Ggra5167.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5167.t1
Unique Name	Ggra5167.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	430

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000069_pilon	contig	tig00000069_pilon:655731..657020 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5167	Ggra5167	Gracilaria gracilis GNS1m male	gene	tig00000069_pilon 655731..657020 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5167.t1.stop1	Ggra5167.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000069_pilon 655731..655733 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5167.t1.CDS1	Ggra5167.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000069_pilon 655731..657020 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5167.t1.exon1	Ggra5167.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000069_pilon 655731..657020 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5167.t1.start1	Ggra5167.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000069_pilon 657018..657020 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5167.t1	Ggra5167.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000069_pilon 655731..657020 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000069_pilon:655731..657020-
coding sequence from alignment at tig00000069_pilon:655731..657020-

mRNA sequence

>Ggra5167.t1 ID=Ggra5167.t1|Name=Ggra5167.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=430bp
MPVIPGYRYDVRRNRYFKIQPGEREQSKDLGAQAPRPAKRRKGKSQLEPQ
RRSGLYNYLKDVETDAKQPSLPVANSLLLSGCKKTCFDDVDYQQPDMDVS
FNQLRKLDRHYSQIARTDEGESLWDMDQVNTFFEVRKSANSVTIGTHLYP
LGGSRCTIDSSEADTCVYEGSWLAHGADVGRFYQVCKYRILKIKPHEEQR
LLLVLRRPFLGAMAISKTGIPALAVHKKVYVLDAEVEQRAARAPRHAFNV
SAGGSSPIDNLKFFGPRIAGSLFNGWLFVYDAAFPTSSAWESRGDERVVD
MHSCDDGKTLFVSSMLNRRTNLVCWDTRIPYAQTPPIRFEGHKNSHKHLR
FHVDTNYACGLLAAGGDDGFVRLWDARKAGVPITAIDLKGELPEAVKLVG
FRGGLLYNPSLWVQTDKSLYLYQRSQLML*

spliced messenger RNA

>Ggra5167.t1 ID=Ggra5167.t1|Name=Ggra5167.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00000069_pilon:655731..657020- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGTAATACCCGGATATCGTTACGACGTCCGTCGGAACCGCTACTT
CAAGATCCAGCCCGGAGAGCGTGAACAATCGAAAGATCTCGGTGCGCAGG
CTCCTCGACCTGCGAAACGTAGGAAGGGCAAAAGCCAACTCGAACCGCAA
CGCCGATCTGGCTTGTATAACTATCTCAAAGATGTTGAAACCGATGCAAA
GCAGCCTTCTCTTCCAGTGGCAAACTCGTTGCTTCTATCTGGATGTAAGA
AGACTTGCTTCGATGACGTTGACTACCAACAGCCAGACATGGATGTCAGT
TTCAATCAGCTTAGAAAACTCGATCGTCACTACAGTCAGATTGCACGTAC
AGATGAAGGGGAGTCCTTATGGGACATGGATCAAGTGAACACTTTTTTCG
AGGTGAGAAAGAGCGCAAATTCGGTTACTATTGGCACCCATCTATACCCT
CTTGGCGGCTCGCGTTGCACGATTGACTCCTCCGAGGCGGATACTTGTGT
ATATGAGGGCTCTTGGTTGGCACACGGAGCTGATGTAGGTCGCTTTTATC
AAGTTTGCAAGTATCGAATATTGAAAATCAAACCCCACGAAGAGCAACGG
CTTCTCCTCGTTCTACGAAGACCTTTTTTGGGAGCTATGGCGATTAGTAA
GACGGGAATTCCTGCTTTAGCAGTTCATAAGAAAGTTTATGTATTAGATG
CTGAAGTTGAACAACGCGCTGCCCGTGCACCTCGTCATGCATTTAACGTA
TCCGCCGGAGGCTCATCACCGATCGATAACTTGAAATTCTTTGGACCGAG
GATTGCGGGGTCATTGTTTAACGGTTGGCTCTTTGTTTATGATGCCGCAT
TCCCAACCTCCTCTGCATGGGAGTCTAGAGGTGACGAACGGGTTGTTGAC
ATGCACTCGTGTGATGATGGAAAAACGCTTTTCGTGTCTTCAATGCTTAA
CCGAAGAACGAATTTGGTTTGTTGGGATACACGAATCCCGTACGCCCAGA
CCCCACCCATACGATTCGAAGGACACAAGAATTCCCACAAGCATTTACGT
TTTCATGTTGACACCAACTATGCATGTGGCCTTCTTGCAGCTGGAGGAGA
TGATGGATTCGTCAGATTGTGGGACGCCAGAAAGGCGGGAGTTCCAATAA
CGGCCATCGACCTTAAGGGAGAACTCCCAGAAGCTGTTAAGCTGGTCGGA
TTTCGAGGCGGTTTGTTGTACAACCCGAGTCTATGGGTTCAGACTGATAA
ATCACTTTACTTGTATCAAAGGTCTCAACTAATGCTTTGA

