Ggra5167.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5167.t1
Unique NameGgra5167.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length430
Homology
BLAST of Ggra5167.t1 vs. uniprot
Match: A0A2V3J6I4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6I4_9FLOR)

HSP 1 Score: 502 bits (1293), Expect = 8.050e-174
Identity = 249/424 (58.73%), Postives = 308/424 (72.64%), Query Frame = 0
Query:    4 IPGYRYDVRRNRYFKIQPGEREQSKDLGAQAPRPAKRRKGKSQLEPQRRSGLYNYLKDVETDAKQPSLPVANSLLLSGCKKTCFDDVDYQQPDMDVSFNQLRKLDRHYSQIARTDEGESLWDMDQVNTFFEVRKSANSVTIGTHLYPLGGSRCTIDSSEADTCVYEGSWLAHGADVGRFYQVCKYRILKIKPHEEQRLLLVLRRPFLGAMAISKTGIPALAVHKKVYVLDAEVEQRAARAPRHAFNVSAGGSSPIDNLKFFGPRIAGSLFNGWLFVYDAAFPTSSAWESRGDERVVDMHSCDDGKTLFVSSMLNRRTNLVCWDTRIPYAQTPPIRFEGHKNSHKHLRFHVDTNYACGLLAAGGDDGFVRLWDARKAGVPITAIDLKGELPEAVKLVGFRGGLLYNPSLWVQTDKSLYLYQRSQL 427
            IPGYRYD + NRYFK+QPG  ++S  L  +  +   +R+  SQ      + L+ Y+ +VE D   PS    N  LL+   +  FD++DY   D+D+S  Q +K+  HY  +A  D+ +SLWD+++VN+F EVR+ A S+ I  HLYP+GG+  T +  +A TCV  G+W+A G+D G FYQV K+RI +    EEQRLLL LRRPF G MAIS  G+PALAV+KKVY+LD E+ Q A RAPR  FNV   G S IDNLKFFG RIAGSL+NG LF+YD A P S  WESRG+ RV DM SCD GK L+ SSMLN   NL+CWDTR+ YA TP +RFEGH+NSHK LRFHVDTNYACG+LAAGGDDG VRLWDARKA +P+++IDLKGE+PEAVKLVGFR G +YNPSLWVQT KSLYLY++SQL
Sbjct:   18 IPGYRYDRKLNRYFKLQPGCTDKSPSLHDRPCKRTVKRRRLSQEPTGIGTSLHRYITNVEEDKTPPSRVGLNCRLLASSPRASFDEIDYDTNDLDISIEQRKKIYGHYQSLAERDKPKSLWDINEVNSFVEVREKATSLQINFHLYPIGGALATFEPCKAQTCVTHGAWIALGSDSGMFYQVSKFRITQCDLEEEQRLLLYLRRPFAGRMAISSDGLPALAVNKKVYILDTELGQLAPRAPRPVFNVV--GLSAIDNLKFFGTRIAGSLWNGKLFMYDIASPRSPIWESRGNTRVADMQSCDGGKILYTSSMLNYAQNLLCWDTRLSYALTPVLRFEGHRNSHKRLRFHVDTNYACGILAAGGDDGIVRLWDARKAELPLSSIDLKGEIPEAVKLVGFREGPVYNPSLWVQTHKSLYLYEKSQL 439          
BLAST of Ggra5167.t1 vs. uniprot
Match: R7QDC6 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDC6_CHOCR)

HSP 1 Score: 102 bits (253), Expect = 1.690e-20
Identity = 51/142 (35.92%), Postives = 72/142 (50.70%), Query Frame = 0
Query:  285 PTSSAWESRGDERVVDMHSCDDGKTLFVSSMLNRRTNLVCWDTRIPYAQTPPIRFEGHKNSHKHLRFHVDTNYACGLLAAGGDDGFVRLWDARKAGVPITAIDLKGELPEAVKLVGFRGGLLYNPSLWVQTDKSLYLYQRSQ 426
            P  S   S+    V D+    DG  L+VS M N+  NL  WD R  Y+  P + F GH+NSHK L+F ++     G+L AGGDD  VR W+   +G  +    L GE+P+ VK  G+       P  W+ ++   Y+ Q  Q
Sbjct:  191 PACSFRPSKKHSAVTDLKLSTDGNYLYVSCMRNKSNNLAKWDLR-KYSSEPAVVFNGHRNSHKSLKFDIEETTTGGILLAGGDDSVVRAWNTHTSGTGVECARLPGEIPKLVKFAGWGKESPAAPGAWIVSNVGKYVMQCGQ 331          
The following BLAST results are available for this feature:
BLAST of Ggra5167.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J6I48.050e-17458.73Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QDC61.690e-2035.92Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 214..395
e-value: 1.7E-10
score: 42.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..50
NoneNo IPR availablePANTHERPTHR44472DDB1- AND CUL4-ASSOCIATED FACTOR 4-RELATEDcoord: 2..43
coord: 274..422
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 339..384
score: 9.271977
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 247..423

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000069_piloncontigtig00000069_pilon:655731..657020 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5167.t1Ggra5167.t1Gracilaria gracilis GNS1m malemRNAtig00000069_pilon 655731..657020 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5167.t1 ID=Ggra5167.t1|Name=Ggra5167.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=430bp
MPVIPGYRYDVRRNRYFKIQPGEREQSKDLGAQAPRPAKRRKGKSQLEPQ
RRSGLYNYLKDVETDAKQPSLPVANSLLLSGCKKTCFDDVDYQQPDMDVS
FNQLRKLDRHYSQIARTDEGESLWDMDQVNTFFEVRKSANSVTIGTHLYP
LGGSRCTIDSSEADTCVYEGSWLAHGADVGRFYQVCKYRILKIKPHEEQR
LLLVLRRPFLGAMAISKTGIPALAVHKKVYVLDAEVEQRAARAPRHAFNV
SAGGSSPIDNLKFFGPRIAGSLFNGWLFVYDAAFPTSSAWESRGDERVVD
MHSCDDGKTLFVSSMLNRRTNLVCWDTRIPYAQTPPIRFEGHKNSHKHLR
FHVDTNYACGLLAAGGDDGFVRLWDARKAGVPITAIDLKGELPEAVKLVG
FRGGLLYNPSLWVQTDKSLYLYQRSQLML*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR001680WD40_repeat
IPR036322WD40_repeat_dom_sf