Query Frame = 0
Query:   61 DKMRDKVRNLLAGALFK------KDEHHVKSEDEANVIAYAIENAMFEKFEGSGQAYKQKYRSLSFNLKDPKNGKLRSAVLLRDILPSELIDMSSTDLANDDLRKRRAEVREKMTRDAMPYTQQEASTDRFKCGKCKERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 224
            D +RDK+R LL  AL K      +++ HV +  +   +A ++E+AMF+K   S  A K KYRS+ FN+KDPKN  LR  VLL +I P  L+ M+  ++A+D  ++   +++EK   D       +A+TD+FKCG+C++RKCTYYQMQTRSADEP+TT+VTCVNCNN W+F
Sbjct:  185 DSLRDKIRELLVEALSKVAGEVDEEDVHVVNACDPIRVAVSVESAMFDKLGRSNGAQKLKYRSIMFNIKDPKNPDLRRKVLLGEIKPERLVTMTPEEMASDARQQEINQIKEKALFDCERGGAPKATTDQFKCGRCRQRKCTYYQMQTRSADEPMTTYVTCVNCNNHWKF 354          
BLAST of Ggra5104.t1 vs. uniprot
Match: A0A834Z4H7 (Transcription elongation factor n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834Z4H7_9MAGN)

HSP 1 Score: 162 bits (410), Expect = 1.200e-44
Identity = 85/170 (50.00%), Postives = 112/170 (65.88%), Query Frame = 0
Query:   61 DKMRDKVRNLLAGALFK-KDEHHVKSEDEANV-----IAYAIENAMFEKFEGSGQAYKQKYRSLSFNLKDPKNGKLRSAVLLRDILPSELIDMSSTDLANDDLRKRRAEVREKMTRDAMPYTQQEASTDRFKCGKCKERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 224
            D MRDKVR LL+ A  K   E      DEAN      +A  +E+AMFEK+  S  A K KYRS+ FN+KDP N  LR  VLL  + P  L+ M+  ++A+D  ++   +++EK   D     Q +A+TD+F+CG+C +RKCTYYQMQTRSADEP+TT+VTCVNCNN W+F
Sbjct:  215 DAMRDKVRELLSEAFSKVSSEADEDIRDEANACDPIRVAVTVESAMFEKWGRSNGAQKFKYRSIMFNIKDPNNPDLRRKVLLGHVKPERLLSMTPDEMASDQRQRENNQIKEKALFDCERGGQAKATTDQFRCGRCGQRKCTYYQMQTRSADEPMTTYVTCVNCNNHWKF 384          
BLAST of Ggra5104.t1 vs. uniprot
Match: A0A7J7PD88 (Transcription elongation factor n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PD88_9CHLO)

HSP 1 Score: 158 bits (400), Expect = 1.390e-44
Identity = 85/184 (46.20%), Postives = 116/184 (63.04%), Query Frame = 0
Query:   42 KSVGATENSKEYDVKHPTGDKMRDKVRNLLAGALFKKDEHHVKSEDEANVIAYAIENAMFEKF-EGSGQAYKQKYRSLSFNLKDPKNGKLRSAVLLRDILPSELIDMSSTDLANDDLRKRRAEVREKMTRDAMPYTQQEASTDRFKCGKCKERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 224
            KS G+ + S        TGD  RD++R LL   L    +     +D   V A  +E A++ +F + +G  Y  K RSLSFNLKDP N  LR+ VL   + P EL+DM   +LA+D  R+   ++R++   +A+    Q+ASTD FKCG+CK++KCTYYQMQTRSADEP+TTFVTCVNC  +W+F
Sbjct:   70 KSSGSGKASGPLRPPPKTGDGKRDRIRQLLCDGLCLVPDDQRSGQDPGEVAA-EVEAAIYARFNQHTGPEYGAKVRSLSFNLKDPANPDLRARVLQGQVDPQELVDMPPEELASDSKRRENHKIRQEAAAEAVRGQTQQASTDMFKCGRCKQKKCTYYQMQTRSADEPMTTFVTCVNCGQKWKF 252          
BLAST of Ggra5104.t1 vs. uniprot
Match: A0A067JGE8 (Transcription elongation factor n=1 Tax=Jatropha curcas TaxID=180498 RepID=A0A067JGE8_JATCU)

HSP 1 Score: 161 bits (407), Expect = 1.440e-44
Identity = 83/170 (48.82%), Postives = 113/170 (66.47%), Query Frame = 0
Query:   61 DKMRDKVRNLLAGALFK-KDEHHVKSEDEANV-----IAYAIENAMFEKFEGSGQAYKQKYRSLSFNLKDPKNGKLRSAVLLRDILPSELIDMSSTDLANDDLRKRRAEVREKMTRDAMPYTQQEASTDRFKCGKCKERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 224
            D +RDK+R LL  AL K   E      DE N      +A ++E+AMFEK   S    K KYRS+ FN+KDPKN  LR  VLL ++ P +LI M+  ++A+   ++   E+++K    +      +A+TD+FKCG+C++RKCTYYQMQTRSADEP+TT+VTCVNCNNRW+F
Sbjct:  178 DALRDKIRELLVEALSKVATEADEDIRDEVNACDPVRVAVSVESAMFEKLGRSNGTQKLKYRSIMFNIKDPKNPDLRRKVLLGEVDPRKLISMTPEEMASQQRQRENEEIKKKALHHSQIGGPSQATTDQFKCGRCQQRKCTYYQMQTRSADEPMTTYVTCVNCNNRWKF 347          
BLAST of Ggra5104.t1 vs. uniprot
Match: A0A2P6TNC7 (Transcription elongation factor n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TNC7_CHLSO)