protein sequence of Ggra5167.t1

>Ggra5167.t1 ID=Ggra5167.t1|Name=Ggra5167.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=430bp
MPVIPGYRYDVRRNRYFKIQPGEREQSKDLGAQAPRPAKRRKGKSQLEPQ
RRSGLYNYLKDVETDAKQPSLPVANSLLLSGCKKTCFDDVDYQQPDMDVS
FNQLRKLDRHYSQIARTDEGESLWDMDQVNTFFEVRKSANSVTIGTHLYP
LGGSRCTIDSSEADTCVYEGSWLAHGADVGRFYQVCKYRILKIKPHEEQR
LLLVLRRPFLGAMAISKTGIPALAVHKKVYVLDAEVEQRAARAPRHAFNV
SAGGSSPIDNLKFFGPRIAGSLFNGWLFVYDAAFPTSSAWESRGDERVVD
MHSCDDGKTLFVSSMLNRRTNLVCWDTRIPYAQTPPIRFEGHKNSHKHLR
FHVDTNYACGLLAAGGDDGFVRLWDARKAGVPITAIDLKGELPEAVKLVG
FRGGLLYNPSLWVQTDKSLYLYQRSQLML*

mRNA from alignment at tig00000069_pilon:655731..657020-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5167.t1 ID=Ggra5167.t1|Name=Ggra5167.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1290bp|location=Sequence derived from alignment at tig00000069_pilon:655731..657020- (Gracilaria gracilis GNS1m male)
ATGCCTGTAATACCCGGATATCGTTACGACGTCCGTCGGAACCGCTACTT
CAAGATCCAGCCCGGAGAGCGTGAACAATCGAAAGATCTCGGTGCGCAGG
CTCCTCGACCTGCGAAACGTAGGAAGGGCAAAAGCCAACTCGAACCGCAA
CGCCGATCTGGCTTGTATAACTATCTCAAAGATGTTGAAACCGATGCAAA
GCAGCCTTCTCTTCCAGTGGCAAACTCGTTGCTTCTATCTGGATGTAAGA
AGACTTGCTTCGATGACGTTGACTACCAACAGCCAGACATGGATGTCAGT
TTCAATCAGCTTAGAAAACTCGATCGTCACTACAGTCAGATTGCACGTAC
AGATGAAGGGGAGTCCTTATGGGACATGGATCAAGTGAACACTTTTTTCG
AGGTGAGAAAGAGCGCAAATTCGGTTACTATTGGCACCCATCTATACCCT
CTTGGCGGCTCGCGTTGCACGATTGACTCCTCCGAGGCGGATACTTGTGT
ATATGAGGGCTCTTGGTTGGCACACGGAGCTGATGTAGGTCGCTTTTATC
AAGTTTGCAAGTATCGAATATTGAAAATCAAACCCCACGAAGAGCAACGG
CTTCTCCTCGTTCTACGAAGACCTTTTTTGGGAGCTATGGCGATTAGTAA
GACGGGAATTCCTGCTTTAGCAGTTCATAAGAAAGTTTATGTATTAGATG
CTGAAGTTGAACAACGCGCTGCCCGTGCACCTCGTCATGCATTTAACGTA
TCCGCCGGAGGCTCATCACCGATCGATAACTTGAAATTCTTTGGACCGAG
GATTGCGGGGTCATTGTTTAACGGTTGGCTCTTTGTTTATGATGCCGCAT
TCCCAACCTCCTCTGCATGGGAGTCTAGAGGTGACGAACGGGTTGTTGAC
ATGCACTCGTGTGATGATGGAAAAACGCTTTTCGTGTCTTCAATGCTTAA
CCGAAGAACGAATTTGGTTTGTTGGGATACACGAATCCCGTACGCCCAGA
CCCCACCCATACGATTCGAAGGACACAAGAATTCCCACAAGCATTTACGT
TTTCATGTTGACACCAACTATGCATGTGGCCTTCTTGCAGCTGGAGGAGA
TGATGGATTCGTCAGATTGTGGGACGCCAGAAAGGCGGGAGTTCCAATAA
CGGCCATCGACCTTAAGGGAGAACTCCCAGAAGCTGTTAAGCTGGTCGGA
TTTCGAGGCGGTTTGTTGTACAACCCGAGTCTATGGGTTCAGACTGATAA
ATCACTTTACTTGTATCAAAGGTCTCAACTAATGCTTTGA

