Ggra2397.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2397.t1
Unique NameGgra2397.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length312
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:130034..130969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2397Ggra2397Gracilaria gracilis GNS1m malegenetig00000005_pilon 130034..130969 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2397.t1.start1Ggra2397.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 130034..130036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2397.t1.CDS1Ggra2397.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 130034..130969 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2397.t1.exon1Ggra2397.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 130034..130969 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2397.t1.stop1Ggra2397.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 130967..130969 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2397.t1Ggra2397.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 130034..130969 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2397.t1 ID=Ggra2397.t1|Name=Ggra2397.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=312bp
MPSKIRHSALVNALPIDYRHGKTFSLPSSSRATPDDWSSMAAYATGLIAG
RYSVATALGKSPEKDPASLSEAADRLLTSREASMFLAWKKDPKSALPSPD
WRRLRTSITGSPAARRRWEQFVPALQLLYGDRDVKLSAEHCKGWADKYVD
AMPLLVAARKMHRARFYARCVGSSASAKLDYLELLACRKLMSEIGAQRVK
TSSRMKQLNKYAADKEEELLRRISKLNITDAPSSRDSAMKTSEARDAAYS
KLTKTRTQRISDAAMVKKQNIELTSLETALRVRIQALEERLESSRRSAPS
SSGRTRSRSRR*
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spliced messenger RNA

>Ggra2397.t1 ID=Ggra2397.t1|Name=Ggra2397.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00000005_pilon:130034..130969+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCTCCAAAATCCGCCATAGCGCGTTGGTCAACGCGCTTCCCATCGA
CTACCGCCACGGTAAAACCTTCTCCTTACCTTCGTCGTCACGTGCCACCC
CGGATGATTGGTCCTCCATGGCCGCGTACGCCACCGGGCTTATAGCCGGT
CGCTACTCTGTGGCCACCGCCTTGGGAAAGTCGCCGGAGAAGGACCCGGC
CTCCTTGTCCGAGGCCGCCGACCGACTACTCACTTCCCGCGAGGCTTCCA
TGTTCCTCGCGTGGAAAAAAGACCCCAAGTCTGCGCTTCCGTCCCCCGAC
TGGCGTCGACTCAGGACCTCTATCACCGGCTCTCCGGCTGCCAGGCGCCG
TTGGGAGCAGTTTGTACCGGCCTTGCAGCTCTTGTATGGAGACCGTGACG
TCAAGCTGTCCGCAGAGCATTGCAAGGGATGGGCCGACAAGTACGTCGAT
GCTATGCCGTTGCTGGTGGCTGCCAGGAAGATGCATCGCGCCAGGTTCTA
CGCCCGCTGTGTAGGCTCGTCTGCGTCCGCAAAGCTGGATTATCTGGAAC
TGCTCGCATGCCGCAAGCTCATGAGTGAAATAGGCGCGCAGCGTGTCAAG
ACCAGCAGTCGTATGAAGCAGCTTAACAAGTACGCGGCTGACAAGGAAGA
GGAGTTGCTGCGTCGAATCTCAAAGCTCAACATAACTGACGCGCCTTCCA
GTCGAGATTCTGCTATGAAGACGTCAGAAGCAAGGGATGCTGCGTATTCC
AAGCTTACCAAGACTCGCACGCAGCGCATTAGTGACGCCGCTATGGTCAA
AAAGCAGAATATCGAGTTGACTTCGCTGGAAACCGCGCTTCGCGTTCGCA
TCCAAGCGTTGGAGGAGCGTTTGGAATCATCTCGTCGGTCTGCCCCGTCC
AGTTCGGGAAGGACTCGGTCTCGATCTCGTCGATGA
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protein sequence of Ggra2397.t1