HSP 1 Score: 160 bits (405), Expect = 1.850e-44
Identity = 86/169 (50.89%), Postives = 110/169 (65.09%), Query Frame = 0
Query:   59 TGDKMRDKVRNLLAGALFKKDEHHVKSEDEAN---VIAYAIENAMFEKFEGSGQAYKQKYRSLSFNLKDPKNGKLRSAVLLRDILPSELIDMSSTDLANDDLRKRRAEVREKMTRDAMPYTQQEASTDRFKCGKCKERKCTYYQMQTRSADEPLTTFVTCVNCNNRWRF 224
            TGD +RDK R  LA A      H    E  A    V   A+EN ++ +  G  QAYK K+R L FNLKD  N  LR  VL  +I P  L ++   +LA+D  R+  A +REK   DA P + ++A+TD+F+CGKCK+RKCTYYQMQTRSADEP+TTFV+C+NCNNRW+F
Sbjct:  166 TGDSIRDKCRQNLAQAF-----HQAVLEGVAGDPLVCGVAVENEIYNQNGGVSQAYKAKFRQLHFNLKDAANPDLRRKVLSGEIAPDVLHNLPPEELASDAKREENARIREKKLFDAAPSSAKQATTDQFQCGKCKQRKCTYYQMQTRSADEPMTTFVSCMNCNNRWKF 329          
The following BLAST results are available for this feature:
BLAST of Ggra5104.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6V57.900e-11375.00Transcription elongation factor TFIIS n=1 Tax=Grac... [more]
R7QEZ42.440e-8759.57Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S2ZFF03.570e-5052.12Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
C1NA425.450e-4953.57Transcription elongation factor n=1 Tax=Micromonas... [more]
A0A1X6P3X26.030e-4753.70Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
transcription elongation factor TFIIS-like n=3 Tax=Anacardiaceae TaxID=4011 RepID=UPI001CF9CAD68.550e-4548.24transcription elongation factor TFIIS-like n=3 Tax... [more]
A0A834Z4H71.200e-4450.00Transcription elongation factor n=1 Tax=Tetracentr... [more]
A0A7J7PD881.390e-4446.20Transcription elongation factor n=1 Tax=Scenedesmu... [more]
A0A067JGE81.440e-4448.82Transcription elongation factor n=1 Tax=Jatropha c... [more]
A0A2P6TNC71.850e-4450.89Transcription elongation factor n=1 Tax=Chlorella ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003618Transcription elongation factor S-II, central domainSMARTSM00510mid_6coord: 61..163
e-value: 1.7E-25
score: 100.7
IPR003618Transcription elongation factor S-II, central domainPFAMPF07500TFIIS_Mcoord: 59..171
e-value: 3.9E-30
score: 104.6
IPR003618Transcription elongation factor S-II, central domainPROSITEPS51321TFIIS_CENTRALcoord: 63..180
score: 29.166544
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 185..224
e-value: 1.1E-20
score: 84.7
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 185..223
e-value: 1.0E-18
score: 66.9
IPR001222Zinc finger, TFIIS-typePROSITEPS00466ZF_TFIIS_1coord: 187..222
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 183..223
score: 14.243057
NoneNo IPR availableGENE3D2.20.25.10coord: 154..224
e-value: 1.1E-25
score: 91.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..62
NoneNo IPR availablePANTHERPTHR11477:SF36TRANSCRIPTION ELONGATION FACTOR TFIIScoord: 27..224
NoneNo IPR availablePANTHERPTHR11477TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEINcoord: 27..224
NoneNo IPR availableCDDcd13749Zn-ribbon_TFIIScoord: 178..224
e-value: 1.64281E-29
score: 102.299
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 164..223
IPR036575Transcription elongation factor S-II, central domain superfamilyGENE3D1.10.472.30coord: 43..153
e-value: 1.5E-28
score: 101.2
IPR036575Transcription elongation factor S-II, central domain superfamilySUPERFAMILY46942Elongation factor TFIIS domain 2coord: 47..156
IPR035100Transcription elongation factor, IIS-typePIRSFPIRSF006704TFIIScoord: 2..224
e-value: 9.8E-66
score: 219.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:476422..477096 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5104.t1Ggra5104.t1Gracilaria gracilis GNS1m malemRNAtig00000069_pilon 476422..477096 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5104.t1 ID=Ggra5104.t1|Name=Ggra5104.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=225bp
MADIKKKLSATKTIDKKARTPTTPRTQIIAEDAEKPPSSSPKSVGATENS
KEYDVKHPTGDKMRDKVRNLLAGALFKKDEHHVKSEDEANVIAYAIENAM
FEKFEGSGQAYKQKYRSLSFNLKDPKNGKLRSAVLLRDILPSELIDMSST
DLANDDLRKRRAEVREKMTRDAMPYTQQEASTDRFKCGKCKERKCTYYQM
QTRSADEPLTTFVTCVNCNNRWRF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003618TFIIS_cen_dom
IPR001222Znf_TFIIS
IPR036575TFIIS_cen_dom_sf
IPR035100TF_IIS-typ