Coding sequence (CDS) from alignment at tig00000069_pilon:655731..657020-

>Ggra5167.t1 ID=Ggra5167.t1|Name=Ggra5167.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1290bp|location=Sequence derived from alignment at tig00000069_pilon:655731..657020- (Gracilaria gracilis GNS1m male)
ATGCCTGTAATACCCGGATATCGTTACGACGTCCGTCGGAACCGCTACTT
CAAGATCCAGCCCGGAGAGCGTGAACAATCGAAAGATCTCGGTGCGCAGG
CTCCTCGACCTGCGAAACGTAGGAAGGGCAAAAGCCAACTCGAACCGCAA
CGCCGATCTGGCTTGTATAACTATCTCAAAGATGTTGAAACCGATGCAAA
GCAGCCTTCTCTTCCAGTGGCAAACTCGTTGCTTCTATCTGGATGTAAGA
AGACTTGCTTCGATGACGTTGACTACCAACAGCCAGACATGGATGTCAGT
TTCAATCAGCTTAGAAAACTCGATCGTCACTACAGTCAGATTGCACGTAC
AGATGAAGGGGAGTCCTTATGGGACATGGATCAAGTGAACACTTTTTTCG
AGGTGAGAAAGAGCGCAAATTCGGTTACTATTGGCACCCATCTATACCCT
CTTGGCGGCTCGCGTTGCACGATTGACTCCTCCGAGGCGGATACTTGTGT
ATATGAGGGCTCTTGGTTGGCACACGGAGCTGATGTAGGTCGCTTTTATC
AAGTTTGCAAGTATCGAATATTGAAAATCAAACCCCACGAAGAGCAACGG
CTTCTCCTCGTTCTACGAAGACCTTTTTTGGGAGCTATGGCGATTAGTAA
GACGGGAATTCCTGCTTTAGCAGTTCATAAGAAAGTTTATGTATTAGATG
CTGAAGTTGAACAACGCGCTGCCCGTGCACCTCGTCATGCATTTAACGTA
TCCGCCGGAGGCTCATCACCGATCGATAACTTGAAATTCTTTGGACCGAG
GATTGCGGGGTCATTGTTTAACGGTTGGCTCTTTGTTTATGATGCCGCAT
TCCCAACCTCCTCTGCATGGGAGTCTAGAGGTGACGAACGGGTTGTTGAC
ATGCACTCGTGTGATGATGGAAAAACGCTTTTCGTGTCTTCAATGCTTAA
CCGAAGAACGAATTTGGTTTGTTGGGATACACGAATCCCGTACGCCCAGA
CCCCACCCATACGATTCGAAGGACACAAGAATTCCCACAAGCATTTACGT
TTTCATGTTGACACCAACTATGCATGTGGCCTTCTTGCAGCTGGAGGAGA
TGATGGATTCGTCAGATTGTGGGACGCCAGAAAGGCGGGAGTTCCAATAA
CGGCCATCGACCTTAAGGGAGAACTCCCAGAAGCTGTTAAGCTGGTCGGA
TTTCGAGGCGGTTTGTTGTACAACCCGAGTCTATGGGTTCAGACTGATAA
ATCACTTTACTTGTATCAAAGGTCTCAACTAATGCTTTGA