>Ggra2397.t1 ID=Ggra2397.t1|Name=Ggra2397.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=312bp
MPSKIRHSALVNALPIDYRHGKTFSLPSSSRATPDDWSSMAAYATGLIAG
RYSVATALGKSPEKDPASLSEAADRLLTSREASMFLAWKKDPKSALPSPD
WRRLRTSITGSPAARRRWEQFVPALQLLYGDRDVKLSAEHCKGWADKYVD
AMPLLVAARKMHRARFYARCVGSSASAKLDYLELLACRKLMSEIGAQRVK
TSSRMKQLNKYAADKEEELLRRISKLNITDAPSSRDSAMKTSEARDAAYS
KLTKTRTQRISDAAMVKKQNIELTSLETALRVRIQALEERLESSRRSAPS
SSGRTRSRSRR*
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mRNA from alignment at tig00000005_pilon:130034..130969+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2397.t1 ID=Ggra2397.t1|Name=Ggra2397.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00000005_pilon:130034..130969+ (Gracilaria gracilis GNS1m male)
ATGCCCTCCAAAATCCGCCATAGCGCGTTGGTCAACGCGCTTCCCATCGA
CTACCGCCACGGTAAAACCTTCTCCTTACCTTCGTCGTCACGTGCCACCC
CGGATGATTGGTCCTCCATGGCCGCGTACGCCACCGGGCTTATAGCCGGT
CGCTACTCTGTGGCCACCGCCTTGGGAAAGTCGCCGGAGAAGGACCCGGC
CTCCTTGTCCGAGGCCGCCGACCGACTACTCACTTCCCGCGAGGCTTCCA
TGTTCCTCGCGTGGAAAAAAGACCCCAAGTCTGCGCTTCCGTCCCCCGAC
TGGCGTCGACTCAGGACCTCTATCACCGGCTCTCCGGCTGCCAGGCGCCG
TTGGGAGCAGTTTGTACCGGCCTTGCAGCTCTTGTATGGAGACCGTGACG
TCAAGCTGTCCGCAGAGCATTGCAAGGGATGGGCCGACAAGTACGTCGAT
GCTATGCCGTTGCTGGTGGCTGCCAGGAAGATGCATCGCGCCAGGTTCTA
CGCCCGCTGTGTAGGCTCGTCTGCGTCCGCAAAGCTGGATTATCTGGAAC
TGCTCGCATGCCGCAAGCTCATGAGTGAAATAGGCGCGCAGCGTGTCAAG
ACCAGCAGTCGTATGAAGCAGCTTAACAAGTACGCGGCTGACAAGGAAGA
GGAGTTGCTGCGTCGAATCTCAAAGCTCAACATAACTGACGCGCCTTCCA
GTCGAGATTCTGCTATGAAGACGTCAGAAGCAAGGGATGCTGCGTATTCC
AAGCTTACCAAGACTCGCACGCAGCGCATTAGTGACGCCGCTATGGTCAA
AAAGCAGAATATCGAGTTGACTTCGCTGGAAACCGCGCTTCGCGTTCGCA
TCCAAGCGTTGGAGGAGCGTTTGGAATCATCTCGTCGGTCTGCCCCGTCC
AGTTCGGGAAGGACTCGGTCTCGATCTCGTCGATGA
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Coding sequence (CDS) from alignment at tig00000005_pilon:130034..130969+

>Ggra2397.t1 ID=Ggra2397.t1|Name=Ggra2397.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=936bp|location=Sequence derived from alignment at tig00000005_pilon:130034..130969+ (Gracilaria gracilis GNS1m male)
ATGCCCTCCAAAATCCGCCATAGCGCGTTGGTCAACGCGCTTCCCATCGA
CTACCGCCACGGTAAAACCTTCTCCTTACCTTCGTCGTCACGTGCCACCC
CGGATGATTGGTCCTCCATGGCCGCGTACGCCACCGGGCTTATAGCCGGT
CGCTACTCTGTGGCCACCGCCTTGGGAAAGTCGCCGGAGAAGGACCCGGC
CTCCTTGTCCGAGGCCGCCGACCGACTACTCACTTCCCGCGAGGCTTCCA
TGTTCCTCGCGTGGAAAAAAGACCCCAAGTCTGCGCTTCCGTCCCCCGAC
TGGCGTCGACTCAGGACCTCTATCACCGGCTCTCCGGCTGCCAGGCGCCG
TTGGGAGCAGTTTGTACCGGCCTTGCAGCTCTTGTATGGAGACCGTGACG
TCAAGCTGTCCGCAGAGCATTGCAAGGGATGGGCCGACAAGTACGTCGAT
GCTATGCCGTTGCTGGTGGCTGCCAGGAAGATGCATCGCGCCAGGTTCTA
CGCCCGCTGTGTAGGCTCGTCTGCGTCCGCAAAGCTGGATTATCTGGAAC
TGCTCGCATGCCGCAAGCTCATGAGTGAAATAGGCGCGCAGCGTGTCAAG
ACCAGCAGTCGTATGAAGCAGCTTAACAAGTACGCGGCTGACAAGGAAGA
GGAGTTGCTGCGTCGAATCTCAAAGCTCAACATAACTGACGCGCCTTCCA
GTCGAGATTCTGCTATGAAGACGTCAGAAGCAAGGGATGCTGCGTATTCC
AAGCTTACCAAGACTCGCACGCAGCGCATTAGTGACGCCGCTATGGTCAA
AAAGCAGAATATCGAGTTGACTTCGCTGGAAACCGCGCTTCGCGTTCGCA
TCCAAGCGTTGGAGGAGCGTTTGGAATCATCTCGTCGGTCTGCCCCGTCC
AGTTCGGGAAGGACTCGGTCTCGATCTCGTCGATGA
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